CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 80 | T80T | syn | acA | acT | 9025 | 8983 | 0.995346 | 28131-28133 | |
ORF8 | 80 | T80T | syn | acA | acG | 9025 | 40 | 0.00443213 | 28131-28133 | |
ORF8 | 80 | T80T | syn | acA | acC | 9025 | 2 | 0.000221607 | 28131-28133 | |
ORF8 | 80 | T80E | nonsyn | ACa | GAa | 1971 | 1971 | 1 | 28131-28133 | |
ORF8 | 80 | T80I | nonsyn | aCa | aTa | 1298 | 1296 | 0.998459 | 28131-28133 | |
ORF8 | 80 | T80I | nonsyn | aCA | aTT | 1298 | 2 | 0.00154083 | 28131-28133 | |
ORF8 | 80 | T80del | del | ACA | --- | 703 | 703 | 1 | 28131-28133 | |
ORF8 | 80 | T80del1 | del | AcA | Tc- | 59 | 30 | 0.508475 | 28131-28133 | |
ORF8 | 80 | T80del1 | del | ACa | -Ta | 59 | 22 | 0.372881 | 28131-28133 | |
ORF8 | 80 | T80del1 | del | acA | ac- | 59 | 3 | 0.0508475 | 28131-28133 | |
ORF8 | 80 | T80del1 | del | Aca | -ca | 59 | 3 | 0.0508475 | 28131-28133 | |
ORF8 | 80 | T80del1 | del | ACA | -NN | 59 | 1 | 0.0169492 | 28131-28133 | |
ORF8 | 80 | T80K | nonsyn | aCa | aAa | 30 | 30 | 1 | 28131-28133 | |
ORF8 | 80 | T80A | nonsyn | Aca | Gca | 26 | 26 | 1 | 28131-28133 | |
ORF8 | 80 | T80D | nonsyn | ACA | GAC | 16 | 16 | 1 | 28131-28133 | |
ORF8 | 80 | T80S | nonsyn | Aca | Tca | 15 | 14 | 0.933333 | 28131-28133 | |
ORF8 | 80 | T80S | nonsyn | AcA | TcG | 15 | 1 | 0.0666667 | 28131-28133 | |
ORF8 | 80 | T80V | nonsyn | ACa | GTa | 5 | 5 | 1 | 28131-28133 | |
ORF8 | 80 | T80del2 | del | ACa | --a | 5 | 4 | 0.8 | 28131-28133 | |
ORF8 | 80 | T80del2 | del | aCA | a-- | 5 | 1 | 0.2 | 28131-28133 | |
ORF8 | 80 | T80L | nonsyn | ACa | TTa | 4 | 4 | 1 | 28131-28133 | |
ORF8 | 80 | T80M | nonsyn | aCA | aTG | 2 | 2 | 1 | 28131-28133 | |
ORF8 | 80 | T80X | nonsyn | ACA | TAG | 2 | 2 | 1 | 28131-28133 | |
ORF8 | 80 | T80F | nonsyn | ACA | TTT | 1 | 1 | 1 | 28131-28133 | |
ORF8 | 80 | T80P | nonsyn | Aca | Cca | 1 | 1 | 1 | 28131-28133 | |
ORF8 | 80 | T80R | nonsyn | aCa | aGa | 1 | 1 | 1 | 28131-28133 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 80 | T80T | acA | acT | 8983 | 9025 | All | 0.001718 |
ORF8 | 80 | T80T | acA | acG | 40 | 9025 | All | 0.000008 |
ORF8 | 80 | T80T | acA | acC | 2 | 9025 | All | 0 |
ORF8 | 80 | T80T | acA | acT | 6683 | 6684 | B.1.221 | 0.474712 |
ORF8 | 80 | T80T | acA | acG | 1 | 6684 | B.1.221 | 0.000071 |
ORF8 | 80 | T80E | ACa | GAa | 1971 | 1971 | All | 0.000377 |
ORF8 | 80 | T80E | ACa | GAa | 1922 | 1922 | B.1.1.7 | 0.001721 |
ORF8 | 80 | T80I | aCa | aTa | 1296 | 1298 | All | 0.000248 |
ORF8 | 80 | T80I | aCA | aTT | 2 | 1298 | All | 0 |
ORF8 | 80 | T80T | acA | acT | 1196 | 1196 | B.1.221.3 | 0.996667 |
ORF8 | 80 | T80del | ACA | --- | 703 | 703 | All | 0.000134 |
ORF8 | 80 | T80T | acA | acT | 631 | 631 | B.1.524 | 0.887482 |
ORF8 | 80 | T80I | aCa | aTa | 474 | 474 | B.1.1.7 | 0.000424 |
ORF8 | 80 | T80I | aCa | aTa | 264 | 264 | AY.4 | 0.000411 |
ORF8 | 80 | T80T | acA | acT | 247 | 247 | B.1.221.2 | 0.991968 |
ORF8 | 80 | T80del | ACA | --- | 139 | 139 | B.1.1.7 | 0.000124 |
