CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 67 & Codon = ---

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF8	67	S67del		del	TCT	---	8885	8885	1	28092-28094

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF8	67	S67del	TCT	---	8885	8885	All	0.001699
ORF8	67	S67del	TCT	---	2852	2852	B.1.1.7	0.002553
ORF8	67	S67del	TCT	---	671	671	AY.4	0.001044
ORF8	67	S67del	TCT	---	385	385	B.1.617.2	0.00145
ORF8	67	S67del	TCT	---	347	347	AY.6	0.014272
ORF8	67	S67del	TCT	---	327	327	AY.44	0.00199
ORF8	67	S67del	TCT	---	248	248	B.1.1	0.004499
ORF8	67	S67del	TCT	---	222	222	AY.43	0.000984
ORF8	67	S67del	TCT	---	182	182	B.1.621.1	0.092059
ORF8	67	S67del	TCT	---	177	177	B.1.36.36	0.106562
ORF8	67	S67del	TCT	---	176	176	B.1.526	0.004137
ORF8	67	S67del	TCT	---	149	149	B.1.2	0.001312
ORF8	67	S67del	TCT	---	138	138	B.1.1.413	0.951724
ORF8	67	S67del	TCT	---	134	134	AY.25	0.000806
ORF8	67	S67del	TCT	---	130	130	AY.103	0.000807
ORF8	67	S67del	TCT	---	101	101	AY.26	0.002859
ORF8	67	S67del	TCT	---	97	97	B.1.429	0.002282
ORF8	67	S67del	TCT	---	97	97	Q.6	0.642384
ORF8	67	S67del	TCT	---	96	96	AY.3	0.000955
ORF8	67	S67del	TCT	---	80	80	B.1	0.000733
ORF8	67	S67del	TCT	---	78	78	P.1	0.001229
ORF8	67	S67del	TCT	---	70	70	B.1.621	0.006196
ORF8	67	S67del	TCT	---	66	66	AY.119	0.00233
ORF8	67	S67del	TCT	---	65	65	B.1.1.312	0.124283
ORF8	67	S67del	TCT	---	64	64	B.1.177	0.000843
ORF8	67	S67del	TCT	---	59	59	AY.69	0.011014
ORF8	67	S67del	TCT	---	59	59	B.1.1.294	0.074684
ORF8	67	S67del	TCT	---	52	52	B.1.351	0.001546
ORF8	67	S67del	TCT	---	50	50	AY.23	0.003487
ORF8	67	S67del	TCT	---	50	50	P.3	0.079745
ORF8	67	S67del	TCT	---	49	49	B.1.160	0.001528
ORF8	67	S67del	TCT	---	48	48	B.1.617.1	0.00619
ORF8	67	S67del	TCT	---	47	47	AY.102	0.001246
ORF8	67	S67del	TCT	---	47	47	AY.3.1	0.004007
ORF8	67	S67del	TCT	---	44	44	AY.29	0.000694
ORF8	67	S67del	TCT	---	44	44	C.36	0.040073
ORF8	67	S67del	TCT	---	42	42	B.1.243	0.002923
ORF8	67	S67del	TCT	---	41	41	AY.98.1	0.001986
ORF8	67	S67del	TCT	---	41	41	L.3	0.14539
ORF8	67	S67del	TCT	---	37	37	B.1.1.519	0.001469
ORF8	67	S67del	TCT	---	36	36	Q.8	0.005937
ORF8	67	S67del	TCT	---	34	34	B.1.1.222	0.006936
ORF8	67	S67del	TCT	---	27	27	B.1.1.214	0.001497
ORF8	67	S67del	TCT	---	27	27	B.1.311	0.007414
ORF8	67	S67del	TCT	---	24	24	AY.107	0.011184
ORF8	67	S67del	TCT	---	24	24	AY.120	0.000892
ORF8	67	S67del	TCT	---	24	24	B.1.1.318	0.007242
ORF8	67	S67del	TCT	---	22	22	AY.61	0.002305
ORF8	67	S67del	TCT	---	20	20	AY.118	0.001253
ORF8	67	S67del	TCT	---	20	20	AY.30	0.007915
ORF8	67	S67del	TCT	---	20	20	AY.75	0.00112
ORF8	67	S67del	TCT	---	20	20	B	0.002556
ORF8	67	S67del	TCT	---	18	18	AY.39	0.000445
ORF8	67	S67del	TCT	---	18	18	AY.47	0.00056
ORF8	67	S67del	TCT	---	17	17	B.1.438.1	0.001823
