CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 93

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF893P93SnonsynCctTct36362363420.9994528170-28172
ORF893P93SnonsynCcTTcA36362140.00038501728170-28172
ORF893P93SnonsynCCtAGt3636250.00013750628170-28172
ORF893P93SnonsynCcTTcC3636210.000027501228170-28172
ORF893P93LnonsyncCtcTt159615090.94548928170-28172
ORF893P93LnonsynCCTTTA1596640.040100328170-28172
ORF893P93LnonsyncCTcTA1596160.010025128170-28172
ORF893P93LnonsynCCTTTG159650.0031328328170-28172
ORF893P93LnonsyncCTcTC159610.00062656628170-28172
ORF893P93LnonsyncCTcTG159610.00062656628170-28172
ORF893P93deldelCCT---558558128170-28172
ORF893P93HnonsyncCtcAt4423190.72171928170-28172
ORF893P93HnonsyncCTcAC4421230.27828128170-28172
ORF893P93TnonsynCctAct3002830.94333328170-28172
ORF893P93TnonsynCcTAcA300170.056666728170-28172
ORF893P93InonsynCCtATt121590.48760328170-28172
ORF893P93InonsynCCTATA121580.47933928170-28172
ORF893P93InonsynCCTATC12140.033057828170-28172
ORF893P93XnonsynCCTTAA80740.92528170-28172
ORF893P93XnonsynCCTTAG8050.062528170-28172
ORF893P93XnonsynCCTTGA8010.012528170-28172
ORF893P93KnonsynCCTAAA78730.93589728170-28172
ORF893P93KnonsynCCTAAG7850.064102628170-28172
ORF893P93YnonsynCCtTAt75710.94666728170-28172
ORF893P93NnonsynCCtAAt75710.94666728170-28172
ORF893P93YnonsynCCTTAC7540.053333328170-28172
ORF893P93NnonsynCCTAAC7540.053333328170-28172
ORF893P93FnonsynCCtTTt71680.95774728170-28172
ORF893P93FnonsynCCTTTC7130.042253528170-28172
ORF893P93PsynccTccA69330.47826128170-28172
ORF893P93PsynccTccC69290.4202928170-28172
ORF893P93PsynccTccG6970.10144928170-28172
ORF893P93QnonsyncCTcAA25240.9628170-28172
ORF893P93QnonsyncCTcAG2510.0428170-28172
ORF893P93del2delCCt--t21180.85714328170-28172
ORF893P93del2delcCTc--2130.14285728170-28172
ORF893P93RnonsyncCtcGt840.528170-28172
ORF893P93RnonsynCCTAGA820.2528170-28172
ORF893P93RnonsyncCTcGC810.12528170-28172
ORF893P93RnonsyncCTcGA810.12528170-28172
ORF893P93VnonsynCCTGTA630.528170-28172
ORF893P93VnonsynCCtGTt620.33333328170-28172
ORF893P93VnonsynCCTGTG610.16666728170-28172
ORF893P93MnonsynCCTATG55128170-28172
ORF893P93EnonsynCCTGAA540.828170-28172
ORF893P93del1delccTcc-530.628170-28172
ORF893P93del1delCct-ct520.428170-28172
ORF893P93EnonsynCCTGAG510.228170-28172
ORF893P93CnonsynCCtTGt44128170-28172
ORF893P93DnonsynCCtGAt22128170-28172
ORF893P93AnonsynCctGct11128170-28172

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF893P93SCctTct3634236362All0.006951