ORF8 | 80 | T80I | aCa | aTa | 121 | 121 | B.1.2 | 0.001065 |
ORF8 | 80 | T80I | aCa | aTa | 117 | 117 | B.1.429 | 0.002753 |
ORF8 | 80 | T80T | acA | acT | 101 | 104 | B.1 | 0.000925 |
ORF8 | 80 | T80T | acA | acG | 2 | 104 | B.1 | 0.000018 |
ORF8 | 80 | T80T | acA | acC | 1 | 104 | B.1 | 0.000009 |
ORF8 | 80 | T80I | aCa | aTa | 76 | 77 | AY.3 | 0.000756 |
ORF8 | 80 | T80I | aCA | aTT | 1 | 77 | AY.3 | 0.00001 |
ORF8 | 80 | T80del | ACA | --- | 60 | 60 | AY.4 | 0.000093 |
ORF8 | 80 | T80del1 | AcA | Tc- | 30 | 59 | All | 0.000006 |
ORF8 | 80 | T80del1 | ACa | -Ta | 22 | 59 | All | 0.000004 |
ORF8 | 80 | T80del1 | Aca | -ca | 3 | 59 | All | 0.000001 |
ORF8 | 80 | T80del1 | acA | ac- | 3 | 59 | All | 0.000001 |
ORF8 | 80 | T80del1 | ACA | -NN | 1 | 59 | All | 0 |
ORF8 | 80 | T80del | ACA | --- | 58 | 58 | B.1.1.294 | 0.073418 |
ORF8 | 80 | T80del | ACA | --- | 45 | 45 | B.1.351 | 0.001338 |
ORF8 | 80 | T80I | aCa | aTa | 43 | 43 | B.1.36.18 | 0.018067 |
ORF8 | 80 | T80I | aCa | aTa | 40 | 40 | AY.43 | 0.000177 |
ORF8 | 80 | T80del | ACA | --- | 37 | 37 | AY.29 | 0.000584 |
ORF8 | 80 | T80del | ACA | --- | 34 | 34 | B.1.1 | 0.000617 |
ORF8 | 80 | T80del | ACA | --- | 34 | 34 | B.1.243 | 0.002366 |
ORF8 | 80 | T80del1 | AcA | Tc- | 27 | 33 | AY.4 | 0.000042 |
ORF8 | 80 | T80del1 | ACa | -Ta | 6 | 33 | AY.4 | 0.000009 |
ORF8 | 80 | T80del | ACA | --- | 33 | 33 | B.1.1.222 | 0.006732 |
ORF8 | 80 | T80K | aCa | aAa | 30 | 30 | All | 0.000006 |
ORF8 | 80 | T80del | ACA | --- | 28 | 28 | AY.103 | 0.000174 |
ORF8 | 80 | T80I | aCa | aTa | 28 | 28 | B.1.526 | 0.000658 |
ORF8 | 80 | T80A | Aca | Gca | 26 | 26 | All | 0.000005 |
ORF8 | 80 | T80K | aCa | aAa | 23 | 23 | B.1.1.7 | 0.000021 |
ORF8 | 80 | T80I | aCa | aTa | 23 | 23 | B.1.617.2 | 0.000087 |
ORF8 | 80 | T80del | ACA | --- | 18 | 18 | B | 0.002301 |
ORF8 | 80 | T80A | Aca | Gca | 17 | 17 | B.1.1.7 | 0.000015 |
ORF8 | 80 | T80del | ACA | --- | 17 | 17 | P.1 | 0.000268 |
ORF8 | 80 | T80D | ACA | GAC | 16 | 16 | All | 0.000003 |
ORF8 | 80 | T80D | ACA | GAC | 16 | 16 | B.1.1.7 | 0.000014 |
ORF8 | 80 | T80S | Aca | Tca | 14 | 15 | All | 0.000003 |
ORF8 | 80 | T80S | AcA | TcG | 1 | 15 | All | 0 |
ORF8 | 80 | T80T | acA | acT | 14 | 14 | B.1.177 | 0.000184 |
ORF8 | 80 | T80T | acA | acT | 14 | 14 | B.6.6 | 0.012444 |
ORF8 | 80 | T80T | acA | acG | 12 | 12 | AY.103 | 0.000075 |
ORF8 | 80 | T80I | aCa | aTa | 11 | 11 | AY.25 | 0.000066 |
ORF8 | 80 | T80del | ACA | --- | 11 | 11 | B.1.1.318 | 0.003319 |
ORF8 | 80 | T80T | acA | acG | 6 | 11 | B.1.1.7 | 0.000005 |
ORF8 | 80 | T80T | acA | acT | 5 | 11 | B.1.1.7 | 0.000004 |
ORF8 | 80 | T80del | ACA | --- | 11 | 11 | B.1.160 | 0.000343 |
ORF8 | 80 | T80T | acA | acG | 6 | 10 | AY.4 | 0.000009 |
ORF8 | 80 | T80T | acA | acT | 3 | 10 | AY.4 | 0.000005 |
ORF8 | 80 | T80T | acA | acC | 1 | 10 | AY.4 | 0.000002 |
ORF8 | 80 | T80del | ACA | --- | 10 | 10 | AY.43 | 0.000044 |
ORF8 | 80 | T80del1 | ACa | -Ta | 10 | 10 | B.1.1 | 0.000181 |
