CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 69 | S69P | nonsyn | Tca | Cca | 1666 | 1666 | 1 | 28098-28100 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 69 | S69P | Tca | Cca | 1666 | 1666 | All | 0.000319 |
ORF8 | 69 | S69P | Tca | Cca | 377 | 377 | B.1.1.7 | 0.000337 |
ORF8 | 69 | S69P | Tca | Cca | 178 | 178 | AY.4 | 0.000277 |
ORF8 | 69 | S69P | Tca | Cca | 91 | 91 | AY.25 | 0.000547 |
ORF8 | 69 | S69P | Tca | Cca | 91 | 91 | AY.39 | 0.002249 |
ORF8 | 69 | S69P | Tca | Cca | 53 | 53 | B.1.617.2 | 0.0002 |
ORF8 | 69 | S69P | Tca | Cca | 52 | 52 | B.1.465 | 0.197719 |
ORF8 | 69 | S69P | Tca | Cca | 51 | 51 | AY.3 | 0.000507 |
ORF8 | 69 | S69P | Tca | Cca | 45 | 45 | B.1.530 | 0.321429 |
ORF8 | 69 | S69P | Tca | Cca | 42 | 42 | B.1.234 | 0.005542 |
ORF8 | 69 | S69P | Tca | Cca | 36 | 36 | B.1 | 0.00033 |
ORF8 | 69 | S69P | Tca | Cca | 34 | 34 | B.1.1.214 | 0.001886 |
ORF8 | 69 | S69P | Tca | Cca | 34 | 34 | B.1.575 | 0.010316 |
ORF8 | 69 | S69P | Tca | Cca | 33 | 33 | AY.43 | 0.000146 |
ORF8 | 69 | S69P | Tca | Cca | 31 | 31 | B.1.177.37 | 0.837838 |
ORF8 | 69 | S69P | Tca | Cca | 30 | 30 | P.1 | 0.000473 |
ORF8 | 69 | S69P | Tca | Cca | 28 | 28 | AY.44 | 0.00017 |
ORF8 | 69 | S69P | Tca | Cca | 25 | 25 | B.1.1.519 | 0.000993 |
ORF8 | 69 | S69P | Tca | Cca | 24 | 24 | P.1.14 | 0.001147 |
ORF8 | 69 | S69P | Tca | Cca | 23 | 23 | B.1.1 | 0.000417 |
ORF8 | 69 | S69P | Tca | Cca | 20 | 20 | B.1.2 | 0.000176 |
ORF8 | 69 | S69P | Tca | Cca | 19 | 19 | B.1.351 | 0.000565 |
ORF8 | 69 | S69P | Tca | Cca | 15 | 15 | AY.120.1 | 0.004815 |
ORF8 | 69 | S69P | Tca | Cca | 15 | 15 | B.1.526 | 0.000353 |
ORF8 | 69 | S69P | Tca | Cca | 14 | 14 | AY.100 | 0.000644 |
ORF8 | 69 | S69P | Tca | Cca | 12 | 12 | AY.103 | 0.000075 |
ORF8 | 69 | S69P | Tca | Cca | 12 | 12 | AY.20 | 0.000466 |
ORF8 | 69 | S69P | Tca | Cca | 12 | 12 | AY.6 | 0.000494 |
ORF8 | 69 | S69P | Tca | Cca | 12 | 12 | B.1.1.500 | 0.24 |
ORF8 | 69 | S69P | Tca | Cca | 12 | 12 | B.1.621 | 0.001062 |
ORF8 | 69 | S69P | Tca | Cca | 11 | 11 | B.1.177 | 0.000145 |
ORF8 | 69 | S69P | Tca | Cca | 10 | 10 | B.1.466.2 | 0.003912 |
ORF8 | 69 | S69P | Tca | Cca | 9 | 9 | AY.109 | 0.006657 |
ORF8 | 69 | S69P | Tca | Cca | 9 | 9 | AY.42 | 0.000362 |
ORF8 | 69 | S69P | Tca | Cca | 9 | 9 | B.1.1.306 | 0.003946 |
ORF8 | 69 | S69P | Tca | Cca | 9 | 9 | B.1.36.21 | 0.019438 |
ORF8 | 69 | S69P | Tca | Cca | 9 | 9 | B.1.429 | 0.000212 |
ORF8 | 69 | S69P | Tca | Cca | 8 | 8 | AY.9.1 | 0.00067 |
ORF8 | 69 | S69P | Tca | Cca | 7 | 7 | B.1.1.222 | 0.001428 |
ORF8 | 69 | S69P | Tca | Cca | 7 | 7 | B.1.160 | 0.000218 |
ORF8 | 69 | S69P | Tca | Cca | 7 | 7 | B.1.243 | 0.000487 |
ORF8 | 69 | S69P | Tca | Cca | 6 | 6 | AY.4.2 | 0.00013 |
ORF8 | 69 | S69P | Tca | Cca | 5 | 5 | AY.33 | 0.000334 |
ORF8 | 69 | S69P | Tca | Cca | 5 | 5 | B.1.258 | 0.000333 |
ORF8 | 69 | S69P | Tca | Cca | 5 | 5 | P.1.1 | 0.001588 |
ORF8 | 69 | S69P | Tca | Cca | 4 | 4 | AY.117 | 0.000338 |
ORF8 | 69 | S69P | Tca | Cca | 4 | 4 | AY.61 | 0.000419 |
ORF8 | 69 | S69P | Tca | Cca | 4 | 4 | B.1.1.101 | 0.04 |
ORF8 | 69 | S69P | Tca | Cca | 4 | 4 | B.1.1.254 | 0.044944 |
ORF8 | 69 | S69P | Tca | Cca | 3 | 3 | AY.102 | 0.00008 |
ORF8 | 69 | S69P | Tca | Cca | 3 | 3 | AY.119 | 0.000106 |
ORF8 | 69 | S69P | Tca | Cca | 3 | 3 | AY.23 | 0.000209 |
ORF8 | 69 | S69P | Tca | Cca | 3 | 3 | AY.5 | 0.000062 |
ORF8 | 69 | S69P | Tca | Cca | 3 | 3 | AY.54 | 0.000286 |
ORF8 | 69 | S69P | Tca | Cca | 3 | 3 | AY.9.2 | 0.00011 |
ORF8 | 69 | S69P | Tca | Cca | 3 | 3 | AY.91 | 0.002191 |
ORF8 | 69 | S69P | Tca | Cca | 3 | 3 | AY.98.1 | 0.000145 |
ORF8 | 69 | S69P | Tca | Cca | 3 | 3 | B.1.177.44 | 0.001557 |
ORF8 | 69 | S69P | Tca | Cca | 3 | 3 | B.1.177.86 | 0.00055 |
ORF8 | 69 | S69P | Tca | Cca | 2 | 2 | AY.111 | 0.000366 |
ORF8 | 69 | S69P | Tca | Cca | 2 | 2 | AY.13 | 0.000322 |
ORF8 | 69 | S69P | Tca | Cca | 2 | 2 | AY.16 | 0.000759 |
ORF8 | 69 | S69P | Tca | Cca | 2 | 2 | AY.28 | 0.003781 |
ORF8 | 69 | S69P | Tca | Cca | 2 | 2 | AY.39.1.1 | 0.001449 |
ORF8 | 69 | S69P | Tca | Cca | 2 | 2 | AY.55 | 0.001835 |
ORF8 | 69 | S69P | Tca | Cca | 2 | 2 | AY.9 | 0.000135 |
ORF8 | 69 | S69P | Tca | Cca | 2 | 2 | B.1.1.237 | 0.010811 |
ORF8 | 69 | S69P | Tca | Cca | 2 | 2 | B.1.1.241 | 0.004141 |