ORF893P93SCcTTcA1436362All0.000003
ORF893P93SCCtAGt536362All0.000001
ORF893P93SCcTTcC136362All0
ORF893P93SCctTct3479534795AY.290.548843
ORF893P93LcCtcTt15091596All0.000289
ORF893P93LCCTTTA641596All0.000012
ORF893P93LcCTcTA161596All0.000003
ORF893P93LCCTTTG51596All0.000001
ORF893P93LcCTcTG11596All0
ORF893P93LcCTcTC11596All0
ORF893P93LcCtcTt502581B.1.1.70.000449
ORF893P93LCCTTTA59581B.1.1.70.000053
ORF893P93LcCTcTA13581B.1.1.70.000012
ORF893P93LCCTTTG5581B.1.1.70.000004
ORF893P93LcCTcTC1581B.1.1.70.000001
ORF893P93LcCTcTG1581B.1.1.70.000001
ORF893P93delCCT---558558All0.000107
ORF893P93SCctTct553553AY.29.10.12194
ORF893P93HcCtcAt319442All0.000061
ORF893P93HcCTcAC123442All0.000024
ORF893P93TCctAct283300All0.000054
ORF893P93TCcTAcA17300All0.000003
ORF893P93LcCtcTt207207B.1.20.001823
ORF893P93SCctTct146146B.1.617.20.00055
ORF893P93SCctTct128128AY.40.000199
ORF893P93SCctTct127127AY.740.014687
ORF893P93ICCtATt59121All0.000011
ORF893P93ICCTATA58121All0.000011
ORF893P93ICCTATC4121All0.000001
ORF893P93HcCTcAC118120AY.340.011442
ORF893P93HcCtcAt2120AY.340.000194
ORF893P93LcCtcTt110110AY.1030.000683
ORF893P93ICCtATt54110B.1.1.70.000048
ORF893P93ICCTATA53110B.1.1.70.000047
ORF893P93ICCTATC3110B.1.1.70.000003
ORF893P93HcCtcAt107107B.1.3510.003181
ORF893P93TCctAct86103B.1.1.70.000077
ORF893P93TCcTAcA17103B.1.1.70.000015
ORF893P93TCctAct101101B.1.2210.007174
ORF893P93delCCT---8787B.1.1.70.000078
ORF893P93LcCtcTt8384B.1.617.20.000313
ORF893P93LcCTcTA184B.1.617.20.000004
ORF893P93XCCTTAA7480All0.000014
ORF893P93XCCTTAG580All0.000001
ORF893P93XCCTTGA180All0
ORF893P93SCctTct5979B.1.1.70.000053
ORF893P93SCcTTcA1479B.1.1.70.000013
ORF893P93SCCtAGt579B.1.1.70.000004
ORF893P93SCcTTcC179B.1.1.70.000001
ORF893P93KCCTAAA7378All0.000014
ORF893P93KCCTAAG578All0.000001
ORF893P93XCCTTAA7076B.1.1.70.000063
ORF893P93XCCTTAG576B.1.1.70.000004
ORF893P93XCCTTGA176B.1.1.70.000001
ORF893P93YCCtTAt7175All0.000014
ORF893P93NCCtAAt7175All0.000014
ORF893P93YCCTTAC475All0.000001
ORF893P93NCCTAAC475All0.000001
ORF893P93SCctTct7373AY.930.019934
ORF893P93KCCTAAA6873B.1.1.70.000061
ORF893P93KCCTAAG573B.1.1.70.000004
ORF893P93FCCtTTt6871All0.000013
ORF893P93FCCTTTC371All0.000001
ORF893P93YCCtTAt6771B.1.1.70.00006
ORF893P93YCCTTAC471B.1.1.70.000004
ORF893P93PccTccA3369All0.000006
ORF893P93PccTccC2969All0.000006
ORF893P93PccTccG769All0.000001
ORF893P93NCCtAAt6669B.1.1.70.000059
ORF893P93NCCTAAC369B.1.1.70.000003
