CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 73 & Codon = tGc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF873Y73CnonsyntActGc114148511413060.99984328110-28112

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF873Y73CtActGc11413061141485All0.218288
ORF873Y73CtActGc11091511109330B.1.1.70.992938
ORF873Y73CtActGc78637863Q.10.993305
ORF873Y73CtActGc68896889Q.30.99913
ORF873Y73CtActGc60306030Q.80.994393
ORF873Y73CtActGc29762976B.1.10.053987
ORF873Y73CtActGc21962196Q.40.998636
ORF873Y73CtActGc16251625Q.20.996933
ORF873Y73CtActGc13711371B.10.012558
ORF873Y73CtActGc896896Q.70.995556
ORF873Y73CtActGc211211B.1.177.730.119479
ORF873Y73CtActGc151151Q.61
ORF873Y73CtActGc149149B.1.3750.122131
ORF873Y73CtActGc133133AY.1030.000826
ORF873Y73CtActGc119119B.1.5760.107888
ORF873Y73CtActGc9898B0.012526
ORF873Y73CtActGc9292B.1.1770.001211
ORF873Y73CtActGc9090P.1.10.02859
ORF873Y73CtActGc6969P.10.001087
ORF873Y73CtActGc5959Q.51
ORF873Y73CtActGc5252B.1.20.000458
ORF873Y73CtActGc4545XA1
ORF873Y73CtActGc4242B.1.1.2050.156134
ORF873Y73CtActGc4242B.1.1.4090.11898
ORF873Y73CtActGc3939B.1.617.20.000147
ORF873Y73CtActGc3737B.1.177.70.0061
ORF873Y73CtActGc3333AY.440.000201
ORF873Y73CtActGc3131B.1.2210.002202
ORF873Y73CtActGc3131B.1.3510.000922
ORF873Y73CtActGc3131B.1.5260.000729
ORF873Y73CtActGc2828AY.40.000044
ORF873Y73CtActGc2424B.1.5960.002091
ORF873Y73CtActGc2222B.1.1600.000686
ORF873Y73CtActGc2222B.1.4290.000518
ORF873Y73CtActGc2121B.1.1.1610.074205
ORF873Y73CtActGc2121B.1.1.5070.182609
ORF873Y73CtActGc2121B.1.2580.001397
ORF873Y73CtActGc2020AY.430.000089
ORF873Y73CtActGc1818B.1.2430.001253
ORF873Y73CtActGc1616B.1.1.5190.000635
ORF873Y73CtActGc1616B.1.6090.00767
ORF873Y73CtActGc1414B.1.6200.013245
ORF873Y73CtActGc1313AY.260.000368
ORF873Y73CtActGc1313B.1.258.170.001352
ORF873Y73CtActGc12120.666667
ORF873Y73CtActGc1212B.1.1.2200.022305
ORF873Y73CtActGc1212B.1.1.2220.002448
ORF873Y73CtActGc1111B.1.617.10.001419
ORF873Y73CtActGc1010B.1.1.3120.01912
ORF873Y73CtActGc1010B.1.1.5280.048077
ORF873Y73CtActGc1010B.1.177.860.001835
ORF873Y73CtActGc99B.1.6230.004828
ORF873Y73CtActGc99P.1.150.002091
ORF873Y73CtActGc88B.1.1.390.004077
ORF873Y73CtActGc88B.1.4270.000404
ORF873Y73CtActGc88C.36.30.004538
ORF873Y73CtActGc88P.1.120.003872
ORF873Y73CtActGc77AY.290.00011
ORF873Y73CtActGc77B.1.1.3180.002112
ORF873Y73CtActGc77B.1.1390.005132
ORF873Y73CtActGc77B.1.4110.025926
ORF873Y73CtActGc77P.1.170.001132
ORF873Y73CtActGc66AY.250.000036
ORF873Y73CtActGc66B.1.1.2940.007595
ORF873Y73CtActGc66B.1.1.700.002046
ORF873Y73CtActGc66B.1.3110.001647
ORF873Y73CtActGc66B.1.6250.014118
ORF873Y73CtActGc66B.1.6280.002114
ORF873Y73CtActGc66B.1.6370.000438
ORF873Y73CtActGc55A0.001935
ORF873Y73CtActGc55A.2.50.002495
ORF873Y73CtActGc55AY.1020.000133
