CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 69 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF8	69	S69del		del	TCA	---	1010	1010	1	28098-28100

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF8	69	S69del	TCA	---	1010	1010	All	0.000193
ORF8	69	S69del	TCA	---	270	270	B.1.1.7	0.000242
ORF8	69	S69del	TCA	---	72	72	AY.4	0.000112
ORF8	69	S69del	TCA	---	58	58	B.1.1.294	0.073418
ORF8	69	S69del	TCA	---	45	45	B.1.351	0.001338
ORF8	69	S69del	TCA	---	38	38	AY.29	0.000599
ORF8	69	S69del	TCA	---	38	38	B.1.160	0.001185
ORF8	69	S69del	TCA	---	35	35	B.1.1	0.000635
ORF8	69	S69del	TCA	---	34	34	B.1.1.222	0.006936
ORF8	69	S69del	TCA	---	33	33	B.1.243	0.002296
ORF8	69	S69del	TCA	---	31	31	AY.44	0.000189
ORF8	69	S69del	TCA	---	22	22	P.1	0.000347
ORF8	69	S69del	TCA	---	18	18	AY.3	0.000179
ORF8	69	S69del	TCA	---	18	18	B	0.002301
ORF8	69	S69del	TCA	---	16	16	AY.103	0.000099
ORF8	69	S69del	TCA	---	14	14	B.1.2	0.000123
ORF8	69	S69del	TCA	---	12	12	AY.118	0.000752
ORF8	69	S69del	TCA	---	12	12	B.1.617.2	0.000045
ORF8	69	S69del	TCA	---	11	11	B.1.1.318	0.003319
ORF8	69	S69del	TCA	---	10	10	AY.43	0.000044
ORF8	69	S69del	TCA	---	8	8	B.1.1.284	0.000859
ORF8	69	S69del	TCA	---	8	8	B.1.177	0.000105
ORF8	69	S69del	TCA	---	7	7	AY.119	0.000247
ORF8	69	S69del	TCA	---	7	7	AY.98.1	0.000339
ORF8	69	S69del	TCA	---	7	7	B.1.1.265	0.022082
ORF8	69	S69del	TCA	---	7	7	B.1.36.16	0.009972
ORF8	69	S69del	TCA	---	7	7	B.1.628	0.002467
ORF8	69	S69del	TCA	---	6	6	AY.102	0.000159
ORF8	69	S69del	TCA	---	6	6	AY.26	0.00017
ORF8	69	S69del	TCA	---	6	6	AY.59	0.003178
ORF8	69	S69del	TCA	---	6	6	B.1.1.519	0.000238
ORF8	69	S69del	TCA	---	6	6	B.1.243.2	0.086957
ORF8	69	S69del	TCA	---	6	6	B.1.429	0.000141
ORF8	69	S69del	TCA	---	6	6	P.1.14	0.000287
ORF8	69	S69del	TCA	---	6	6	P.1.17	0.000971
ORF8	69	S69del	TCA	---	5	5	AY.25	0.00003
ORF8	69	S69del	TCA	---	5	5	AY.29.1	0.001103
ORF8	69	S69del	TCA	---	5	5	B.1.1.214	0.000277
ORF8	69	S69del	TCA	---	5	5	B.1.240	0.001078
ORF8	69	S69del	TCA	---	5	5	C.37	0.00058
ORF8	69	S69del	TCA	---	5	5	P.1.1	0.001588
ORF8	69	S69del	TCA	---	4	4	AY.39	0.000099
ORF8	69	S69del	TCA	---	4	4	AY.4.2	0.000087
ORF8	69	S69del	TCA	---	3	3	AY.113	0.000427
ORF8	69	S69del	TCA	---	3	3	B.1	0.000027
ORF8	69	S69del	TCA	---	3	3	B.1.22	0.003953
ORF8	69	S69del	TCA	---	3	3	B.1.438.1	0.000322
ORF8	69	S69del	TCA	---	3	3	B.1.509	0.002597
ORF8	69	S69del	TCA	---	2	2	AY.35	0.000466
ORF8	69	S69del	TCA	---	2	2	AY.39.1	0.000079
