CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 80

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF880T80TsynacAacT902589830.99534628131-28133
ORF880T80TsynacAacG9025400.0044321328131-28133
ORF880T80TsynacAacC902520.00022160728131-28133
ORF880T80EnonsynACaGAa19711971128131-28133
ORF880T80InonsynaCaaTa129812960.99845928131-28133
ORF880T80InonsynaCAaTT129820.0015408328131-28133
ORF880T80deldelACA---703703128131-28133
ORF880T80del1delAcATc-59300.50847528131-28133
ORF880T80del1delACa-Ta59220.37288128131-28133
ORF880T80del1delacAac-5930.050847528131-28133
ORF880T80del1delAca-ca5930.050847528131-28133
ORF880T80del1delACA-NN5910.016949228131-28133
ORF880T80KnonsynaCaaAa3030128131-28133
ORF880T80AnonsynAcaGca2626128131-28133
ORF880T80DnonsynACAGAC1616128131-28133
ORF880T80SnonsynAcaTca15140.93333328131-28133
ORF880T80SnonsynAcATcG1510.066666728131-28133
ORF880T80VnonsynACaGTa55128131-28133
ORF880T80del2delACa--a540.828131-28133
ORF880T80del2delaCAa--510.228131-28133
ORF880T80LnonsynACaTTa44128131-28133
ORF880T80MnonsynaCAaTG22128131-28133
ORF880T80XnonsynACATAG22128131-28133
ORF880T80FnonsynACATTT11128131-28133
ORF880T80PnonsynAcaCca11128131-28133
ORF880T80RnonsynaCaaGa11128131-28133

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF880T80TacAacT89839025All0.001718
ORF880T80TacAacG409025All0.000008
ORF880T80TacAacC29025All0
ORF880T80TacAacT66836684B.1.2210.474712
ORF880T80TacAacG16684B.1.2210.000071
ORF880T80EACaGAa19711971All0.000377
ORF880T80EACaGAa19221922B.1.1.70.001721
ORF880T80IaCaaTa12961298All0.000248
ORF880T80IaCAaTT21298All0
ORF880T80TacAacT11961196B.1.221.30.996667
ORF880T80delACA---703703All0.000134
ORF880T80TacAacT631631B.1.5240.887482
ORF880T80IaCaaTa474474B.1.1.70.000424
ORF880T80IaCaaTa264264AY.40.000411
ORF880T80TacAacT247247B.1.221.20.991968
ORF880T80delACA---139139B.1.1.70.000124
ORF880T80IaCaaTa121121B.1.20.001065
ORF880T80IaCaaTa117117B.1.4290.002753
ORF880T80TacAacT101104B.10.000925
ORF880T80TacAacG2104B.10.000018
ORF880T80TacAacC1104B.10.000009
ORF880T80IaCaaTa7677AY.30.000756
ORF880T80IaCAaTT177AY.30.00001
ORF880T80delACA---6060AY.40.000093
ORF880T80del1AcATc-3059All0.000006
ORF880T80del1ACa-Ta2259All0.000004
ORF880T80del1Aca-ca359All0.000001
ORF880T80del1acAac-359All0.000001
ORF880T80del1ACA-NN159All0
ORF880T80delACA---5858B.1.1.2940.073418
ORF880T80delACA---4545B.1.3510.001338
ORF880T80IaCaaTa4343B.1.36.180.018067
ORF880T80IaCaaTa4040AY.430.000177
ORF880T80delACA---3737AY.290.000584
ORF880T80delACA---3434B.1.10.000617
ORF880T80delACA---3434B.1.2430.002366
ORF880T80del1AcATc-2733AY.40.000042
ORF880T80del1ACa-Ta633AY.40.000009
ORF880T80delACA---3333B.1.1.2220.006732
ORF880T80KaCaaAa3030All0.000006
ORF880T80delACA---2828AY.1030.000174
ORF880T80IaCaaTa2828B.1.5260.000658
ORF880T80AAcaGca2626All0.000005
ORF880T80KaCaaAa2323B.1.1.70.000021
ORF880T80IaCaaTa2323B.1.617.20.000087
ORF880T80delACA---1818B0.002301
ORF880T80AAcaGca1717B.1.1.70.000015
ORF880T80delACA---1717P.10.000268
ORF880T80DACAGAC1616All0.000003
ORF880T80DACAGAC1616B.1.1.70.000014
