CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 80

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF8	80	T80T		syn	acA	acT	9025	8983	0.995346	28131-28133
ORF8	80	T80T		syn	acA	acG	9025	40	0.00443213	28131-28133
ORF8	80	T80T		syn	acA	acC	9025	2	0.000221607	28131-28133
ORF8	80	T80E		nonsyn	ACa	GAa	1971	1971	1	28131-28133
ORF8	80	T80I		nonsyn	aCa	aTa	1298	1296	0.998459	28131-28133
ORF8	80	T80I		nonsyn	aCA	aTT	1298	2	0.00154083	28131-28133
ORF8	80	T80del		del	ACA	---	703	703	1	28131-28133
ORF8	80	T80del1		del	AcA	Tc-	59	30	0.508475	28131-28133
ORF8	80	T80del1		del	ACa	-Ta	59	22	0.372881	28131-28133
ORF8	80	T80del1		del	acA	ac-	59	3	0.0508475	28131-28133
ORF8	80	T80del1		del	Aca	-ca	59	3	0.0508475	28131-28133
ORF8	80	T80del1		del	ACA	-NN	59	1	0.0169492	28131-28133
ORF8	80	T80K		nonsyn	aCa	aAa	30	30	1	28131-28133
ORF8	80	T80A		nonsyn	Aca	Gca	26	26	1	28131-28133
ORF8	80	T80D		nonsyn	ACA	GAC	16	16	1	28131-28133
ORF8	80	T80S		nonsyn	Aca	Tca	15	14	0.933333	28131-28133
ORF8	80	T80S		nonsyn	AcA	TcG	15	1	0.0666667	28131-28133
ORF8	80	T80V		nonsyn	ACa	GTa	5	5	1	28131-28133
ORF8	80	T80del2		del	ACa	--a	5	4	0.8	28131-28133
ORF8	80	T80del2		del	aCA	a--	5	1	0.2	28131-28133
ORF8	80	T80L		nonsyn	ACa	TTa	4	4	1	28131-28133
ORF8	80	T80M		nonsyn	aCA	aTG	2	2	1	28131-28133
ORF8	80	T80X		nonsyn	ACA	TAG	2	2	1	28131-28133
ORF8	80	T80F		nonsyn	ACA	TTT	1	1	1	28131-28133
ORF8	80	T80P		nonsyn	Aca	Cca	1	1	1	28131-28133
ORF8	80	T80R		nonsyn	aCa	aGa	1	1	1	28131-28133

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF8	80	T80T	acA	acT	8983	9025	All	0.001718
ORF8	80	T80T	acA	acG	40	9025	All	0.000008
ORF8	80	T80T	acA	acC	2	9025	All	0
ORF8	80	T80T	acA	acT	6683	6684	B.1.221	0.474712
ORF8	80	T80T	acA	acG	1	6684	B.1.221	0.000071
ORF8	80	T80E	ACa	GAa	1971	1971	All	0.000377
ORF8	80	T80E	ACa	GAa	1922	1922	B.1.1.7	0.001721
ORF8	80	T80I	aCa	aTa	1296	1298	All	0.000248
ORF8	80	T80I	aCA	aTT	2	1298	All	0
ORF8	80	T80T	acA	acT	1196	1196	B.1.221.3	0.996667
ORF8	80	T80del	ACA	---	703	703	All	0.000134
ORF8	80	T80T	acA	acT	631	631	B.1.524	0.887482
ORF8	80	T80I	aCa	aTa	474	474	B.1.1.7	0.000424
ORF8	80	T80I	aCa	aTa	264	264	AY.4	0.000411
