CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 90 | C90C | syn | tgC | tgT | 1111 | 1111 | 1 | 28161-28163 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 90 | C90C | tgC | tgT | 1111 | 1111 | All | 0.000212 |
ORF8 | 90 | C90C | tgC | tgT | 190 | 190 | B.1.1.7 | 0.00017 |
ORF8 | 90 | C90C | tgC | tgT | 160 | 160 | B.1.617.2 | 0.000602 |
ORF8 | 90 | C90C | tgC | tgT | 114 | 114 | AY.100 | 0.005245 |
ORF8 | 90 | C90C | tgC | tgT | 79 | 79 | AY.61 | 0.008277 |
ORF8 | 90 | C90C | tgC | tgT | 53 | 53 | B.1.305 | 0.113978 |
ORF8 | 90 | C90C | tgC | tgT | 52 | 52 | B.1.348 | 0.945455 |
ORF8 | 90 | C90C | tgC | tgT | 43 | 43 | AY.4 | 0.000067 |
ORF8 | 90 | C90C | tgC | tgT | 24 | 24 | B.1.160 | 0.000749 |
ORF8 | 90 | C90C | tgC | tgT | 21 | 21 | AY.103 | 0.00013 |
ORF8 | 90 | C90C | tgC | tgT | 20 | 20 | AY.29 | 0.000315 |
ORF8 | 90 | C90C | tgC | tgT | 18 | 18 | B.1.36 | 0.002626 |
ORF8 | 90 | C90C | tgC | tgT | 18 | 18 | B.1.637 | 0.001315 |
ORF8 | 90 | C90C | tgC | tgT | 17 | 17 | B.1 | 0.000156 |
ORF8 | 90 | C90C | tgC | tgT | 16 | 16 | AY.4.2 | 0.000347 |
ORF8 | 90 | C90C | tgC | tgT | 13 | 13 | AY.25 | 0.000078 |
ORF8 | 90 | C90C | tgC | tgT | 13 | 13 | B.1.1 | 0.000236 |
ORF8 | 90 | C90C | tgC | tgT | 13 | 13 | B.1.2 | 0.000114 |
ORF8 | 90 | C90C | tgC | tgT | 13 | 13 | B.1.221 | 0.000923 |
ORF8 | 90 | C90C | tgC | tgT | 12 | 12 | AY.44 | 0.000073 |
ORF8 | 90 | C90C | tgC | tgT | 12 | 12 | AY.47 | 0.000373 |
ORF8 | 90 | C90C | tgC | tgT | 11 | 11 | AY.102 | 0.000292 |
ORF8 | 90 | C90C | tgC | tgT | 9 | 9 | AY.43 | 0.00004 |
ORF8 | 90 | C90C | tgC | tgT | 8 | 8 | AY.26 | 0.000226 |
ORF8 | 90 | C90C | tgC | tgT | 7 | 7 | AY.20 | 0.000272 |
ORF8 | 90 | C90C | tgC | tgT | 7 | 7 | AY.39.1 | 0.000277 |
ORF8 | 90 | C90C | tgC | tgT | 7 | 7 | AY.42 | 0.000282 |
ORF8 | 90 | C90C | tgC | tgT | 7 | 7 | AY.9.2 | 0.000257 |
ORF8 | 90 | C90C | tgC | tgT | 7 | 7 | B.1.1.28 | 0.002179 |
ORF8 | 90 | C90C | tgC | tgT | 7 | 7 | B.1.1.33 | 0.002946 |
ORF8 | 90 | C90C | tgC | tgT | 7 | 7 | B.1.1.63 | 0.002701 |
ORF8 | 90 | C90C | tgC | tgT | 7 | 7 | B.1.234 | 0.000924 |
ORF8 | 90 | C90C | tgC | tgT | 6 | 6 | B.1.258.17 | 0.000624 |
ORF8 | 90 | C90C | tgC | tgT | 6 | 6 | B.1.351 | 0.000178 |
ORF8 | 90 | C90C | tgC | tgT | 5 | 5 | B.1.177 | 0.000066 |
ORF8 | 90 | C90C | tgC | tgT | 5 | 5 | B.1.206 | 0.004078 |
ORF8 | 90 | C90C | tgC | tgT | 4 | 4 | AY.5 | 0.000083 |
ORF8 | 90 | C90C | tgC | tgT | 4 | 4 | B.1.1.432 | 0.005063 |
ORF8 | 90 | C90C | tgC | tgT | 4 | 4 | B.1.1.486 | 0.006309 |
ORF8 | 90 | C90C | tgC | tgT | 4 | 4 | B.1.375 | 0.003279 |
ORF8 | 90 | C90C | tgC | tgT | 4 | 4 | B.1.429 | 0.000094 |
ORF8 | 90 | C90C | tgC | tgT | 4 | 4 | P.1.6 | 0.007782 |
ORF8 | 90 | C90C | tgC | tgT | 3 | 3 | AY.33 | 0.0002 |
ORF8 | 90 | C90C | tgC | tgT | 3 | 3 | AY.38 | 0.001498 |
ORF8 | 90 | C90C | tgC | tgT | 3 | 3 | B.1.411 | 0.011111 |
ORF8 | 90 | C90C | tgC | tgT | 3 | 3 | P.1 | 0.000047 |
ORF8 | 90 | C90C | tgC | tgT | 2 | 2 | AY.46 | 0.000208 |
ORF8 | 90 | C90C | tgC | tgT | 2 | 2 | AY.69 | 0.000373 |
ORF8 | 90 | C90C | tgC | tgT | 2 | 2 | B | 0.000256 |
ORF8 | 90 | C90C | tgC | tgT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF8 | 90 | C90C | tgC | tgT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF8 | 90 | C90C | tgC | tgT | 2 | 2 | B.1.575 | 0.000607 |
ORF8 | 90 | C90C | tgC | tgT | 2 | 2 | Q.4 | 0.00091 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | A | 0.000387 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | A.1 | 0.000282 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | A.2.5 | 0.000499 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AD.2 | 0.000219 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.108 | 0.001103 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.111 | 0.000183 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.120 | 0.000037 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.16.1 | 0.00047 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.3.1 | 0.000085 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.30 | 0.000396 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.34 | 0.000097 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.35 | 0.000233 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.39 | 0.000025 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.39.2 | 0.001541 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.4.5 | 0.000107 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.55 | 0.000917 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.71 | 0.000475 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | AY.94 | 0.000443 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.1.101 | 0.01 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.1.170 | 0.001247 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.1.205 | 0.003717 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.160.20 | 0.008929 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.177.54 | 0.000606 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.243 | 0.00007 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.258 | 0.000067 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.400 | 0.000429 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.428.2 | 0.033333 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.523 | 0.002451 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.526 | 0.000024 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.576 | 0.000907 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.582 | 0.000491 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.619.1 | 0.000641 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.1.621 | 0.000089 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.40 | 0.000364 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | B.6.6 | 0.000889 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | C.1.2 | 0.004255 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | C.26 | 0.007353 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | C.36.3 | 0.000567 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | C.37 | 0.000116 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | L.3 | 0.003546 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | P.1.15 | 0.000232 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | P.2 | 0.000187 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | Q.1 | 0.000126 |
ORF8 | 90 | C90C | tgC | tgT | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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