ORF893P93FCCtTTt6164B.1.1.70.000055
ORF893P93FCCTTTC364B.1.1.70.000003
ORF893P93LcCtcTt5757AY.40.000089
ORF893P93delCCT---5757B.1.1.2940.072152
ORF893P93delCCT---5656AY.40.000087
ORF893P93HcCtcAt5353B.1.20.000467
ORF893P93LcCtcTt4950B.1.10.000889
ORF893P93LCCTTTA150B.1.10.000018
ORF893P93HcCtcAt4949B.1.2210.003481
ORF893P93LcCtcTt4747AY.440.000286
ORF893P93LcCtcTt4747B.1.1.3370.169065
ORF893P93LcCtcTt4343B.1.220.056653
ORF893P93delCCT---3737AY.290.000584
ORF893P93SCctTct3535B.1.1.3060.015344
ORF893P93delCCT---3333B.1.1.2220.006732
ORF893P93LcCtcTt3333B.1.177.430.048744
ORF893P93delCCT---3333B.1.2430.002296
ORF893P93delCCT---3232B.1.1600.000998
ORF893P93LcCtcTt2931B.10.000266
ORF893P93LCCTTTA231B.10.000018
ORF893P93SCctTct2929AY.1000.001334
ORF893P93HcCtcAt2729B.1.1.70.000024
ORF893P93HcCTcAC229B.1.1.70.000002
ORF893P93SCctTct2828AY.1020.000742
ORF893P93LcCtcTt2626P.10.00041
ORF893P93QcCTcAA2425All0.000005
ORF893P93QcCTcAG125All0
ORF893P93delCCT---2525AY.1030.000155
ORF893P93delCCT---2424B.1.10.000435
ORF893P93QcCTcAA2324B.1.1.70.000021
ORF893P93QcCTcAG124B.1.1.70.000001
ORF893P93LcCtcTt2323AY.390.000568
ORF893P93LcCtcTt2323AY.430.000102
ORF893P93SCctTct2222AY.1170.001859
ORF893P93HcCtcAt2222AY.40.000034
ORF893P93PccTccA1822B.1.1.70.000016
ORF893P93PccTccC422B.1.1.70.000004
ORF893P93del2CCt--t1821All0.000003
ORF893P93del2cCTc--321All0.000001
ORF893P93SCctTct2020AY.1030.000124
ORF893P93SCctTct1919B.1.1.2940.024051
ORF893P93LcCtcTt1818AY.30.000179
ORF893P93delCCT---1818B0.002301
ORF893P93SCctTct1717AY.430.000075
ORF893P93LcCtcTt1717AY.98.10.000823
ORF893P93LcCtcTt1616B.1.1600.000499
ORF893P93delCCT---1515AY.250.00009
ORF893P93LcCtcTt1414AY.420.000563
ORF893P93SCctTct1414B.10.000128
ORF893P93SCctTct1313AY.1100.001465
ORF893P93SCctTct1313AY.420.000523
ORF893P93SCctTct1212AY.360.001779
ORF893P93SCctTct1212AY.440.000073
ORF893P93SCctTct1111AY.790.013317
ORF893P93HcCtcAt1111C.370.001277
ORF893P93SCctTct1010AY.390.000247
ORF893P93LcCtcTt79AY.250.000042
ORF893P93LCCTTTA19AY.250.000006
ORF893P93LcCTcTA19AY.250.000006
ORF893P93delCCT---99AY.430.00004
ORF893P93SCctTct99B.1.1.5190.000357
ORF893P93delCCT---99B.1.617.20.000034
ORF893P93SCctTct99P.10.000142
ORF893P93RcCtcGt48All0.000001
ORF893P93RCCTAGA28All0
ORF893P93RcCTcGA18All0
ORF893P93RcCTcGC18All0
ORF893P93SCctTct88AY.340.000776
ORF893P93SCctTct88AY.610.000838
ORF893P93del2CCt--t88B.1.1600.00025
ORF893P93TCctAct88B.1.1600.00025