ORF8	80	T80T	acA	acT	247	247	B.1.221.2	0.991968
ORF8	80	T80del	ACA	---	139	139	B.1.1.7	0.000124
ORF8	80	T80I	aCa	aTa	121	121	B.1.2	0.001065
ORF8	80	T80I	aCa	aTa	117	117	B.1.429	0.002753
ORF8	80	T80T	acA	acT	101	104	B.1	0.000925
ORF8	80	T80T	acA	acG	2	104	B.1	0.000018
ORF8	80	T80T	acA	acC	1	104	B.1	0.000009
ORF8	80	T80I	aCa	aTa	76	77	AY.3	0.000756
ORF8	80	T80I	aCA	aTT	1	77	AY.3	0.00001
ORF8	80	T80del	ACA	---	60	60	AY.4	0.000093
ORF8	80	T80del1	AcA	Tc-	30	59	All	0.000006
ORF8	80	T80del1	ACa	-Ta	22	59	All	0.000004
ORF8	80	T80del1	Aca	-ca	3	59	All	0.000001
ORF8	80	T80del1	acA	ac-	3	59	All	0.000001
ORF8	80	T80del1	ACA	-NN	1	59	All	0
ORF8	80	T80del	ACA	---	58	58	B.1.1.294	0.073418
ORF8	80	T80del	ACA	---	45	45	B.1.351	0.001338
ORF8	80	T80I	aCa	aTa	43	43	B.1.36.18	0.018067
ORF8	80	T80I	aCa	aTa	40	40	AY.43	0.000177
ORF8	80	T80del	ACA	---	37	37	AY.29	0.000584
ORF8	80	T80del	ACA	---	34	34	B.1.1	0.000617
ORF8	80	T80del	ACA	---	34	34	B.1.243	0.002366
ORF8	80	T80del1	AcA	Tc-	27	33	AY.4	0.000042
ORF8	80	T80del1	ACa	-Ta	6	33	AY.4	0.000009
ORF8	80	T80del	ACA	---	33	33	B.1.1.222	0.006732
ORF8	80	T80K	aCa	aAa	30	30	All	0.000006
ORF8	80	T80del	ACA	---	28	28	AY.103	0.000174
ORF8	80	T80I	aCa	aTa	28	28	B.1.526	0.000658
ORF8	80	T80A	Aca	Gca	26	26	All	0.000005
ORF8	80	T80K	aCa	aAa	23	23	B.1.1.7	0.000021
ORF8	80	T80I	aCa	aTa	23	23	B.1.617.2	0.000087
ORF8	80	T80del	ACA	---	18	18	B	0.002301
ORF8	80	T80A	Aca	Gca	17	17	B.1.1.7	0.000015
ORF8	80	T80del	ACA	---	17	17	P.1	0.000268
ORF8	80	T80D	ACA	GAC	16	16	All	0.000003
ORF8	80	T80D	ACA	GAC	16	16	B.1.1.7	0.000014
ORF8	80	T80S	Aca	Tca	14	15	All	0.000003
ORF8	80	T80S	AcA	TcG	1	15	All	0
ORF8	80	T80T	acA	acT	14	14	B.1.177	0.000184
ORF8	80	T80T	acA	acT	14	14	B.6.6	0.012444
ORF8	80	T80T	acA	acG	12	12	AY.103	0.000075
ORF8	80	T80I	aCa	aTa	11	11	AY.25	0.000066
ORF8	80	T80del	ACA	---	11	11	B.1.1.318	0.003319
ORF8	80	T80T	acA	acG	6	11	B.1.1.7	0.000005
ORF8	80	T80T	acA	acT	5	11	B.1.1.7	0.000004
ORF8	80	T80del	ACA	---	11	11	B.1.160	0.000343
ORF8	80	T80T	acA	acG	6	10	AY.4	0.000009
ORF8	80	T80T	acA	acT	3	10	AY.4	0.000005
ORF8	80	T80T	acA	acC	1	10	AY.4	0.000002
ORF8	80	T80del	ACA	---	10	10	AY.43	0.000044
