CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 69 & Codon = Cca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF869S69PnonsynTcaCca16661666128098-28100

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF869S69PTcaCca16661666All0.000319
ORF869S69PTcaCca377377B.1.1.70.000337
ORF869S69PTcaCca178178AY.40.000277
ORF869S69PTcaCca9191AY.250.000547
ORF869S69PTcaCca9191AY.390.002249
ORF869S69PTcaCca5353B.1.617.20.0002
ORF869S69PTcaCca5252B.1.4650.197719
ORF869S69PTcaCca5151AY.30.000507
ORF869S69PTcaCca4545B.1.5300.321429
ORF869S69PTcaCca4242B.1.2340.005542
ORF869S69PTcaCca3636B.10.00033
ORF869S69PTcaCca3434B.1.1.2140.001886
ORF869S69PTcaCca3434B.1.5750.010316
ORF869S69PTcaCca3333AY.430.000146
ORF869S69PTcaCca3131B.1.177.370.837838
ORF869S69PTcaCca3030P.10.000473
ORF869S69PTcaCca2828AY.440.00017
ORF869S69PTcaCca2525B.1.1.5190.000993
ORF869S69PTcaCca2424P.1.140.001147
ORF869S69PTcaCca2323B.1.10.000417
ORF869S69PTcaCca2020B.1.20.000176
ORF869S69PTcaCca1919B.1.3510.000565
ORF869S69PTcaCca1515AY.120.10.004815
ORF869S69PTcaCca1515B.1.5260.000353
ORF869S69PTcaCca1414AY.1000.000644
ORF869S69PTcaCca1212AY.1030.000075
ORF869S69PTcaCca1212AY.200.000466
ORF869S69PTcaCca1212AY.60.000494
ORF869S69PTcaCca1212B.1.1.5000.24
ORF869S69PTcaCca1212B.1.6210.001062
ORF869S69PTcaCca1111B.1.1770.000145
ORF869S69PTcaCca1010B.1.466.20.003912
ORF869S69PTcaCca99AY.1090.006657
ORF869S69PTcaCca99AY.420.000362
ORF869S69PTcaCca99B.1.1.3060.003946
ORF869S69PTcaCca99B.1.36.210.019438
ORF869S69PTcaCca99B.1.4290.000212
ORF869S69PTcaCca88AY.9.10.00067
ORF869S69PTcaCca77B.1.1.2220.001428
ORF869S69PTcaCca77B.1.1600.000218
ORF869S69PTcaCca77B.1.2430.000487
ORF869S69PTcaCca66AY.4.20.00013
ORF869S69PTcaCca55AY.330.000334
ORF869S69PTcaCca55B.1.2580.000333
ORF869S69PTcaCca55P.1.10.001588
ORF869S69PTcaCca44AY.1170.000338
ORF869S69PTcaCca44AY.610.000419
ORF869S69PTcaCca44B.1.1.1010.04
ORF869S69PTcaCca44B.1.1.2540.044944
ORF869S69PTcaCca33AY.1020.00008
ORF869S69PTcaCca33AY.1190.000106
ORF869S69PTcaCca33AY.230.000209
ORF869S69PTcaCca33AY.50.000062
ORF869S69PTcaCca33AY.540.000286
ORF869S69PTcaCca33AY.9.20.00011
ORF869S69PTcaCca33AY.910.002191
ORF869S69PTcaCca33AY.98.10.000145
ORF869S69PTcaCca33B.1.177.440.001557
ORF869S69PTcaCca33B.1.177.860.00055
ORF869S69PTcaCca22AY.1110.000366
ORF869S69PTcaCca22AY.130.000322
ORF869S69PTcaCca22AY.160.000759
ORF869S69PTcaCca22AY.280.003781
ORF869S69PTcaCca22AY.39.1.10.001449
ORF869S69PTcaCca22AY.550.001835
ORF869S69PTcaCca22AY.90.000135
ORF869S69PTcaCca22B.1.1.2370.010811
ORF869S69PTcaCca22B.1.1.2410.004141
ORF869S69PTcaCca22B.1.1260.002551
ORF869S69PTcaCca22B.1.177.100.001756
ORF869S69PTcaCca22B.1.36.290.001035
ORF869S69PTcaCca11A0.000387
ORF869S69PTcaCca11A.10.000282
ORF869S69PTcaCca11AA.40.009091
ORF869S69PTcaCca11AU.10.001266
ORF869S69PTcaCca11AU.20.002421
ORF869S69PTcaCca11AY.1070.000466
ORF869S69PTcaCca11AY.1080.001103
ORF869S69PTcaCca11AY.1130.000142
ORF869S69PTcaCca11AY.1200.000037
ORF869S69PTcaCca11AY.140.000088
ORF869S69PTcaCca11AY.260.000028
ORF869S69PTcaCca11AY.290.000016
ORF869S69PTcaCca11AY.4.50.000107
ORF869S69PTcaCca11AY.450.000122
ORF869S69PTcaCca11AY.5.40.000277
ORF869S69PTcaCca11AY.70.000196
ORF869S69PTcaCca11AY.75.10.00018
ORF869S69PTcaCca11B0.000128
ORF869S69PTcaCca11B.1.1.2190.005
ORF869S69PTcaCca11B.1.1.2390.032258
ORF869S69PTcaCca11B.1.1.250.000569
ORF869S69PTcaCca11B.1.1.280.000311
ORF869S69PTcaCca11B.1.1.2840.000107
ORF869S69PTcaCca11B.1.1.3120.001912
ORF869S69PTcaCca11B.1.1.3480.000796
ORF869S69PTcaCca11B.1.1.370.000193
ORF869S69PTcaCca11B.1.1.4860.001577
ORF869S69PTcaCca11B.1.1.500.000679
ORF869S69PTcaCca11B.1.1.5260.003546
ORF869S69PTcaCca11B.1.160.160.000929
ORF869S69PTcaCca11B.1.160.260.002421
ORF869S69PTcaCca11B.1.1700.00431
ORF869S69PTcaCca11B.1.177.150.000631
ORF869S69PTcaCca11B.1.177.430.001477
ORF869S69PTcaCca11B.1.2210.000071
ORF869S69PTcaCca11B.1.258.220.002667
ORF869S69PTcaCca11B.1.258.30.001675
ORF869S69PTcaCca11B.1.351.30.000876
ORF869S69PTcaCca11B.1.36.120.009615
ORF869S69PTcaCca11B.1.416.10.001563
ORF869S69PTcaCca11B.1.4270.00005
ORF869S69PTcaCca11B.1.5170.000427
ORF869S69PTcaCca11B.1.5250.000113
ORF869S69PTcaCca11B.1.5950.000261
ORF869S69PTcaCca11B.1.5960.000087
ORF869S69PTcaCca11B.1.6090.000479
ORF869S69PTcaCca11B.1.617.10.000129
ORF869S69PTcaCca11B.1.6280.000352
ORF869S69PTcaCca11B.1.9.50.005682
ORF869S69PTcaCca11B.230.002924
ORF869S69PTcaCca11B.290.003509
ORF869S69PTcaCca11B.380.02381
ORF869S69PTcaCca11C.370.000116
ORF869S69PTcaCca11P.1.100.000269
ORF869S69PTcaCca11P.20.000187
ORF869S69PTcaCca11Q.10.000126
ORF869S69PTcaCca11Q.30.000145
ORF869S69PTcaCca11Q.80.000165
ORF869S69PTcaCca11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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