ORF8 | 80 | T80del | ACA | --- | 9 | 9 | B.1.1.284 | 0.000967 |
ORF8 | 80 | T80T | acA | acT | 9 | 9 | B.1.210 | 0.01919 |
ORF8 | 80 | T80del | ACA | --- | 7 | 7 | AY.3 | 0.00007 |
ORF8 | 80 | T80I | aCa | aTa | 7 | 7 | AY.39 | 0.000173 |
ORF8 | 80 | T80E | ACa | GAa | 7 | 7 | AY.4 | 0.000011 |
ORF8 | 80 | T80I | aCa | aTa | 7 | 7 | B.1 | 0.000064 |
ORF8 | 80 | T80del | ACA | --- | 7 | 7 | B.1.1.265 | 0.022082 |
ORF8 | 80 | T80I | aCa | aTa | 7 | 7 | B.1.1.519 | 0.000278 |
ORF8 | 80 | T80T | acA | acT | 7 | 7 | B.1.160.32 | 0.030043 |
ORF8 | 80 | T80T | acA | acT | 6 | 7 | B.1.2 | 0.000053 |
ORF8 | 80 | T80T | acA | acG | 1 | 7 | B.1.2 | 0.000009 |
ORF8 | 80 | T80T | acA | acT | 7 | 7 | B.1.36.1 | 0.007982 |
ORF8 | 80 | T80del | ACA | --- | 7 | 7 | B.1.36.16 | 0.009972 |
ORF8 | 80 | T80E | ACa | GAa | 7 | 7 | B.1.429 | 0.000165 |
ORF8 | 80 | T80del | ACA | --- | 7 | 7 | B.1.617.2 | 0.000026 |
ORF8 | 80 | T80del | ACA | --- | 6 | 6 | AY.119 | 0.000212 |
ORF8 | 80 | T80del | ACA | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF8 | 80 | T80del | ACA | --- | 6 | 6 | P.1.14 | 0.000287 |
ORF8 | 80 | T80V | ACa | GTa | 5 | 5 | All | 0.000001 |
ORF8 | 80 | T80del2 | ACa | --a | 4 | 5 | All | 0.000001 |
ORF8 | 80 | T80del2 | aCA | a-- | 1 | 5 | All | 0 |
ORF8 | 80 | T80del | ACA | --- | 5 | 5 | AY.118 | 0.000313 |
ORF8 | 80 | T80del | ACA | --- | 5 | 5 | AY.29.1 | 0.001103 |
ORF8 | 80 | T80I | aCa | aTa | 5 | 5 | AY.44 | 0.00003 |
ORF8 | 80 | T80E | ACa | GAa | 5 | 5 | B.1.1 | 0.000091 |
ORF8 | 80 | T80T | acA | acT | 5 | 5 | B.1.1 | 0.000091 |
ORF8 | 80 | T80del | ACA | --- | 5 | 5 | B.1.1.519 | 0.000199 |
ORF8 | 80 | T80V | ACa | GTa | 5 | 5 | B.1.1.7 | 0.000004 |
ORF8 | 80 | T80T | acA | acT | 5 | 5 | B.1.160 | 0.000156 |
ORF8 | 80 | T80T | acA | acT | 5 | 5 | B.1.177.73 | 0.002831 |
ORF8 | 80 | T80S | Aca | Tca | 5 | 5 | B.1.617.2 | 0.000019 |
ORF8 | 80 | T80del1 | ACa | -Ta | 5 | 5 | P.1 | 0.000079 |
ORF8 | 80 | T80del | ACA | --- | 5 | 5 | P.1.1 | 0.001588 |
ORF8 | 80 | T80L | ACa | TTa | 4 | 4 | All | 0.000001 |
ORF8 | 80 | T80del | ACA | --- | 4 | 4 | AY.102 | 0.000106 |
ORF8 | 80 | T80del | ACA | --- | 4 | 4 | AY.25 | 0.000024 |
ORF8 | 80 | T80T | acA | acT | 4 | 4 | AY.9.1 | 0.000335 |
ORF8 | 80 | T80I | aCa | aTa | 4 | 4 | AY.9.1 | 0.000335 |
ORF8 | 80 | T80T | acA | acT | 4 | 4 | B | 0.000511 |
ORF8 | 80 | T80del | ACA | --- | 4 | 4 | B.1.1.214 | 0.000222 |
ORF8 | 80 | T80E | ACa | GAa | 4 | 4 | B.1.177 | 0.000053 |
ORF8 | 80 | T80T | acA | acT | 4 | 4 | B.1.177.40 | 0.020619 |
ORF8 | 80 | T80del | ACA | --- | 4 | 4 | B.1.2 | 0.000035 |
ORF8 | 80 | T80T | acA | acG | 3 | 3 | A.2.5.3 | 0.030928 |
ORF8 | 80 | T80del | ACA | --- | 3 | 3 | AY.26 | 0.000085 |
ORF8 | 80 | T80I | aCa | aTa | 3 | 3 | AY.35 | 0.000699 |
ORF8 | 80 | T80A | Aca | Gca | 3 | 3 | AY.44 | 0.000018 |
ORF8 | 80 | T80del | ACA | --- | 3 | 3 | AY.44 | 0.000018 |
ORF8 | 80 | T80A | Aca | Gca | 3 | 3 | B.1 | 0.000027 |
ORF8 | 80 | T80K | aCa | aAa | 3 | 3 | B.1 | 0.000027 |