ORF893P93TCctAct88B.1.20.00007
ORF893P93delCCT---88P.10.000126
ORF893P93SCctTct77AY.250.000042
ORF893P93HcCtcAt77AY.30.00007
ORF893P93SCctTct77AY.410.002058
ORF893P93HcCtcAt77AY.46.60.000505
ORF893P93TCctAct77B.10.000064
ORF893P93delCCT---77B.1.1.2650.022082
ORF893P93delCCT---77B.1.1.2840.000752
ORF893P93delCCT---77B.1.36.160.009972
ORF893P93TCctAct77B.1.617.20.000026
ORF893P93LcCtcTt77C.1.10.538462
ORF893P93SCctTct77C.370.000812
ORF893P93LcCtcTt77P.1.140.000335
ORF893P93VCCTGTA36All0.000001
ORF893P93VCCtGTt26All0
ORF893P93VCCTGTG16All0
ORF893P93LcCtcTt66AY.1020.000159
ORF893P93SCctTct66AY.1110.001099
ORF893P93PccTccG66AY.4.20.00013
ORF893P93HcCtcAt46AY.420.000161
ORF893P93HcCTcAC26AY.420.00008
ORF893P93TCctAct66AY.530.001725
ORF893P93SCctTct66AY.880.005305
ORF893P93HcCtcAt66B.10.000055
ORF893P93SCctTct66B.1.10.000109
ORF893P93del2CCt--t66B.1.1.70.000005
ORF893P93TCctAct66B.1.1770.000079
ORF893P93SCctTct66B.1.3510.000178
ORF893P93PccTccC66B.1.617.20.000023
ORF893P93delCCT---66P.1.140.000287
ORF893P93SCctTct55A.2.50.002495
ORF893P93MCCTATG55All0.000001
ORF893P93ECCTGAA45All0.000001
ORF893P93del1ccTcc-35All0.000001
ORF893P93del1Cct-ct25All0
ORF893P93ECCTGAG15All0
ORF893P93TCctAct55AY.1030.000031
ORF893P93SCctTct55AY.1210.000677
ORF893P93LcCtcTt55AY.260.000142
ORF893P93delCCT---55AY.29.10.001103
ORF893P93LcCtcTt55AY.3.10.000426
ORF893P93TCctAct55B.1.10.000091
ORF893P93LcCtcTt55B.1.1.2740.025253
ORF893P93MCCTATG55B.1.1.70.000004
ORF893P93RcCtcGt25B.1.1.70.000002
ORF893P93RCCTAGA25B.1.1.70.000002
ORF893P93RcCTcGA15B.1.1.70.000001
ORF893P93LcCtcTt55B.1.6090.002397
ORF893P93CCCtTGt44All0.000001
ORF893P93SCctTct44AY.1180.000251
ORF893P93PccTccA44AY.1180.000251
ORF893P93LcCtcTt44AY.1190.000141
ORF893P93delCCT---44AY.30.00004
ORF893P93PccTccC44AY.40.000006
ORF893P93TCctAct44AY.40.000006
ORF893P93TCctAct44AY.430.000018
ORF893P93SCctTct44AY.46.60.000289
ORF893P93SCctTct44AY.470.000124
ORF893P93SCctTct44AY.50.000083
ORF893P93ICCtATt24B.10.000018
ORF893P93ICCTATA24B.10.000018
ORF893P93TCctAct44B.1.1.2140.000222
ORF893P93delCCT---44B.1.1.5190.000159
ORF893P93VCCTGTA24B.1.1.70.000002
ORF893P93VCCTGTG14B.1.1.70.000001
ORF893P93VCCtGTt14B.1.1.70.000001
ORF893P93LcCtcTt44B.1.1770.000053
ORF893P93SCctTct44B.1.1770.000053
ORF893P93SCctTct44B.1.20.000035
ORF893P93delCCT---44B.1.3200.004981
ORF893P93LcCtcTt44B.1.4110.014815
ORF893P93SCctTct44B.1.4290.000094
ORF893P93LcCtcTt44B.1.5960.000349
ORF893P93del2CCt--t44P.10.000063