ORF8	80	T80del1	ACa	-Ta	10	10	B.1.1	0.000181
ORF8	80	T80del	ACA	---	9	9	B.1.1.284	0.000967
ORF8	80	T80T	acA	acT	9	9	B.1.210	0.01919
ORF8	80	T80del	ACA	---	7	7	AY.3	0.00007
ORF8	80	T80I	aCa	aTa	7	7	AY.39	0.000173
ORF8	80	T80E	ACa	GAa	7	7	AY.4	0.000011
ORF8	80	T80I	aCa	aTa	7	7	B.1	0.000064
ORF8	80	T80del	ACA	---	7	7	B.1.1.265	0.022082
ORF8	80	T80I	aCa	aTa	7	7	B.1.1.519	0.000278
ORF8	80	T80T	acA	acT	7	7	B.1.160.32	0.030043
ORF8	80	T80T	acA	acT	6	7	B.1.2	0.000053
ORF8	80	T80T	acA	acG	1	7	B.1.2	0.000009
ORF8	80	T80T	acA	acT	7	7	B.1.36.1	0.007982
ORF8	80	T80del	ACA	---	7	7	B.1.36.16	0.009972
ORF8	80	T80E	ACa	GAa	7	7	B.1.429	0.000165
ORF8	80	T80del	ACA	---	7	7	B.1.617.2	0.000026
ORF8	80	T80del	ACA	---	6	6	AY.119	0.000212
ORF8	80	T80del	ACA	---	6	6	B.1.177	0.000079
ORF8	80	T80del	ACA	---	6	6	P.1.14	0.000287
ORF8	80	T80V	ACa	GTa	5	5	All	0.000001
ORF8	80	T80del2	ACa	--a	4	5	All	0.000001
ORF8	80	T80del2	aCA	a--	1	5	All	0
ORF8	80	T80del	ACA	---	5	5	AY.118	0.000313
ORF8	80	T80del	ACA	---	5	5	AY.29.1	0.001103
ORF8	80	T80I	aCa	aTa	5	5	AY.44	0.00003
ORF8	80	T80E	ACa	GAa	5	5	B.1.1	0.000091
ORF8	80	T80T	acA	acT	5	5	B.1.1	0.000091
ORF8	80	T80del	ACA	---	5	5	B.1.1.519	0.000199
ORF8	80	T80V	ACa	GTa	5	5	B.1.1.7	0.000004
ORF8	80	T80T	acA	acT	5	5	B.1.160	0.000156
ORF8	80	T80T	acA	acT	5	5	B.1.177.73	0.002831
ORF8	80	T80S	Aca	Tca	5	5	B.1.617.2	0.000019
ORF8	80	T80del1	ACa	-Ta	5	5	P.1	0.000079
ORF8	80	T80del	ACA	---	5	5	P.1.1	0.001588
ORF8	80	T80L	ACa	TTa	4	4	All	0.000001
ORF8	80	T80del	ACA	---	4	4	AY.102	0.000106
ORF8	80	T80del	ACA	---	4	4	AY.25	0.000024
ORF8	80	T80T	acA	acT	4	4	AY.9.1	0.000335
ORF8	80	T80I	aCa	aTa	4	4	AY.9.1	0.000335
ORF8	80	T80T	acA	acT	4	4	B	0.000511
ORF8	80	T80del	ACA	---	4	4	B.1.1.214	0.000222
ORF8	80	T80E	ACa	GAa	4	4	B.1.177	0.000053
ORF8	80	T80T	acA	acT	4	4	B.1.177.40	0.020619
ORF8	80	T80del	ACA	---	4	4	B.1.2	0.000035
ORF8	80	T80T	acA	acG	3	3	A.2.5.3	0.030928
ORF8	80	T80del	ACA	---	3	3	AY.26	0.000085
ORF8	80	T80I	aCa	aTa	3	3	AY.35	0.000699
ORF8	80	T80A	Aca	Gca	3	3	AY.44	0.000018
ORF8	80	T80del	ACA	---	3	3	AY.44	0.000018
ORF8	80	T80A	Aca	Gca	3	3	B.1	0.000027
ORF8	80	T80K	aCa	aAa	3	3	B.1	0.000027