ORF880T80SAcaTca1415All0.000003
ORF880T80SAcATcG115All0
ORF880T80TacAacT1414B.1.1770.000184
ORF880T80TacAacT1414B.6.60.012444
ORF880T80TacAacG1212AY.1030.000075
ORF880T80IaCaaTa1111AY.250.000066
ORF880T80delACA---1111B.1.1.3180.003319
ORF880T80TacAacG611B.1.1.70.000005
ORF880T80TacAacT511B.1.1.70.000004
ORF880T80delACA---1111B.1.1600.000343
ORF880T80TacAacG610AY.40.000009
ORF880T80TacAacT310AY.40.000005
ORF880T80TacAacC110AY.40.000002
ORF880T80delACA---1010AY.430.000044
ORF880T80del1ACa-Ta1010B.1.10.000181
ORF880T80delACA---99B.1.1.2840.000967
ORF880T80TacAacT99B.1.2100.01919
ORF880T80delACA---77AY.30.00007
ORF880T80IaCaaTa77AY.390.000173
ORF880T80EACaGAa77AY.40.000011
ORF880T80IaCaaTa77B.10.000064
ORF880T80delACA---77B.1.1.2650.022082
ORF880T80IaCaaTa77B.1.1.5190.000278
ORF880T80TacAacT77B.1.160.320.030043
ORF880T80TacAacT67B.1.20.000053
ORF880T80TacAacG17B.1.20.000009
ORF880T80TacAacT77B.1.36.10.007982
ORF880T80delACA---77B.1.36.160.009972
ORF880T80EACaGAa77B.1.4290.000165
ORF880T80delACA---77B.1.617.20.000026
ORF880T80delACA---66AY.1190.000212
ORF880T80delACA---66B.1.1770.000079
ORF880T80delACA---66P.1.140.000287
ORF880T80VACaGTa55All0.000001
ORF880T80del2ACa--a45All0.000001
ORF880T80del2aCAa--15All0
ORF880T80delACA---55AY.1180.000313
ORF880T80delACA---55AY.29.10.001103
ORF880T80IaCaaTa55AY.440.00003
ORF880T80EACaGAa55B.1.10.000091
ORF880T80TacAacT55B.1.10.000091
ORF880T80delACA---55B.1.1.5190.000199
ORF880T80VACaGTa55B.1.1.70.000004
ORF880T80TacAacT55B.1.1600.000156
ORF880T80TacAacT55B.1.177.730.002831
ORF880T80SAcaTca55B.1.617.20.000019
ORF880T80del1ACa-Ta55P.10.000079
ORF880T80delACA---55P.1.10.001588
ORF880T80LACaTTa44All0.000001
ORF880T80delACA---44AY.1020.000106
ORF880T80delACA---44AY.250.000024
ORF880T80TacAacT44AY.9.10.000335
ORF880T80IaCaaTa44AY.9.10.000335
ORF880T80TacAacT44B0.000511
ORF880T80delACA---44B.1.1.2140.000222
ORF880T80EACaGAa44B.1.1770.000053
ORF880T80TacAacT44B.1.177.400.020619
ORF880T80delACA---44B.1.20.000035
ORF880T80TacAacG33A.2.5.30.030928
ORF880T80delACA---33AY.260.000085
ORF880T80IaCaaTa33AY.350.000699
ORF880T80AAcaGca33AY.440.000018
ORF880T80delACA---33AY.440.000018
ORF880T80AAcaGca33B.10.000027
ORF880T80KaCaaAa33B.10.000027
ORF880T80IaCaaTa33B.1.1.1570.00274
ORF880T80IaCaaTa33B.1.1770.00004
ORF880T80delACA---33B.1.220.003953
ORF880T80IaCaaTa33B.1.2580.0002
ORF880T80TacAacT33B.1.3360.007317
ORF880T80delACA---33B.1.4290.000071
ORF880T80delACA---33B.1.438.10.000322
ORF880T80delACA---33B.1.5090.002597
ORF880T80IaCaaTa22A.23.10.001408
ORF880T80MaCAaTG22All0
ORF880T80XACATAG22All0
ORF880T80IaCaaTa22AY.1030.000012
ORF880T80EACaGAa22AY.1030.000012
ORF880T80IaCaaTa22AY.260.000057
ORF880T80delACA---22AY.340.000194
ORF880T80del1AcATc-22AY.370.000632
ORF880T80SAcaTca22AY.390.000049
ORF880T80delACA---22AY.39.10.000079
ORF880T80KaCaaAa22AY.430.000009
ORF880T80SAcaTca22AY.440.000012
ORF880T80TacAacG12AY.440.000006
ORF880T80TacAacT12AY.440.000006
ORF880T80delACA---22AY.480.00093
ORF880T80IaCaaTa22AY.50.000041
ORF880T80KaCaaAa22AY.98.10.000097
ORF880T80IaCaaTa22AY.98.10.000097