ORF893P93HcCtcAt44P.10.000063
ORF893P93delCCT---44P.1.10.001271
ORF893P93LcCtcTt44P.1.170.000647
ORF893P93SCctTct33A.280.007937
ORF893P93TCctAct33AY.140.000264
ORF893P93SCctTct33AY.20.001068
ORF893P93LcCtcTt33AY.200.000117
ORF893P93LcCtcTt33AY.230.000209
ORF893P93delCCT---33AY.260.000085
ORF893P93LcCtcTt33AY.340.000291
ORF893P93LcCtcTt33AY.4.20.000065
ORF893P93SCctTct33AY.400.002893
ORF893P93PccTccC23AY.430.000009
ORF893P93PccTccA13AY.430.000004
ORF893P93TCctAct33AY.440.000018
ORF893P93HcCtcAt33AY.440.000018
ORF893P93SCctTct33AY.450.000365
ORF893P93SCctTct33AY.460.000312
ORF893P93LcCtcTt33AY.470.000093
ORF893P93SCctTct33AY.5.30.001012
ORF893P93SCctTct33AY.680.000821
ORF893P93LcCtcTt33B.1.1.2940.003797
ORF893P93HcCtcAt33B.1.1.3690.001339
ORF893P93SCctTct33B.1.1.500.002037
ORF893P93CCCtTGt33B.1.1.70.000003
ORF893P93ECCTGAA23B.1.1.70.000002
ORF893P93ECCTGAG13B.1.1.70.000001
ORF893P93delCCT---33B.1.20.000026
ORF893P93delCCT---33B.1.220.003953
ORF893P93LcCtcTt33B.1.2360.00616
ORF893P93del2cCTc--33B.1.258.170.000312
ORF893P93TCctAct33B.1.4290.000071
ORF893P93delCCT---33B.1.4290.000071
ORF893P93delCCT---33B.1.5090.002597
ORF893P93ICCTATA13B.1.5760.000907
ORF893P93ICCtATt13B.1.5760.000907
ORF893P93ICCTATC13B.1.5760.000907
ORF893P93PccTccA23D.20.00015
ORF893P93PccTccC13D.20.000075
ORF893P93delCCT---220.111111
ORF893P93DCCtGAt22All0
ORF893P93HcCtcAt22AY.1030.000012
ORF893P93PccTccC22AY.1030.000012
ORF893P93LcCtcTt22AY.1050.001286
ORF893P93SCctTct22AY.1050.001286
ORF893P93LcCtcTt22AY.1170.000169
ORF893P93SCctTct22AY.120.000632
ORF893P93SCctTct22AY.190.002281
ORF893P93LcCtcTt22AY.4.2.10.000298
ORF893P93TCctAct22AY.420.00008
ORF893P93delCCT---22AY.480.00093
ORF893P93HcCtcAt22AY.50.000041
ORF893P93SCctTct22AY.540.000191
ORF893P93LcCtcTt22AY.550.001835
ORF893P93SCctTct22AY.580.001815
ORF893P93LcCtcTt22AY.60.000082
ORF893P93SCctTct22AY.640.00119
ORF893P93SCctTct22AY.690.000373
ORF893P93TCctAct22AY.70.000392
ORF893P93LcCtcTt22AY.820.002714
ORF893P93LcCtcTt22AY.840.000875
ORF893P93SCctTct22AY.860.00166
ORF893P93TCctAct22AY.880.001768
ORF893P93SCctTct22AY.950.001522
ORF893P93XCCTTAA22B.10.000018
ORF893P93FCCtTTt22B.10.000018
ORF893P93NCCtAAt22B.10.000018
ORF893P93YCCtTAt22B.10.000018
ORF893P93delCCT---22B.10.000018
ORF893P93KCCTAAA22B.10.000018
ORF893P93PccTccA12B.10.000009
ORF893P93PccTccC12B.10.000009
ORF893P93ICCTATA12B.1.10.000018
ORF893P93ICCtATt12B.1.10.000018
ORF893P93delCCT---22B.1.1.2140.000111