ORF8	80	T80I	aCa	aTa	3	3	B.1.1.157	0.00274
ORF8	80	T80I	aCa	aTa	3	3	B.1.177	0.00004
ORF8	80	T80del	ACA	---	3	3	B.1.22	0.003953
ORF8	80	T80I	aCa	aTa	3	3	B.1.258	0.0002
ORF8	80	T80T	acA	acT	3	3	B.1.336	0.007317
ORF8	80	T80del	ACA	---	3	3	B.1.429	0.000071
ORF8	80	T80del	ACA	---	3	3	B.1.438.1	0.000322
ORF8	80	T80del	ACA	---	3	3	B.1.509	0.002597
ORF8	80	T80I	aCa	aTa	2	2	A.23.1	0.001408
ORF8	80	T80M	aCA	aTG	2	2	All	0
ORF8	80	T80X	ACA	TAG	2	2	All	0
ORF8	80	T80I	aCa	aTa	2	2	AY.103	0.000012
ORF8	80	T80E	ACa	GAa	2	2	AY.103	0.000012
ORF8	80	T80I	aCa	aTa	2	2	AY.26	0.000057
ORF8	80	T80del	ACA	---	2	2	AY.34	0.000194
ORF8	80	T80del1	AcA	Tc-	2	2	AY.37	0.000632
ORF8	80	T80S	Aca	Tca	2	2	AY.39	0.000049
ORF8	80	T80del	ACA	---	2	2	AY.39.1	0.000079
ORF8	80	T80K	aCa	aAa	2	2	AY.43	0.000009
ORF8	80	T80S	Aca	Tca	2	2	AY.44	0.000012
ORF8	80	T80T	acA	acG	1	2	AY.44	0.000006
ORF8	80	T80T	acA	acT	1	2	AY.44	0.000006
ORF8	80	T80del	ACA	---	2	2	AY.48	0.00093
ORF8	80	T80I	aCa	aTa	2	2	AY.5	0.000041
ORF8	80	T80K	aCa	aAa	2	2	AY.98.1	0.000097
ORF8	80	T80I	aCa	aTa	2	2	AY.98.1	0.000097
ORF8	80	T80del	ACA	---	2	2	B.1	0.000018
ORF8	80	T80E	ACa	GAa	2	2	B.1	0.000018
ORF8	80	T80T	acA	acT	2	2	B.1.1.161	0.007067
ORF8	80	T80T	acA	acT	2	2	B.1.1.294	0.002532
ORF8	80	T80I	aCa	aTa	2	2	B.1.1.318	0.000604
ORF8	80	T80M	aCA	aTG	2	2	B.1.1.7	0.000002
ORF8	80	T80del1	acA	ac-	1	2	B.1.1.7	0.000001
ORF8	80	T80del1	Aca	-ca	1	2	B.1.1.7	0.000001
ORF8	80	T80T	acA	acT	2	2	B.1.177.86	0.000367
ORF8	80	T80E	ACa	GAa	2	2	B.1.2	0.000018
ORF8	80	T80E	ACa	GAa	2	2	B.1.258.17	0.000208
ORF8	80	T80del	ACA	---	2	2	B.1.36	0.000292
ORF8	80	T80del	ACA	---	2	2	B.1.427	0.000101
ORF8	80	T80del2	ACa	--a	2	2	B.1.429	0.000047
ORF8	80	T80T	acA	acG	1	2	B.1.617.2	0.000004
ORF8	80	T80T	acA	acT	1	2	B.1.617.2	0.000004
ORF8	80	T80E	ACa	GAa	2	2	B.1.621	0.000177
ORF8	80	T80del	ACA	---	2	2	B.40	0.000729
ORF8	80	T80I	aCa	aTa	2	2	D.2	0.00015
ORF8	80	T80E	ACa	GAa	2	2	P.1	0.000032
ORF8	80	T80I	aCa	aTa	2	2	P.1.14	0.000096
ORF8	80	T80del	ACA	---	2	2	P.1.15	0.000465
ORF8	80	T80E	ACa	GAa	2	2	Q.1	0.000253
ORF8	80	T80E	ACa	GAa	2	2	Q.8	0.00033
ORF8	80	T80I	aCa	aTa	2	2	Q.8	0.00033
ORF8	80	T80T	acA	acG	1	1	A	0.000387
