CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 80 & Codon = ---
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| ORF8 | 80 | T80del | del | ACA | --- | 703 | 703 | 1 | 28131-28133 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| ORF8 | 80 | T80del | ACA | --- | 703 | 703 | All | 0.000134 |
| ORF8 | 80 | T80del | ACA | --- | 139 | 139 | B.1.1.7 | 0.000124 |
| ORF8 | 80 | T80del | ACA | --- | 60 | 60 | AY.4 | 0.000093 |
| ORF8 | 80 | T80del | ACA | --- | 58 | 58 | B.1.1.294 | 0.073418 |
| ORF8 | 80 | T80del | ACA | --- | 45 | 45 | B.1.351 | 0.001338 |
| ORF8 | 80 | T80del | ACA | --- | 37 | 37 | AY.29 | 0.000584 |
| ORF8 | 80 | T80del | ACA | --- | 34 | 34 | B.1.1 | 0.000617 |
| ORF8 | 80 | T80del | ACA | --- | 34 | 34 | B.1.243 | 0.002366 |
| ORF8 | 80 | T80del | ACA | --- | 33 | 33 | B.1.1.222 | 0.006732 |
| ORF8 | 80 | T80del | ACA | --- | 28 | 28 | AY.103 | 0.000174 |
| ORF8 | 80 | T80del | ACA | --- | 18 | 18 | B | 0.002301 |
| ORF8 | 80 | T80del | ACA | --- | 17 | 17 | P.1 | 0.000268 |
| ORF8 | 80 | T80del | ACA | --- | 11 | 11 | B.1.1.318 | 0.003319 |
| ORF8 | 80 | T80del | ACA | --- | 11 | 11 | B.1.160 | 0.000343 |
| ORF8 | 80 | T80del | ACA | --- | 10 | 10 | AY.43 | 0.000044 |
| ORF8 | 80 | T80del | ACA | --- | 9 | 9 | B.1.1.284 | 0.000967 |
| ORF8 | 80 | T80del | ACA | --- | 7 | 7 | AY.3 | 0.00007 |
| ORF8 | 80 | T80del | ACA | --- | 7 | 7 | B.1.1.265 | 0.022082 |
| ORF8 | 80 | T80del | ACA | --- | 7 | 7 | B.1.36.16 | 0.009972 |
| ORF8 | 80 | T80del | ACA | --- | 7 | 7 | B.1.617.2 | 0.000026 |
| ORF8 | 80 | T80del | ACA | --- | 6 | 6 | AY.119 | 0.000212 |
| ORF8 | 80 | T80del | ACA | --- | 6 | 6 | B.1.177 | 0.000079 |
| ORF8 | 80 | T80del | ACA | --- | 6 | 6 | P.1.14 | 0.000287 |
| ORF8 | 80 | T80del | ACA | --- | 5 | 5 | AY.118 | 0.000313 |
| ORF8 | 80 | T80del | ACA | --- | 5 | 5 | AY.29.1 | 0.001103 |
| ORF8 | 80 | T80del | ACA | --- | 5 | 5 | B.1.1.519 | 0.000199 |
| ORF8 | 80 | T80del | ACA | --- | 5 | 5 | P.1.1 | 0.001588 |
| ORF8 | 80 | T80del | ACA | --- | 4 | 4 | AY.102 | 0.000106 |
| ORF8 | 80 | T80del | ACA | --- | 4 | 4 | AY.25 | 0.000024 |
| ORF8 | 80 | T80del | ACA | --- | 4 | 4 | B.1.1.214 | 0.000222 |
| ORF8 | 80 | T80del | ACA | --- | 4 | 4 | B.1.2 | 0.000035 |
| ORF8 | 80 | T80del | ACA | --- | 3 | 3 | AY.26 | 0.000085 |
| ORF8 | 80 | T80del | ACA | --- | 3 | 3 | AY.44 | 0.000018 |
| ORF8 | 80 | T80del | ACA | --- | 3 | 3 | B.1.22 | 0.003953 |
| ORF8 | 80 | T80del | ACA | --- | 3 | 3 | B.1.429 | 0.000071 |
| ORF8 | 80 | T80del | ACA | --- | 3 | 3 | B.1.438.1 | 0.000322 |
| ORF8 | 80 | T80del | ACA | --- | 3 | 3 | B.1.509 | 0.002597 |
| ORF8 | 80 | T80del | ACA | --- | 2 | 2 | AY.34 | 0.000194 |
| ORF8 | 80 | T80del | ACA | --- | 2 | 2 | AY.39.1 | 0.000079 |
| ORF8 | 80 | T80del | ACA | --- | 2 | 2 | AY.48 | 0.00093 |
| ORF8 | 80 | T80del | ACA | --- | 2 | 2 | B.1 | 0.000018 |
| ORF8 | 80 | T80del | ACA | --- | 2 | 2 | B.1.36 | 0.000292 |
| ORF8 | 80 | T80del | ACA | --- | 2 | 2 | B.1.427 | 0.000101 |
| ORF8 | 80 | T80del | ACA | --- | 2 | 2 | B.40 | 0.000729 |
| ORF8 | 80 | T80del | ACA | --- | 2 | 2 | P.1.15 | 0.000465 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AE.4 | 0.043478 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.108 | 0.001103 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.116.1 | 0.000311 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.39 | 0.000025 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.4.2 | 0.000022 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.58 | 0.000907 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.69 | 0.000187 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.74 | 0.000116 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.84 | 0.000437 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.174 | 0.003378 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.216 | 0.00089 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.236 | 0.006897 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.25 | 0.000569 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.28 | 0.000311 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.322 | 0.008772 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.506 | 0.037037 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.63 | 0.000386 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.126 | 0.001276 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.177.12 | 0.000152 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.177.7 | 0.000165 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.195 | 0.005025 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.210 | 0.002132 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.258.12 | 0.007874 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.258.17 | 0.000104 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.351.2 | 0.000303 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.468 | 0.005714 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.526 | 0.000024 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.540 | 0.009709 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.596 | 0.000087 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.597 | 0.00463 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.621 | 0.000089 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.34 | 0.013699 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | C.26 | 0.007353 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | C.36 | 0.000911 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | C.37 | 0.000116 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | M.3 | 0.076923 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | N.6 | 0.007092 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | P.1.12 | 0.000484 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | P.1.8 | 0.004785 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | Q.8 | 0.000165 |
| ORF8 | 80 | T80del | ACA | --- | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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