ORF893P93LcCtcTt22B.1.1.2690.002706
ORF893P93SCctTct22B.1.1.330.000842
ORF893P93LcCtcTt22B.1.1.3750.02381
ORF893P93LcCtcTt22B.1.1.5190.000079
ORF893P93delCCT---22B.1.1770.000026
ORF893P93SCctTct22B.1.177.230.006472
ORF893P93SCctTct22B.1.177.810.000379
ORF893P93PccTccG12B.1.20.000009
ORF893P93PccTccA12B.1.20.000009
ORF893P93SCctTct22B.1.2340.000264
ORF893P93LcCtcTt22B.1.2580.000133
ORF893P93LcCtcTt22B.1.360.000292
ORF893P93delCCT---22B.1.360.000292
ORF893P93LcCtcTt22B.1.4270.000101
ORF893P93LcCtcTt22B.1.4560.006536
ORF893P93LcCtcTt22B.1.5250.000226
ORF893P93SCctTct22B.1.5260.000047
ORF893P93HcCtcAt22B.1.5260.000047
ORF893P93NCCtAAt12B.1.5760.000907
ORF893P93NCCTAAC12B.1.5760.000907
ORF893P93delCCT---22B.400.000729
ORF893P93TCctAct22C.370.000232
ORF893P93LcCtcTt22C.370.000232
ORF893P93SCctTct22N.90.011905
ORF893P93VCCtGTt12P.10.000016
ORF893P93ICCtATt12P.10.000016
ORF893P93ICCTATA12P.10.000016
ORF893P93VCCTGTA12P.10.000016
ORF893P93LcCTcTA12P.1.150.000232
ORF893P93LcCtcTt12P.1.150.000232
ORF893P93LcCtcTt22P.1.70.000639
ORF893P93PccTccA110.055556
ORF893P93PccTccC11A.10.000282
ORF893P93TCctAct11A.10.000282
ORF893P93delCCT---11AE.40.043478
ORF893P93ACctGct11All0
ORF893P93TCctAct11AV.10.005051
ORF893P93HcCtcAt11AY.1000.000046
ORF893P93LcCtcTt11AY.1000.000046
ORF893P93LcCtcTt11AY.1010.00049
ORF893P93TCctAct11AY.1020.000027
ORF893P93PccTccA11AY.1020.000027
ORF893P93SCctTct11AY.1060.000335
ORF893P93delCCT---11AY.1080.001103
ORF893P93SCctTct11AY.1080.001103
ORF893P93LcCtcTt11AY.1090.00074
ORF893P93LcCtcTt11AY.1100.000113
ORF893P93HcCTcAC11AY.1130.000142
ORF893P93SCctTct11AY.1130.000142
ORF893P93delCCT---11AY.116.10.000311
ORF893P93TCctAct11AY.1170.000085
ORF893P93delCCT---11AY.1180.000063
ORF893P93LcCtcTt11AY.1180.000063
ORF893P93TCctAct11AY.1200.000037
ORF893P93SCctTct11AY.1200.000037
ORF893P93LcCtcTt11AY.120.10.000321
ORF893P93PccTccC11AY.1210.000135
ORF893P93LcCtcTt11AY.130.000161
ORF893P93SCctTct11AY.140.000088
ORF893P93delCCT---11AY.190.00114
ORF893P93delCCT---11AY.20.000356
ORF893P93delCCT---11AY.200.000039
ORF893P93HcCtcAt11AY.250.000006
ORF893P93PccTccC11AY.250.000006
ORF893P93YCCtTAt11AY.250.000006
ORF893P93QcCTcAA11AY.250.000006
ORF893P93XCCTTAA11AY.250.000006
ORF893P93FCCtTTt11AY.250.000006
ORF893P93TCctAct11AY.270.000065
ORF893P93FCCtTTt11AY.290.000016
ORF893P93LcCtcTt11AY.320.000532
ORF893P93del1ccTcc-11AY.34.10.00051
ORF893P93LcCtcTt11AY.34.10.00051
ORF893P93SCctTct11AY.370.000316