ORF8	80	T80T	acA	acG	1	1	A.2.5	0.000499
ORF8	80	T80I	aCa	aTa	1	1	A.2.5.1	0.004808
ORF8	80	T80del	ACA	---	1	1	AE.4	0.043478
ORF8	80	T80F	ACA	TTT	1	1	All	0
ORF8	80	T80P	Aca	Cca	1	1	All	0
ORF8	80	T80R	aCa	aGa	1	1	All	0
ORF8	80	T80A	Aca	Gca	1	1	AY.100	0.000046
ORF8	80	T80I	aCa	aTa	1	1	AY.102	0.000027
ORF8	80	T80S	Aca	Tca	1	1	AY.103	0.000006
ORF8	80	T80del	ACA	---	1	1	AY.108	0.001103
ORF8	80	T80del	ACA	---	1	1	AY.116.1	0.000311
ORF8	80	T80del1	Aca	-ca	1	1	AY.118	0.000063
ORF8	80	T80I	aCa	aTa	1	1	AY.118	0.000063
ORF8	80	T80I	aCa	aTa	1	1	AY.119	0.000035
ORF8	80	T80I	aCa	aTa	1	1	AY.120	0.000037
ORF8	80	T80I	aCa	aTa	1	1	AY.14	0.000088
ORF8	80	T80I	aCa	aTa	1	1	AY.2	0.000356
ORF8	80	T80I	aCa	aTa	1	1	AY.20	0.000039
ORF8	80	T80I	aCa	aTa	1	1	AY.23	0.00007
ORF8	80	T80X	ACA	TAG	1	1	AY.26	0.000028
ORF8	80	T80I	aCa	aTa	1	1	AY.29	0.000016
ORF8	80	T80del2	ACa	--a	1	1	AY.29	0.000016
ORF8	80	T80E	ACa	GAa	1	1	AY.3	0.00001
ORF8	80	T80L	ACa	TTa	1	1	AY.3	0.00001
ORF8	80	T80F	ACA	TTT	1	1	AY.3	0.00001
ORF8	80	T80I	aCa	aTa	1	1	AY.34	0.000097
ORF8	80	T80del1	AcA	Tc-	1	1	AY.39	0.000025
ORF8	80	T80del	ACA	---	1	1	AY.39	0.000025
ORF8	80	T80I	aCa	aTa	1	1	AY.39.1	0.00004
ORF8	80	T80S	Aca	Tca	1	1	AY.4	0.000002
ORF8	80	T80X	ACA	TAG	1	1	AY.4	0.000002
ORF8	80	T80del	ACA	---	1	1	AY.4.2	0.000022
ORF8	80	T80I	aCa	aTa	1	1	AY.42	0.00004
ORF8	80	T80del1	acA	ac-	1	1	AY.44	0.000006
ORF8	80	T80I	aCa	aTa	1	1	AY.46	0.000104
ORF8	80	T80I	aCa	aTa	1	1	AY.46.4	0.000165
ORF8	80	T80I	aCa	aTa	1	1	AY.46.5	0.000198
ORF8	80	T80I	aCa	aTa	1	1	AY.46.6	0.000072
ORF8	80	T80del1	acA	ac-	1	1	AY.47	0.000031
ORF8	80	T80I	aCa	aTa	1	1	AY.54	0.000095
ORF8	80	T80del	ACA	---	1	1	AY.58	0.000907
ORF8	80	T80del1	ACA	-NN	1	1	AY.67	0.000464
ORF8	80	T80del	ACA	---	1	1	AY.69	0.000187
ORF8	80	T80I	aCa	aTa	1	1	AY.70	0.000209
ORF8	80	T80del	ACA	---	1	1	AY.74	0.000116
ORF8	80	T80I	aCa	aTa	1	1	AY.79	0.001211
ORF8	80	T80I	aCa	aTa	1	1	AY.84	0.000437
ORF8	80	T80del	ACA	---	1	1	AY.84	0.000437
ORF8	80	T80I	aCa	aTa	1	1	AY.88	0.000884
ORF8	80	T80E	ACa	GAa	1	1	AY.9.2	0.000037
ORF8	80	T80I	aCa	aTa	1	1	AY.98	0.000079
ORF8	80	T80S	Aca	Tca	1	1	B	0.000128
ORF8	80	T80T	acA	acT	1	1	B.1.1.162	0.029412