ORF873Y73CtActGc55AY.9.20.000184
ORF873Y73CtActGc55B.1.1.280.001556
ORF873Y73CtActGc55B.1.258.140.004902
ORF873Y73CtActGc55B.1.5250.000566
ORF873Y73CtActGc55B.1.6210.000443
ORF873Y73CtActGc55P.1.160.001871
ORF873Y73CtActGc44B.1.1.2650.012618
ORF873Y73CtActGc44B.1.1.500.002716
ORF873Y73CtActGc44B.1.3670.00317
ORF873Y73CtActGc44B.1.5950.001044
ORF873Y73CtActGc44C.370.000464
ORF873Y73CtActGc33A.2.5.20.004717
ORF873Y73CtActGc33AY.1130.000427
ORF873Y73CtActGc33AY.1180.000188
ORF873Y73CtActGc33AY.230.000209
ORF873Y73CtActGc33AY.300.001187
ORF873Y73CtActGc33AY.460.000312
ORF873Y73CtActGc33AZ.20.002463
ORF873Y73CtActGc33B.1.1.100.003344
ORF873Y73CtActGc33B.1.1.3170.001235
ORF873Y73CtActGc33B.1.1.5240.0625
ORF873Y73CtActGc33B.1.1.5250.016393
ORF873Y73CtActGc33B.1.1570.008955
ORF873Y73CtActGc33B.1.214.20.001799
ORF873Y73CtActGc33B.1.2370.014925
ORF873Y73CtActGc33B.1.4620.021739
ORF873Y73CtActGc33B.1.5170.001281
ORF873Y73CtActGc33B.1.5330.028846
ORF873Y73CtActGc33B.1.5990.010949
ORF873Y73CtActGc22AY.200.000078
ORF873Y73CtActGc22AY.420.00008
ORF873Y73CtActGc22AY.520.001629
ORF873Y73CtActGc22AY.610.00021
ORF873Y73CtActGc22AY.680.000547
ORF873Y73CtActGc22AY.920.000575
ORF873Y73CtActGc22B.1.1.1410.004024
ORF873Y73CtActGc22B.1.1.2910.001485
ORF873Y73CtActGc22B.1.1.2990.02439
ORF873Y73CtActGc22B.1.1.3700.025316
ORF873Y73CtActGc22B.1.1.4130.013793
ORF873Y73CtActGc22B.1.1.5230.003125
ORF873Y73CtActGc22B.1.1.990.047619
ORF873Y73CtActGc22B.1.1260.002551
ORF873Y73CtActGc22B.1.1490.006849
ORF873Y73CtActGc22B.1.177.210.000153
ORF873Y73CtActGc22B.1.177.310.022989
ORF873Y73CtActGc22B.1.177.830.002963
ORF873Y73CtActGc22B.1.3240.00321
ORF873Y73CtActGc22B.1.36.100.009569
ORF873Y73CtActGc22B.1.466.20.000782
ORF873Y73CtActGc22B.1.4970.00063
ORF873Y73CtActGc22B.1.5750.000607
ORF873Y73CtActGc22B.1.5800.00813
ORF873Y73CtActGc22B.1.6190.001742
ORF873Y73CtActGc22B.1.6270.00404
ORF873Y73CtActGc22B.1.6330.083333
ORF873Y73CtActGc22B.1.780.017094
ORF873Y73CtActGc22B.1.940.054054
ORF873Y73CtActGc22B.60.00182
ORF873Y73CtActGc22P.1.100.000539
ORF873Y73CtActGc22P.1.130.001797
ORF873Y73CtActGc22R.10.00018
ORF873Y73CtActGc11A.23.10.000704
ORF873Y73CtActGc11A.70.055556
ORF873Y73CtActGc11AY.10.000396
ORF873Y73CtActGc11AY.1000.000046
ORF873Y73CtActGc11AY.1100.000113
ORF873Y73CtActGc11AY.1160.000287
ORF873Y73CtActGc11AY.16.10.00047
ORF873Y73CtActGc11AY.210.001898
ORF873Y73CtActGc11AY.30.00001
ORF873Y73CtActGc11AY.340.000097
ORF873Y73CtActGc11AY.39.10.00004
ORF873Y73CtActGc11AY.4.2.10.000149
ORF873Y73CtActGc11AY.50.000021
ORF873Y73CtActGc11AY.540.000095
ORF873Y73CtActGc11AY.590.00053
ORF873Y73CtActGc11AY.650.000533
ORF873Y73CtActGc11AY.670.000464
ORF873Y73CtActGc11AY.70.000196
ORF873Y73CtActGc11AY.75.10.00018
ORF873Y73CtActGc11AY.90.000068
ORF873Y73CtActGc11AY.950.000761