ORF8 | 80 | T80I | aCa | aTa | 3 | 3 | B.1.1.157 | 0.00274 |
ORF8 | 80 | T80I | aCa | aTa | 3 | 3 | B.1.177 | 0.00004 |
ORF8 | 80 | T80del | ACA | --- | 3 | 3 | B.1.22 | 0.003953 |
ORF8 | 80 | T80I | aCa | aTa | 3 | 3 | B.1.258 | 0.0002 |
ORF8 | 80 | T80T | acA | acT | 3 | 3 | B.1.336 | 0.007317 |
ORF8 | 80 | T80del | ACA | --- | 3 | 3 | B.1.429 | 0.000071 |
ORF8 | 80 | T80del | ACA | --- | 3 | 3 | B.1.438.1 | 0.000322 |
ORF8 | 80 | T80del | ACA | --- | 3 | 3 | B.1.509 | 0.002597 |
ORF8 | 80 | T80I | aCa | aTa | 2 | 2 | A.23.1 | 0.001408 |
ORF8 | 80 | T80M | aCA | aTG | 2 | 2 | All | 0 |
ORF8 | 80 | T80X | ACA | TAG | 2 | 2 | All | 0 |
ORF8 | 80 | T80I | aCa | aTa | 2 | 2 | AY.103 | 0.000012 |
ORF8 | 80 | T80E | ACa | GAa | 2 | 2 | AY.103 | 0.000012 |
ORF8 | 80 | T80I | aCa | aTa | 2 | 2 | AY.26 | 0.000057 |
ORF8 | 80 | T80del | ACA | --- | 2 | 2 | AY.34 | 0.000194 |
ORF8 | 80 | T80del1 | AcA | Tc- | 2 | 2 | AY.37 | 0.000632 |
ORF8 | 80 | T80S | Aca | Tca | 2 | 2 | AY.39 | 0.000049 |
ORF8 | 80 | T80del | ACA | --- | 2 | 2 | AY.39.1 | 0.000079 |
ORF8 | 80 | T80K | aCa | aAa | 2 | 2 | AY.43 | 0.000009 |
ORF8 | 80 | T80S | Aca | Tca | 2 | 2 | AY.44 | 0.000012 |
ORF8 | 80 | T80T | acA | acG | 1 | 2 | AY.44 | 0.000006 |
ORF8 | 80 | T80T | acA | acT | 1 | 2 | AY.44 | 0.000006 |
ORF8 | 80 | T80del | ACA | --- | 2 | 2 | AY.48 | 0.00093 |
ORF8 | 80 | T80I | aCa | aTa | 2 | 2 | AY.5 | 0.000041 |
ORF8 | 80 | T80K | aCa | aAa | 2 | 2 | AY.98.1 | 0.000097 |
ORF8 | 80 | T80I | aCa | aTa | 2 | 2 | AY.98.1 | 0.000097 |
ORF8 | 80 | T80del | ACA | --- | 2 | 2 | B.1 | 0.000018 |
ORF8 | 80 | T80E | ACa | GAa | 2 | 2 | B.1 | 0.000018 |
ORF8 | 80 | T80T | acA | acT | 2 | 2 | B.1.1.161 | 0.007067 |
ORF8 | 80 | T80T | acA | acT | 2 | 2 | B.1.1.294 | 0.002532 |
ORF8 | 80 | T80I | aCa | aTa | 2 | 2 | B.1.1.318 | 0.000604 |
ORF8 | 80 | T80M | aCA | aTG | 2 | 2 | B.1.1.7 | 0.000002 |
ORF8 | 80 | T80del1 | acA | ac- | 1 | 2 | B.1.1.7 | 0.000001 |
ORF8 | 80 | T80del1 | Aca | -ca | 1 | 2 | B.1.1.7 | 0.000001 |
ORF8 | 80 | T80T | acA | acT | 2 | 2 | B.1.177.86 | 0.000367 |
ORF8 | 80 | T80E | ACa | GAa | 2 | 2 | B.1.2 | 0.000018 |
ORF8 | 80 | T80E | ACa | GAa | 2 | 2 | B.1.258.17 | 0.000208 |
ORF8 | 80 | T80del | ACA | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF8 | 80 | T80del | ACA | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF8 | 80 | T80del2 | ACa | --a | 2 | 2 | B.1.429 | 0.000047 |
ORF8 | 80 | T80T | acA | acG | 1 | 2 | B.1.617.2 | 0.000004 |
ORF8 | 80 | T80T | acA | acT | 1 | 2 | B.1.617.2 | 0.000004 |
ORF8 | 80 | T80E | ACa | GAa | 2 | 2 | B.1.621 | 0.000177 |
ORF8 | 80 | T80del | ACA | --- | 2 | 2 | B.40 | 0.000729 |
ORF8 | 80 | T80I | aCa | aTa | 2 | 2 | D.2 | 0.00015 |
ORF8 | 80 | T80E | ACa | GAa | 2 | 2 | P.1 | 0.000032 |
ORF8 | 80 | T80I | aCa | aTa | 2 | 2 | P.1.14 | 0.000096 |
ORF8 | 80 | T80del | ACA | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF8 | 80 | T80E | ACa | GAa | 2 | 2 | Q.1 | 0.000253 |
ORF8 | 80 | T80E | ACa | GAa | 2 | 2 | Q.8 | 0.00033 |