ORF893P93delCCT---11AY.390.000025
ORF893P93SCctTct11AY.39.10.00004
ORF893P93ACctGct11AY.4.20.000022
ORF893P93delCCT---11AY.4.20.000022
ORF893P93SCctTct11AY.4.40.000409
ORF893P93LcCtcTt11AY.4.40.000409
ORF893P93delCCT---11AY.440.000006
ORF893P93FCCtTTt11AY.440.000006
ORF893P93TCctAct11AY.460.000104
ORF893P93delCCT---11AY.470.000031
ORF893P93LcCtcTt11AY.50.000021
ORF893P93LcCtcTt11AY.540.000095
ORF893P93delCCT---11AY.580.000907
ORF893P93SCctTct11AY.590.00053
ORF893P93HcCtcAt11AY.60.000041
ORF893P93SCctTct11AY.600.000938
ORF893P93PccTccC11AY.670.000464
ORF893P93LcCtcTt11AY.740.000116
ORF893P93SCctTct11AY.75.10.00018
ORF893P93SCctTct11AY.780.001541
ORF893P93SCctTct11AY.90.000068
ORF893P93SCctTct11AY.9.20.000037
ORF893P93LcCtcTt11AY.920.000287
ORF893P93del1ccTcc-11AY.99.20.000092
ORF893P93LcCtcTt11B0.000128
ORF893P93TCctAct11B0.000128
ORF893P93del1ccTcc-11B.10.000009
ORF893P93YCCtTAt11B.1.10.000018
ORF893P93RcCtcGt11B.1.10.000018
ORF893P93NCCtAAt11B.1.10.000018
ORF893P93KCCTAAA11B.1.10.000018
ORF893P93FCCtTTt11B.1.10.000018
ORF893P93XCCTTAA11B.1.10.000018
ORF893P93LcCtcTt11B.1.1.10.000327
ORF893P93HcCtcAt11B.1.1.1420.017544
ORF893P93LcCtcTt11B.1.1.1700.001247
ORF893P93delCCT---11B.1.1.1740.003378
ORF893P93LcCtcTt11B.1.1.2140.000055
ORF893P93SCctTct11B.1.1.2140.000055
ORF893P93delCCT---11B.1.1.2160.00089
ORF893P93SCctTct11B.1.1.2170.003636
ORF893P93LcCtcTt11B.1.1.2220.000204
ORF893P93delCCT---11B.1.1.2360.006897
ORF893P93LcCtcTt11B.1.1.250.000569
ORF893P93HcCtcAt11B.1.1.2650.003155
ORF893P93SCctTct11B.1.1.280.000311
ORF893P93del1Cct-ct11B.1.1.280.000311
ORF893P93PccTccC11B.1.1.2840.000107
ORF893P93del1Cct-ct11B.1.1.2940.001266
ORF893P93TCctAct11B.1.1.3060.000438
ORF893P93RcCTcGC11B.1.1.3150.008475
ORF893P93SCctTct11B.1.1.3170.000412
ORF893P93delCCT---11B.1.1.3540.004386
ORF893P93LcCtcTt11B.1.1.3560.008547
ORF893P93delCCT---11B.1.1.370.000193
ORF893P93LcCtcTt11B.1.1.40.002976
ORF893P93DCCtGAt11B.1.1.70.000001
ORF893P93SCctTct11B.1.1110.001175
ORF893P93delCCT---11B.1.1260.001276
ORF893P93SCctTct11B.1.1600.000031
ORF893P93SCctTct11B.1.160.200.008929
ORF893P93SCctTct11B.1.177.210.000076
ORF893P93SCctTct11B.1.177.520.001757
ORF893P93PccTccA11B.1.177.60.000977
ORF893P93PccTccA11B.1.177.630.002703
ORF893P93delCCT---11B.1.177.70.000165
ORF893P93delCCT---11B.1.177.830.001481
ORF893P93delCCT---11B.1.1950.005025
ORF893P93FCCtTTt11B.1.20.000009
ORF893P93delCCT---11B.1.2100.002132
ORF893P93TCctAct11B.1.2180.005155