ORF8	80	T80del	ACA	---	1	1	B.1.1.174	0.003378
ORF8	80	T80E	ACa	GAa	1	1	B.1.1.214	0.000055
ORF8	80	T80del	ACA	---	1	1	B.1.1.216	0.00089
ORF8	80	T80I	aCa	aTa	1	1	B.1.1.216	0.00089
ORF8	80	T80T	acA	acG	1	1	B.1.1.222	0.000204
ORF8	80	T80del	ACA	---	1	1	B.1.1.236	0.006897
ORF8	80	T80del	ACA	---	1	1	B.1.1.25	0.000569
ORF8	80	T80I	aCa	aTa	1	1	B.1.1.25	0.000569
ORF8	80	T80T	acA	acT	1	1	B.1.1.267	0.010101
ORF8	80	T80del	ACA	---	1	1	B.1.1.28	0.000311
ORF8	80	T80del	ACA	---	1	1	B.1.1.322	0.008772
ORF8	80	T80del	ACA	---	1	1	B.1.1.37	0.000193
ORF8	80	T80T	acA	acT	1	1	B.1.1.462	0.008621
ORF8	80	T80del	ACA	---	1	1	B.1.1.506	0.037037
ORF8	80	T80T	acA	acT	1	1	B.1.1.54	0.003021
ORF8	80	T80del	ACA	---	1	1	B.1.1.63	0.000386
ORF8	80	T80L	ACa	TTa	1	1	B.1.1.7	0.000001
ORF8	80	T80R	aCa	aGa	1	1	B.1.1.7	0.000001
ORF8	80	T80del2	aCA	a--	1	1	B.1.1.7	0.000001
ORF8	80	T80S	Aca	Tca	1	1	B.1.1.7	0.000001
ORF8	80	T80T	acA	acT	1	1	B.1.1.83	0.00271
ORF8	80	T80T	acA	acT	1	1	B.1.116	0.011628
ORF8	80	T80del	ACA	---	1	1	B.1.126	0.001276
ORF8	80	T80T	acA	acT	1	1	B.1.139	0.000733
ORF8	80	T80I	aCa	aTa	1	1	B.1.149	0.003425
ORF8	80	T80T	acA	acT	1	1	B.1.157	0.002985
ORF8	80	T80E	ACa	GAa	1	1	B.1.160	0.000031
ORF8	80	T80I	aCa	aTa	1	1	B.1.160	0.000031
ORF8	80	T80I	aCa	aTa	1	1	B.1.160.14	0.002119
ORF8	80	T80del	ACA	---	1	1	B.1.177.12	0.000152
ORF8	80	T80I	aCa	aTa	1	1	B.1.177.21	0.000076
ORF8	80	T80L	ACa	TTa	1	1	B.1.177.44	0.000519
ORF8	80	T80del1	Aca	-ca	1	1	B.1.177.63	0.002703
ORF8	80	T80del	ACA	---	1	1	B.1.177.7	0.000165
ORF8	80	T80T	acA	acT	1	1	B.1.177.75	0.001041
ORF8	80	T80E	ACa	GAa	1	1	B.1.177.81	0.000189
ORF8	80	T80T	acA	acT	1	1	B.1.177.81	0.000189
ORF8	80	T80del	ACA	---	1	1	B.1.177.83	0.001481
ORF8	80	T80P	Aca	Cca	1	1	B.1.177.83	0.001481
ORF8	80	T80del	ACA	---	1	1	B.1.195	0.005025
ORF8	80	T80del1	ACa	-Ta	1	1	B.1.2	0.000009
ORF8	80	T80del	ACA	---	1	1	B.1.210	0.002132
ORF8	80	T80I	aCA	aTT	1	1	B.1.221	0.000071
ORF8	80	T80I	aCa	aTa	1	1	B.1.240	0.000216
ORF8	80	T80T	acA	acG	1	1	B.1.243	0.00007
ORF8	80	T80S	Aca	Tca	1	1	B.1.258	0.000067
ORF8	80	T80T	acA	acT	1	1	B.1.258	0.000067
ORF8	80	T80del	ACA	---	1	1	B.1.258.12	0.007874
ORF8	80	T80T	acA	acG	1	1	B.1.258.14	0.00098