ORF8 | 80 | T80I | aCa | aTa | 2 | 2 | Q.8 | 0.00033 |
ORF8 | 80 | T80T | acA | acG | 1 | 1 | A | 0.000387 |
ORF8 | 80 | T80T | acA | acG | 1 | 1 | A.2.5 | 0.000499 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | A.2.5.1 | 0.004808 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AE.4 | 0.043478 |
ORF8 | 80 | T80F | ACA | TTT | 1 | 1 | All | 0 |
ORF8 | 80 | T80P | Aca | Cca | 1 | 1 | All | 0 |
ORF8 | 80 | T80R | aCa | aGa | 1 | 1 | All | 0 |
ORF8 | 80 | T80A | Aca | Gca | 1 | 1 | AY.100 | 0.000046 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.102 | 0.000027 |
ORF8 | 80 | T80S | Aca | Tca | 1 | 1 | AY.103 | 0.000006 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.108 | 0.001103 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.116.1 | 0.000311 |
ORF8 | 80 | T80del1 | Aca | -ca | 1 | 1 | AY.118 | 0.000063 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.118 | 0.000063 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.119 | 0.000035 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.120 | 0.000037 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.14 | 0.000088 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.2 | 0.000356 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.20 | 0.000039 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.23 | 0.00007 |
ORF8 | 80 | T80X | ACA | TAG | 1 | 1 | AY.26 | 0.000028 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.29 | 0.000016 |
ORF8 | 80 | T80del2 | ACa | --a | 1 | 1 | AY.29 | 0.000016 |
ORF8 | 80 | T80E | ACa | GAa | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 80 | T80L | ACa | TTa | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 80 | T80F | ACA | TTT | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.34 | 0.000097 |
ORF8 | 80 | T80del1 | AcA | Tc- | 1 | 1 | AY.39 | 0.000025 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.39.1 | 0.00004 |
ORF8 | 80 | T80S | Aca | Tca | 1 | 1 | AY.4 | 0.000002 |
ORF8 | 80 | T80X | ACA | TAG | 1 | 1 | AY.4 | 0.000002 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.42 | 0.00004 |
ORF8 | 80 | T80del1 | acA | ac- | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.46 | 0.000104 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.46.4 | 0.000165 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.46.5 | 0.000198 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.46.6 | 0.000072 |
ORF8 | 80 | T80del1 | acA | ac- | 1 | 1 | AY.47 | 0.000031 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.54 | 0.000095 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.58 | 0.000907 |
ORF8 | 80 | T80del1 | ACA | -NN | 1 | 1 | AY.67 | 0.000464 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.69 | 0.000187 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.70 | 0.000209 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.74 | 0.000116 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.79 | 0.001211 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.84 | 0.000437 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | AY.84 | 0.000437 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.88 | 0.000884 |