ORF893P93LcCtcTt11B.1.2210.000071
ORF893P93LcCtcTt11B.1.2410.000812
ORF893P93ECCTGAA11B.1.2430.00007
ORF893P93delCCT---11B.1.258.120.007874
ORF893P93delCCT---11B.1.258.170.000104
ORF893P93LcCtcTt11B.1.258.170.000104
ORF893P93SCctTct11B.1.258.30.001675
ORF893P93LcCtcTt11B.1.3050.002151
ORF893P93PccTccC11B.1.3200.001245
ORF893P93delCCT---11B.1.3510.00003
ORF893P93LcCtcTt11B.1.3510.00003
ORF893P93delCCT---11B.1.351.20.000303
ORF893P93SCctTct11B.1.360.000146
ORF893P93TCctAct11B.1.36.100.004785
ORF893P93HcCtcAt11B.1.36.290.000517
ORF893P93LcCtcTt11B.1.36.290.000517
ORF893P93PccTccC11B.1.36.350.002604
ORF893P93SCctTct11B.1.3690.000285
ORF893P93LcCtcTt11B.1.3690.000285
ORF893P93SCctTct11B.1.3900.010638
ORF893P93PccTccC11B.1.4230.010204
ORF893P93TCctAct11B.1.4270.00005
ORF893P93LcCtcTt11B.1.4290.000024
ORF893P93SCctTct11B.1.4450.011765
ORF893P93delCCT---11B.1.466.20.000391
ORF893P93TCctAct11B.1.466.20.000391
ORF893P93delCCT---11B.1.4680.005714
ORF893P93LcCtcTt11B.1.4990.00105
ORF893P93SCctTct11B.1.5250.000113
ORF893P93LcCtcTt11B.1.5260.000024
ORF893P93CCCtTGt11B.1.5400.009709
ORF893P93SCctTct11B.1.5640.000426
ORF893P93LCCTTTA11B.1.5740.002151
ORF893P93PccTccA11B.1.5760.000907
ORF893P93KCCTAAA11B.1.5760.000907
ORF893P93SCctTct11B.1.5960.000087
ORF893P93delCCT---11B.1.5960.000087
ORF893P93delCCT---11B.1.5970.00463
ORF893P93TCctAct11B.1.617.10.000129
ORF893P93LcCtcTt11B.1.617.10.000129
ORF893P93HcCtcAt11B.1.617.20.000004
ORF893P93delCCT---11B.1.6210.000089
ORF893P93LcCtcTt11B.1.6210.000089
ORF893P93TCctAct11B.1.6230.000536
ORF893P93LcCtcTt11B.1.6280.000352
ORF893P93LcCtcTt11B.1.6320.006711
ORF893P93PccTccC11B.30.000831
ORF893P93SCctTct11B.610.005747
ORF893P93LcCtcTt11C.140.004329
ORF893P93delCCT---11C.260.007353
ORF893P93delCCT---11C.360.000911
ORF893P93HcCtcAt11C.37.10.002618
ORF893P93delCCT---11M.30.076923
ORF893P93delCCT---11N.60.007092
ORF893P93ECCTGAA11P.10.000016
ORF893P93KCCTAAA11P.10.000016
ORF893P93DCCtGAt11P.10.000016
ORF893P93RcCtcGt11P.10.000016
ORF893P93NCCtAAt11P.10.000016
ORF893P93LcCtcTt11P.1.10.000318
ORF893P93SCctTct11P.1.100.000269
ORF893P93LcCtcTt11P.1.120.000484
ORF893P93PccTccA11P.1.150.000232
ORF893P93delCCT---11P.1.150.000232
ORF893P93LcCtcTt11P.1.160.000374
ORF893P93SCctTct11P.20.000187
ORF893P93LcCtcTt11P.20.000187
ORF893P93delCCT---11P.60.003145
ORF893P93LcCtcTt11Q.80.000165
ORF893P93SCctTct11Q.80.000165
ORF893P93delCCT---11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.