ORF8	80	T80T	acA	acT	1	1	B.1.258.17	0.000104
ORF8	80	T80del	ACA	---	1	1	B.1.258.17	0.000104
ORF8	80	T80T	acA	acT	1	1	B.1.258.20	0.015873
ORF8	80	T80T	acA	acT	1	1	B.1.260	0.003344
ORF8	80	T80T	acA	acT	1	1	B.1.311	0.000275
ORF8	80	T80I	aCa	aTa	1	1	B.1.328	0.03125
ORF8	80	T80I	aCa	aTa	1	1	B.1.340	0.004292
ORF8	80	T80del	ACA	---	1	1	B.1.351.2	0.000303
ORF8	80	T80E	ACa	GAa	1	1	B.1.351.3	0.000876
ORF8	80	T80T	acA	acT	1	1	B.1.36.10	0.004785
ORF8	80	T80T	acA	acG	1	1	B.1.36.38	0.001642
ORF8	80	T80T	acA	acT	1	1	B.1.362	0.001541
ORF8	80	T80I	aCa	aTa	1	1	B.1.427	0.00005
ORF8	80	T80L	ACa	TTa	1	1	B.1.429	0.000024
ORF8	80	T80I	aCa	aTa	1	1	B.1.466.2	0.000391
ORF8	80	T80del	ACA	---	1	1	B.1.468	0.005714
ORF8	80	T80T	acA	acT	1	1	B.1.473	0.019231
ORF8	80	T80del	ACA	---	1	1	B.1.526	0.000024
ORF8	80	T80del	ACA	---	1	1	B.1.540	0.009709
ORF8	80	T80del2	ACa	--a	1	1	B.1.549	0.007194
ORF8	80	T80T	acA	acT	1	1	B.1.560	0.00463
ORF8	80	T80A	Aca	Gca	1	1	B.1.596	0.000087
ORF8	80	T80E	ACa	GAa	1	1	B.1.596	0.000087
ORF8	80	T80T	acA	acT	1	1	B.1.596	0.000087
ORF8	80	T80del	ACA	---	1	1	B.1.596	0.000087
ORF8	80	T80I	aCa	aTa	1	1	B.1.596	0.000087
ORF8	80	T80del	ACA	---	1	1	B.1.597	0.00463
ORF8	80	T80T	acA	acT	1	1	B.1.606	0.006024
ORF8	80	T80T	acA	acT	1	1	B.1.609	0.000479
ORF8	80	T80E	ACa	GAa	1	1	B.1.617.2	0.000004
ORF8	80	T80A	Aca	Gca	1	1	B.1.621	0.000089
ORF8	80	T80del	ACA	---	1	1	B.1.621	0.000089
ORF8	80	T80E	ACa	GAa	1	1	B.1.637	0.000073
ORF8	80	T80I	aCa	aTa	1	1	B.30	0.014706
ORF8	80	T80del	ACA	---	1	1	B.34	0.013699
ORF8	80	T80del	ACA	---	1	1	C.26	0.007353
ORF8	80	T80I	aCa	aTa	1	1	C.36	0.000911
ORF8	80	T80del	ACA	---	1	1	C.36	0.000911
ORF8	80	T80I	aCa	aTa	1	1	C.37	0.000116
ORF8	80	T80del	ACA	---	1	1	C.37	0.000116
ORF8	80	T80del	ACA	---	1	1	M.3	0.076923
ORF8	80	T80del	ACA	---	1	1	N.6	0.007092
ORF8	80	T80I	aCa	aTa	1	1	P.1	0.000016
ORF8	80	T80del	ACA	---	1	1	P.1.12	0.000484
ORF8	80	T80del	ACA	---	1	1	P.1.8	0.004785
ORF8	80	T80T	acA	acG	1	1	P.2	0.000187
ORF8	80	T80S	AcA	TcG	1	1	Q.1	0.000126
ORF8	80	T80E	ACa	GAa	1	1	Q.3	0.000145
ORF8	80	T80del	ACA	---	1	1	Q.8	0.000165
ORF8	80	T80del	ACA	---	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.