ORF873Y73CtActGc11B.1.1.1350.004695
ORF873Y73CtActGc11B.1.1.1710.003676
ORF873Y73CtActGc11B.1.1.2160.00089
ORF873Y73CtActGc11B.1.1.2310.003096
ORF873Y73CtActGc11B.1.1.2360.006897
ORF873Y73CtActGc11B.1.1.2370.005405
ORF873Y73CtActGc11B.1.1.250.000569
ORF873Y73CtActGc11B.1.1.2540.011236
ORF873Y73CtActGc11B.1.1.2690.001353
ORF873Y73CtActGc11B.1.1.2770.000759
ORF873Y73CtActGc11B.1.1.2800.003086
ORF873Y73CtActGc11B.1.1.3010.001179
ORF873Y73CtActGc11B.1.1.3060.000438
ORF873Y73CtActGc11B.1.1.3150.008475
ORF873Y73CtActGc11B.1.1.3280.016949
ORF873Y73CtActGc11B.1.1.340.013158
ORF873Y73CtActGc11B.1.1.3400.045455
ORF873Y73CtActGc11B.1.1.3650.005587
ORF873Y73CtActGc11B.1.1.3740.002375
ORF873Y73CtActGc11B.1.1.3890.006061
ORF873Y73CtActGc11B.1.1.4200.001006
ORF873Y73CtActGc11B.1.1.440.00241
ORF873Y73CtActGc11B.1.1.4400.011765
ORF873Y73CtActGc11B.1.1.4480.002033
ORF873Y73CtActGc11B.1.1.5260.003546
ORF873Y73CtActGc11B.1.1.550.012987
ORF873Y73CtActGc11B.1.160.140.002119
ORF873Y73CtActGc11B.1.160.80.001289
ORF873Y73CtActGc11B.1.1700.00431
ORF873Y73CtActGc11B.1.177.350.000691
ORF873Y73CtActGc11B.1.177.40.000211
ORF873Y73CtActGc11B.1.177.460.000918
ORF873Y73CtActGc11B.1.177.510.004566
ORF873Y73CtActGc11B.1.177.520.001757
ORF873Y73CtActGc11B.1.177.60.000977
ORF873Y73CtActGc11B.1.177.670.007634
ORF873Y73CtActGc11B.1.177.760.002494
ORF873Y73CtActGc11B.1.177.810.000189
ORF873Y73CtActGc11B.1.177.840.006667
ORF873Y73CtActGc11B.1.1990.004132
ORF873Y73CtActGc11B.1.2060.000816
ORF873Y73CtActGc11B.1.2140.003663
ORF873Y73CtActGc11B.1.2340.000132
ORF873Y73CtActGc11B.1.2410.000812
ORF873Y73CtActGc11B.1.2600.003344
ORF873Y73CtActGc11B.1.3010.005917
ORF873Y73CtActGc11B.1.3320.003497
ORF873Y73CtActGc11B.1.351.50.0006
ORF873Y73CtActGc11B.1.36.10.00114
ORF873Y73CtActGc11B.1.36.20.010753
ORF873Y73CtActGc11B.1.36.70.004
ORF873Y73CtActGc11B.1.3690.000285
ORF873Y73CtActGc11B.1.3930.028571
ORF873Y73CtActGc11B.1.3970.004854
ORF873Y73CtActGc11B.1.3990.001934
ORF873Y73CtActGc11B.1.415.10.007576
ORF873Y73CtActGc11B.1.4320.011236
ORF873Y73CtActGc11B.1.4330.003195
ORF873Y73CtActGc11B.1.4560.003268
ORF873Y73CtActGc11B.1.5240.001406
ORF873Y73CtActGc11B.1.5300.007143
ORF873Y73CtActGc11B.1.5600.00463
ORF873Y73CtActGc11B.1.5640.000426
ORF873Y73CtActGc11B.1.5650.00081
ORF873Y73CtActGc11B.1.5680.001111
ORF873Y73CtActGc11B.1.5770.000687
ORF873Y73CtActGc11B.1.5900.004545
ORF873Y73CtActGc11B.1.6060.006024
ORF873Y73CtActGc11B.1.6340.003425
ORF873Y73CtActGc11B.1.6360.006711
ORF873Y73CtActGc11B.1.6380.052632
ORF873Y73CtActGc11C.360.000911
ORF873Y73CtActGc11P.1.10.10.00813
ORF873Y73CtActGc11P.1.140.000048
ORF873Y73CtActGc11P.1.70.000319
ORF873Y73CtActGc11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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