ORF8 | 80 | T80E | ACa | GAa | 1 | 1 | AY.9.2 | 0.000037 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | AY.98 | 0.000079 |
ORF8 | 80 | T80S | Aca | Tca | 1 | 1 | B | 0.000128 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.1.162 | 0.029412 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF8 | 80 | T80E | ACa | GAa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | B.1.1.216 | 0.00089 |
ORF8 | 80 | T80T | acA | acG | 1 | 1 | B.1.1.222 | 0.000204 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.236 | 0.006897 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.1.267 | 0.010101 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.322 | 0.008772 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.1.462 | 0.008621 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.506 | 0.037037 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.1.54 | 0.003021 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.1.63 | 0.000386 |
ORF8 | 80 | T80L | ACa | TTa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF8 | 80 | T80R | aCa | aGa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF8 | 80 | T80del2 | aCA | a-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF8 | 80 | T80S | Aca | Tca | 1 | 1 | B.1.1.7 | 0.000001 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.1.83 | 0.00271 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.116 | 0.011628 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.126 | 0.001276 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.139 | 0.000733 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | B.1.149 | 0.003425 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.157 | 0.002985 |
ORF8 | 80 | T80E | ACa | GAa | 1 | 1 | B.1.160 | 0.000031 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | B.1.160 | 0.000031 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | B.1.160.14 | 0.002119 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.177.12 | 0.000152 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF8 | 80 | T80L | ACa | TTa | 1 | 1 | B.1.177.44 | 0.000519 |
ORF8 | 80 | T80del1 | Aca | -ca | 1 | 1 | B.1.177.63 | 0.002703 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.177.75 | 0.001041 |
ORF8 | 80 | T80E | ACa | GAa | 1 | 1 | B.1.177.81 | 0.000189 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF8 | 80 | T80P | Aca | Cca | 1 | 1 | B.1.177.83 | 0.001481 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.195 | 0.005025 |
ORF8 | 80 | T80del1 | ACa | -Ta | 1 | 1 | B.1.2 | 0.000009 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF8 | 80 | T80I | aCA | aTT | 1 | 1 | B.1.221 | 0.000071 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | B.1.240 | 0.000216 |
ORF8 | 80 | T80T | acA | acG | 1 | 1 | B.1.243 | 0.00007 |