ORF8 | 69 | S69P | Tca | Cca | 2 | 2 | B.1.126 | 0.002551 |
ORF8 | 69 | S69P | Tca | Cca | 2 | 2 | B.1.177.10 | 0.001756 |
ORF8 | 69 | S69P | Tca | Cca | 2 | 2 | B.1.36.29 | 0.001035 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | A | 0.000387 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | A.1 | 0.000282 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AA.4 | 0.009091 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AU.1 | 0.001266 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AU.2 | 0.002421 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AY.107 | 0.000466 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AY.108 | 0.001103 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AY.113 | 0.000142 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AY.120 | 0.000037 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AY.14 | 0.000088 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AY.26 | 0.000028 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AY.29 | 0.000016 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AY.4.5 | 0.000107 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AY.45 | 0.000122 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AY.5.4 | 0.000277 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AY.7 | 0.000196 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | AY.75.1 | 0.00018 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B | 0.000128 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.1.219 | 0.005 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.1.239 | 0.032258 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.1.25 | 0.000569 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.1.28 | 0.000311 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.1.284 | 0.000107 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.1.312 | 0.001912 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.1.348 | 0.000796 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.1.37 | 0.000193 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.1.486 | 0.001577 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.1.50 | 0.000679 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.1.526 | 0.003546 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.160.16 | 0.000929 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.160.26 | 0.002421 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.170 | 0.00431 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.177.15 | 0.000631 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.177.43 | 0.001477 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.221 | 0.000071 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.258.22 | 0.002667 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.258.3 | 0.001675 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.351.3 | 0.000876 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.36.12 | 0.009615 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.416.1 | 0.001563 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.427 | 0.00005 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.517 | 0.000427 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.525 | 0.000113 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.595 | 0.000261 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.609 | 0.000479 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.628 | 0.000352 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.1.9.5 | 0.005682 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.23 | 0.002924 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.29 | 0.003509 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | B.38 | 0.02381 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | C.37 | 0.000116 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | P.1.10 | 0.000269 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | P.2 | 0.000187 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | Q.1 | 0.000126 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | Q.3 | 0.000145 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | Q.8 | 0.000165 |
ORF8 | 69 | S69P | Tca | Cca | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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