ORF880T80delACA---22B.10.000018
ORF880T80EACaGAa22B.10.000018
ORF880T80TacAacT22B.1.1.1610.007067
ORF880T80TacAacT22B.1.1.2940.002532
ORF880T80IaCaaTa22B.1.1.3180.000604
ORF880T80MaCAaTG22B.1.1.70.000002
ORF880T80del1acAac-12B.1.1.70.000001
ORF880T80del1Aca-ca12B.1.1.70.000001
ORF880T80TacAacT22B.1.177.860.000367
ORF880T80EACaGAa22B.1.20.000018
ORF880T80EACaGAa22B.1.258.170.000208
ORF880T80delACA---22B.1.360.000292
ORF880T80delACA---22B.1.4270.000101
ORF880T80del2ACa--a22B.1.4290.000047
ORF880T80TacAacG12B.1.617.20.000004
ORF880T80TacAacT12B.1.617.20.000004
ORF880T80EACaGAa22B.1.6210.000177
ORF880T80delACA---22B.400.000729
ORF880T80IaCaaTa22D.20.00015
ORF880T80EACaGAa22P.10.000032
ORF880T80IaCaaTa22P.1.140.000096
ORF880T80delACA---22P.1.150.000465
ORF880T80EACaGAa22Q.10.000253
ORF880T80EACaGAa22Q.80.00033
ORF880T80IaCaaTa22Q.80.00033
ORF880T80TacAacG11A0.000387
ORF880T80TacAacG11A.2.50.000499
ORF880T80IaCaaTa11A.2.5.10.004808
ORF880T80delACA---11AE.40.043478
ORF880T80FACATTT11All0
ORF880T80PAcaCca11All0
ORF880T80RaCaaGa11All0
ORF880T80AAcaGca11AY.1000.000046
ORF880T80IaCaaTa11AY.1020.000027
ORF880T80SAcaTca11AY.1030.000006
ORF880T80delACA---11AY.1080.001103
ORF880T80delACA---11AY.116.10.000311
ORF880T80del1Aca-ca11AY.1180.000063
ORF880T80IaCaaTa11AY.1180.000063
ORF880T80IaCaaTa11AY.1190.000035
ORF880T80IaCaaTa11AY.1200.000037
ORF880T80IaCaaTa11AY.140.000088
ORF880T80IaCaaTa11AY.20.000356
ORF880T80IaCaaTa11AY.200.000039
ORF880T80IaCaaTa11AY.230.00007
ORF880T80XACATAG11AY.260.000028
ORF880T80IaCaaTa11AY.290.000016
ORF880T80del2ACa--a11AY.290.000016
ORF880T80EACaGAa11AY.30.00001
ORF880T80LACaTTa11AY.30.00001
ORF880T80FACATTT11AY.30.00001
ORF880T80IaCaaTa11AY.340.000097
ORF880T80del1AcATc-11AY.390.000025
ORF880T80delACA---11AY.390.000025
ORF880T80IaCaaTa11AY.39.10.00004
ORF880T80SAcaTca11AY.40.000002
ORF880T80XACATAG11AY.40.000002
ORF880T80delACA---11AY.4.20.000022
ORF880T80IaCaaTa11AY.420.00004
ORF880T80del1acAac-11AY.440.000006
ORF880T80IaCaaTa11AY.460.000104
ORF880T80IaCaaTa11AY.46.40.000165
ORF880T80IaCaaTa11AY.46.50.000198
ORF880T80IaCaaTa11AY.46.60.000072
ORF880T80del1acAac-11AY.470.000031
ORF880T80IaCaaTa11AY.540.000095
ORF880T80delACA---11AY.580.000907
ORF880T80del1ACA-NN11AY.670.000464
ORF880T80delACA---11AY.690.000187
ORF880T80IaCaaTa11AY.700.000209
ORF880T80delACA---11AY.740.000116
ORF880T80IaCaaTa11AY.790.001211
ORF880T80IaCaaTa11AY.840.000437
ORF880T80delACA---11AY.840.000437
ORF880T80IaCaaTa11AY.880.000884
ORF880T80EACaGAa11AY.9.20.000037
ORF880T80IaCaaTa11AY.980.000079
ORF880T80SAcaTca11B0.000128
ORF880T80TacAacT11B.1.1.1620.029412
ORF880T80delACA---11B.1.1.1740.003378
ORF880T80EACaGAa11B.1.1.2140.000055
ORF880T80delACA---11B.1.1.2160.00089
ORF880T80IaCaaTa11B.1.1.2160.00089
ORF880T80TacAacG11B.1.1.2220.000204
ORF880T80delACA---11B.1.1.2360.006897
ORF880T80delACA---11B.1.1.250.000569
ORF880T80IaCaaTa11B.1.1.250.000569
ORF880T80TacAacT11B.1.1.2670.010101
ORF880T80delACA---11B.1.1.280.000311
ORF880T80delACA---11B.1.1.3220.008772
ORF880T80delACA---11B.1.1.370.000193