ORF8	69	S69del	TCA	---	2	2	AY.47	0.000062
ORF8	69	S69del	TCA	---	2	2	AY.48	0.00093
ORF8	69	S69del	TCA	---	2	2	B.1.36	0.000292
ORF8	69	S69del	TCA	---	2	2	B.1.369	0.00057
ORF8	69	S69del	TCA	---	2	2	B.1.427	0.000101
ORF8	69	S69del	TCA	---	2	2	B.1.526	0.000047
ORF8	69	S69del	TCA	---	2	2	B.40	0.000729
ORF8	69	S69del	TCA	---	2	2	P.1.12	0.000968
ORF8	69	S69del	TCA	---	2	2	P.1.15	0.000465
ORF8	69	S69del	TCA	---	2	2	P.1.7	0.000639
ORF8	69	S69del	TCA	---	2	2	Q.8	0.00033
ORF8	69	S69del	TCA	---	1	1	AE.4	0.043478
ORF8	69	S69del	TCA	---	1	1	AY.108	0.001103
ORF8	69	S69del	TCA	---	1	1	AY.120.1	0.000321
ORF8	69	S69del	TCA	---	1	1	AY.20	0.000039
ORF8	69	S69del	TCA	---	1	1	AY.3.1	0.000085
ORF8	69	S69del	TCA	---	1	1	AY.34	0.000097
ORF8	69	S69del	TCA	---	1	1	AY.58	0.000907
ORF8	69	S69del	TCA	---	1	1	AY.69	0.000187
ORF8	69	S69del	TCA	---	1	1	AY.74	0.000116
ORF8	69	S69del	TCA	---	1	1	AY.84	0.000437
ORF8	69	S69del	TCA	---	1	1	AY.9	0.000068
ORF8	69	S69del	TCA	---	1	1	B.1.1.174	0.003378
ORF8	69	S69del	TCA	---	1	1	B.1.1.216	0.00089
ORF8	69	S69del	TCA	---	1	1	B.1.1.25	0.000569
ORF8	69	S69del	TCA	---	1	1	B.1.1.269	0.001353
ORF8	69	S69del	TCA	---	1	1	B.1.1.322	0.008772
ORF8	69	S69del	TCA	---	1	1	B.1.1.354	0.004386
ORF8	69	S69del	TCA	---	1	1	B.1.1.37	0.000193
ORF8	69	S69del	TCA	---	1	1	B.1.1.63	0.000386
ORF8	69	S69del	TCA	---	1	1	B.1.126	0.001276
ORF8	69	S69del	TCA	---	1	1	B.1.177.17	0.000821
ORF8	69	S69del	TCA	---	1	1	B.1.177.63	0.002703
ORF8	69	S69del	TCA	---	1	1	B.1.177.7	0.000165
ORF8	69	S69del	TCA	---	1	1	B.1.177.83	0.001481
ORF8	69	S69del	TCA	---	1	1	B.1.195	0.005025
ORF8	69	S69del	TCA	---	1	1	B.1.210	0.002132
ORF8	69	S69del	TCA	---	1	1	B.1.258.12	0.007874
ORF8	69	S69del	TCA	---	1	1	B.1.258.17	0.000104
ORF8	69	S69del	TCA	---	1	1	B.1.35	0.008475
ORF8	69	S69del	TCA	---	1	1	B.1.351.2	0.000303
ORF8	69	S69del	TCA	---	1	1	B.1.468	0.005714
ORF8	69	S69del	TCA	---	1	1	B.1.517	0.000427
ORF8	69	S69del	TCA	---	1	1	B.1.540	0.009709
ORF8	69	S69del	TCA	---	1	1	B.1.549	0.007194
ORF8	69	S69del	TCA	---	1	1	B.1.597	0.00463
ORF8	69	S69del	TCA	---	1	1	B.1.621	0.000089
ORF8	69	S69del	TCA	---	1	1	B.34	0.013699
ORF8	69	S69del	TCA	---	1	1	C.26	0.007353
ORF8	69	S69del	TCA	---	1	1	C.36	0.000911
ORF8	69	S69del	TCA	---	1	1	M.3	0.076923
ORF8	69	S69del	TCA	---	1	1	N.6	0.007092
ORF8	69	S69del	TCA	---	1	1	P.1.8	0.004785
ORF8	69	S69del	TCA	---	1	1	Q.3	0.000145
ORF8	69	S69del	TCA	---	1	1	Q.4	0.000455
ORF8	69	S69del	TCA	---	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.