ORF8	67	S67del	TCT	---	17	17	B.1.470	0.023876
ORF8	67	S67del	TCT	---	16	16	B.1.595	0.004175
ORF8	67	S67del	TCT	---	16	16	C.37	0.001857
ORF8	67	S67del	TCT	---	15	15	AD.2	0.003284
ORF8	67	S67del	TCT	---	15	15	AY.100	0.00069
ORF8	67	S67del	TCT	---	15	15	AY.4.2	0.000325
ORF8	67	S67del	TCT	---	15	15	AY.5	0.00031
ORF8	67	S67del	TCT	---	15	15	B.1.177.15	0.009464
ORF8	67	S67del	TCT	---	14	14	B.1.351.5	0.008393
ORF8	67	S67del	TCT	---	13	13	B.1.36	0.001897
ORF8	67	S67del	TCT	---	12	12	AY.36	0.001779
ORF8	67	S67del	TCT	---	11	11	AY.117	0.00093
ORF8	67	S67del	TCT	---	11	11	B.1.1.348	0.008758
ORF8	67	S67del	TCT	---	11	11	Q.1	0.00139
ORF8	67	S67del	TCT	---	10	10	AY.105	0.006431
ORF8	67	S67del	TCT	---	10	10	AY.59	0.005297
ORF8	67	S67del	TCT	---	10	10	B.1.628	0.003524
ORF8	67	S67del	TCT	---	9	9	AY.116.1	0.002803
ORF8	67	S67del	TCT	---	9	9	AY.20	0.00035
ORF8	67	S67del	TCT	---	9	9	AY.40	0.008679
ORF8	67	S67del	TCT	---	9	9	AY.84	0.003937
ORF8	67	S67del	TCT	---	9	9	B.1.1.83	0.02439
ORF8	67	S67del	TCT	---	9	9	P.1.14	0.00043
ORF8	67	S67del	TCT	---	8	8	AY.113	0.001139
ORF8	67	S67del	TCT	---	8	8	AY.121	0.001083
ORF8	67	S67del	TCT	---	8	8	AY.48	0.003721
ORF8	67	S67del	TCT	---	8	8	AY.67	0.003714
ORF8	67	S67del	TCT	---	8	8	B.1.1.284	0.000859
ORF8	67	S67del	TCT	---	8	8	B.1.1.356	0.068376
ORF8	67	S67del	TCT	---	8	8	B.1.177.60	0.001747
ORF8	67	S67del	TCT	---	8	8	B.1.240	0.001725
ORF8	67	S67del	TCT	---	8	8	B.1.336	0.019512
ORF8	67	S67del	TCT	---	8	8	B.1.525	0.000905
ORF8	67	S67del	TCT	---	8	8	Q.3	0.00116
ORF8	67	S67del	TCT	---	8	8	R.1	0.00072
ORF8	67	S67del	TCT	---	7	7	AY.4.4	0.002864
ORF8	67	S67del	TCT	---	7	7	AY.42	0.000282
ORF8	67	S67del	TCT	---	7	7	AY.5.4	0.001937
ORF8	67	S67del	TCT	---	7	7	AY.65	0.003731
ORF8	67	S67del	TCT	---	7	7	B.1.1.10	0.007804
ORF8	67	S67del	TCT	---	7	7	B.1.1.265	0.022082
ORF8	67	S67del	TCT	---	7	7	B.1.1.28	0.002179
ORF8	67	S67del	TCT	---	7	7	B.1.258.9	0.035
ORF8	67	S67del	TCT	---	7	7	B.1.36.16	0.009972
ORF8	67	S67del	TCT	---	6	6	AY.33	0.000401
ORF8	67	S67del	TCT	---	6	6	AY.35	0.001398
ORF8	67	S67del	TCT	---	6	6	AY.9.1	0.000502
ORF8	67	S67del	TCT	---	6	6	AY.99.2	0.000553
ORF8	67	S67del	TCT	---	6	6	B.1.1.225	0.043165
ORF8	67	S67del	TCT	---	6	6	B.1.1.372	0.004132
ORF8	67	S67del	TCT	---	6	6	B.1.1.50	0.004073
ORF8	67	S67del	TCT	---	6	6	B.1.243.2	0.086957
ORF8	67	S67del	TCT	---	6	6	P.1.17	0.000971
ORF8	67	S67del	TCT	---	5	5	AY.29.1	0.001103
ORF8	67	S67del	TCT	---	5	5	AY.45	0.000608
ORF8	67	S67del	TCT	---	5	5	AY.46.6	0.000361
ORF8	67	S67del	TCT	---	5	5	AY.86	0.004149
ORF8	67	S67del	TCT	---	5	5	B.1.1.158	0.060976
ORF8	67	S67del	TCT	---	5	5	B.1.1.216	0.004452
ORF8	67	S67del	TCT	---	5	5	B.1.177.7	0.000824
ORF8	67	S67del	TCT	---	5	5	B.1.214.2	0.002998
ORF8	67	S67del	TCT	---	5	5	B.1.480	0.012438
ORF8	67	S67del	TCT	---	5	5	P.1.1	0.001588