ORF880T80TacAacT11B.1.1.4620.008621
ORF880T80delACA---11B.1.1.5060.037037
ORF880T80TacAacT11B.1.1.540.003021
ORF880T80delACA---11B.1.1.630.000386
ORF880T80LACaTTa11B.1.1.70.000001
ORF880T80RaCaaGa11B.1.1.70.000001
ORF880T80del2aCAa--11B.1.1.70.000001
ORF880T80SAcaTca11B.1.1.70.000001
ORF880T80TacAacT11B.1.1.830.00271
ORF880T80TacAacT11B.1.1160.011628
ORF880T80delACA---11B.1.1260.001276
ORF880T80TacAacT11B.1.1390.000733
ORF880T80IaCaaTa11B.1.1490.003425
ORF880T80TacAacT11B.1.1570.002985
ORF880T80EACaGAa11B.1.1600.000031
ORF880T80IaCaaTa11B.1.1600.000031
ORF880T80IaCaaTa11B.1.160.140.002119
ORF880T80delACA---11B.1.177.120.000152
ORF880T80IaCaaTa11B.1.177.210.000076
ORF880T80LACaTTa11B.1.177.440.000519
ORF880T80del1Aca-ca11B.1.177.630.002703
ORF880T80delACA---11B.1.177.70.000165
ORF880T80TacAacT11B.1.177.750.001041
ORF880T80EACaGAa11B.1.177.810.000189
ORF880T80TacAacT11B.1.177.810.000189
ORF880T80delACA---11B.1.177.830.001481
ORF880T80PAcaCca11B.1.177.830.001481
ORF880T80delACA---11B.1.1950.005025
ORF880T80del1ACa-Ta11B.1.20.000009
ORF880T80delACA---11B.1.2100.002132
ORF880T80IaCAaTT11B.1.2210.000071
ORF880T80IaCaaTa11B.1.2400.000216
ORF880T80TacAacG11B.1.2430.00007
ORF880T80SAcaTca11B.1.2580.000067
ORF880T80TacAacT11B.1.2580.000067
ORF880T80delACA---11B.1.258.120.007874
ORF880T80TacAacG11B.1.258.140.00098
ORF880T80TacAacT11B.1.258.170.000104
ORF880T80delACA---11B.1.258.170.000104
ORF880T80TacAacT11B.1.258.200.015873
ORF880T80TacAacT11B.1.2600.003344
ORF880T80TacAacT11B.1.3110.000275
ORF880T80IaCaaTa11B.1.3280.03125
ORF880T80IaCaaTa11B.1.3400.004292
ORF880T80delACA---11B.1.351.20.000303
ORF880T80EACaGAa11B.1.351.30.000876
ORF880T80TacAacT11B.1.36.100.004785
ORF880T80TacAacG11B.1.36.380.001642
ORF880T80TacAacT11B.1.3620.001541
ORF880T80IaCaaTa11B.1.4270.00005
ORF880T80LACaTTa11B.1.4290.000024
ORF880T80IaCaaTa11B.1.466.20.000391
ORF880T80delACA---11B.1.4680.005714
ORF880T80TacAacT11B.1.4730.019231
ORF880T80delACA---11B.1.5260.000024
ORF880T80delACA---11B.1.5400.009709
ORF880T80del2ACa--a11B.1.5490.007194
ORF880T80TacAacT11B.1.5600.00463
ORF880T80AAcaGca11B.1.5960.000087
ORF880T80EACaGAa11B.1.5960.000087
ORF880T80TacAacT11B.1.5960.000087
ORF880T80delACA---11B.1.5960.000087
ORF880T80IaCaaTa11B.1.5960.000087
ORF880T80delACA---11B.1.5970.00463
ORF880T80TacAacT11B.1.6060.006024
ORF880T80TacAacT11B.1.6090.000479
ORF880T80EACaGAa11B.1.617.20.000004
ORF880T80AAcaGca11B.1.6210.000089
ORF880T80delACA---11B.1.6210.000089
ORF880T80EACaGAa11B.1.6370.000073
ORF880T80IaCaaTa11B.300.014706
ORF880T80delACA---11B.340.013699
ORF880T80delACA---11C.260.007353
ORF880T80IaCaaTa11C.360.000911
ORF880T80delACA---11C.360.000911
ORF880T80IaCaaTa11C.370.000116
ORF880T80delACA---11C.370.000116
ORF880T80delACA---11M.30.076923
ORF880T80delACA---11N.60.007092
ORF880T80IaCaaTa11P.10.000016
ORF880T80delACA---11P.1.120.000484
ORF880T80delACA---11P.1.80.004785
ORF880T80TacAacG11P.20.000187
ORF880T80SAcATcG11Q.10.000126
ORF880T80EACaGAa11Q.30.000145
ORF880T80delACA---11Q.80.000165
ORF880T80delACA---11R.10.00009