ORF8 | 80 | T80S | Aca | Tca | 1 | 1 | B.1.258 | 0.000067 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.258 | 0.000067 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.258.12 | 0.007874 |
ORF8 | 80 | T80T | acA | acG | 1 | 1 | B.1.258.14 | 0.00098 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.258.20 | 0.015873 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.260 | 0.003344 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.311 | 0.000275 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | B.1.328 | 0.03125 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | B.1.340 | 0.004292 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF8 | 80 | T80E | ACa | GAa | 1 | 1 | B.1.351.3 | 0.000876 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF8 | 80 | T80T | acA | acG | 1 | 1 | B.1.36.38 | 0.001642 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.362 | 0.001541 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | B.1.427 | 0.00005 |
ORF8 | 80 | T80L | ACa | TTa | 1 | 1 | B.1.429 | 0.000024 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.473 | 0.019231 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.526 | 0.000024 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.540 | 0.009709 |
ORF8 | 80 | T80del2 | ACa | --a | 1 | 1 | B.1.549 | 0.007194 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.560 | 0.00463 |
ORF8 | 80 | T80A | Aca | Gca | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 80 | T80E | ACa | GAa | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.597 | 0.00463 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.606 | 0.006024 |
ORF8 | 80 | T80T | acA | acT | 1 | 1 | B.1.609 | 0.000479 |
ORF8 | 80 | T80E | ACa | GAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF8 | 80 | T80A | Aca | Gca | 1 | 1 | B.1.621 | 0.000089 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF8 | 80 | T80E | ACa | GAa | 1 | 1 | B.1.637 | 0.000073 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | B.30 | 0.014706 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | B.34 | 0.013699 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | C.26 | 0.007353 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | C.36 | 0.000911 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | C.36 | 0.000911 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | C.37 | 0.000116 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | C.37 | 0.000116 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | M.3 | 0.076923 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | N.6 | 0.007092 |
ORF8 | 80 | T80I | aCa | aTa | 1 | 1 | P.1 | 0.000016 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | P.1.8 | 0.004785 |
ORF8 | 80 | T80T | acA | acG | 1 | 1 | P.2 | 0.000187 |
ORF8 | 80 | T80S | AcA | TcG | 1 | 1 | Q.1 | 0.000126 |
ORF8 | 80 | T80E | ACa | GAa | 1 | 1 | Q.3 | 0.000145 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | Q.8 | 0.000165 |
ORF8 | 80 | T80del | ACA | --- | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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