ORF8	67	S67del	TCT	---	4	4	AY.10	0.00212
ORF8	67	S67del	TCT	---	4	4	AY.110	0.000451
ORF8	67	S67del	TCT	---	4	4	AY.13	0.000644
ORF8	67	S67del	TCT	---	4	4	AY.16	0.001519
ORF8	67	S67del	TCT	---	4	4	AY.46	0.000416
ORF8	67	S67del	TCT	---	4	4	AY.74	0.000463
ORF8	67	S67del	TCT	---	4	4	AY.75.1	0.000721
ORF8	67	S67del	TCT	---	4	4	B.1.1.70	0.001364
ORF8	67	S67del	TCT	---	4	4	B.1.177.42	0.003578
ORF8	67	S67del	TCT	---	4	4	B.1.177.45	0.001525
ORF8	67	S67del	TCT	---	4	4	B.1.258	0.000266
ORF8	67	S67del	TCT	---	4	4	B.1.258.17	0.000416
ORF8	67	S67del	TCT	---	4	4	B.1.36.1	0.004561
ORF8	67	S67del	TCT	---	4	4	B.1.396	0.002823
ORF8	67	S67del	TCT	---	4	4	B.1.427	0.000202
ORF8	67	S67del	TCT	---	4	4	B.1.466.2	0.001565
ORF8	67	S67del	TCT	---	4	4	B.1.637	0.000292
ORF8	67	S67del	TCT	---	4	4	N.5	0.007067
ORF8	67	S67del	TCT	---	3	3	AY.101	0.001471
ORF8	67	S67del	TCT	---	3	3	AY.34	0.000291
ORF8	67	S67del	TCT	---	3	3	AY.38	0.001498
ORF8	67	S67del	TCT	---	3	3	AY.4.5	0.000322
ORF8	67	S67del	TCT	---	3	3	AY.9.2	0.00011
ORF8	67	S67del	TCT	---	3	3	AY.93	0.000819
ORF8	67	S67del	TCT	---	3	3	AY.94	0.001328
ORF8	67	S67del	TCT	---	3	3	B.1.1.317	0.001235
ORF8	67	S67del	TCT	---	3	3	B.1.1.337	0.010791
ORF8	67	S67del	TCT	---	3	3	B.1.1.344	0.032258
ORF8	67	S67del	TCT	---	3	3	B.1.1.434	0.001046
ORF8	67	S67del	TCT	---	3	3	B.1.1.526	0.010638
ORF8	67	S67del	TCT	---	3	3	B.1.177.21	0.000229
ORF8	67	S67del	TCT	---	3	3	B.1.22	0.003953
ORF8	67	S67del	TCT	---	3	3	B.1.221	0.000213
ORF8	67	S67del	TCT	---	3	3	B.1.241	0.002435
ORF8	67	S67del	TCT	---	3	3	B.1.279	0.001541
ORF8	67	S67del	TCT	---	3	3	B.1.36.17	0.001482
ORF8	67	S67del	TCT	---	3	3	B.1.36.18	0.001261
ORF8	67	S67del	TCT	---	3	3	B.1.36.31	0.005254
ORF8	67	S67del	TCT	---	3	3	B.1.361	0.003866
ORF8	67	S67del	TCT	---	3	3	B.1.509	0.002597
ORF8	67	S67del	TCT	---	3	3	B.1.577	0.002062
ORF8	67	S67del	TCT	---	3	3	B.1.596	0.000261
ORF8	67	S67del	TCT	---	3	3	B.1.601	0.090909
ORF8	67	S67del	TCT	---	3	3	B.1.609	0.001438
ORF8	67	S67del	TCT	---	3	3	C.16	0.003181
ORF8	67	S67del	TCT	---	3	3	P.1.12	0.001452
ORF8	67	S67del	TCT	---	3	3	P.1.15	0.000697
ORF8	67	S67del	TCT	---	3	3	P.1.7	0.000958
ORF8	67	S67del	TCT	---	2	2	AP.1	0.003003
ORF8	67	S67del	TCT	---	2	2	AY.108	0.002205
ORF8	67	S67del	TCT	---	2	2	AY.109	0.001479
ORF8	67	S67del	TCT	---	2	2	AY.12	0.000632
ORF8	67	S67del	TCT	---	2	2	AY.24	0.000862
ORF8	67	S67del	TCT	---	2	2	AY.34.1	0.00102
ORF8	67	S67del	TCT	---	2	2	AY.39.1	0.000079
ORF8	67	S67del	TCT	---	2	2	AY.52	0.001629
ORF8	67	S67del	TCT	---	2	2	AY.58	0.001815
ORF8	67	S67del	TCT	---	2	2	AY.7	0.000392
ORF8	67	S67del	TCT	---	2	2	AY.9	0.000135
ORF8	67	S67del	TCT	---	2	2	AY.91	0.001461
ORF8	67	S67del	TCT	---	2	2	B.1.1.1	0.000653
ORF8	67	S67del	TCT	---	2	2	B.1.1.157	0.001826
ORF8	67	S67del	TCT	---	2	2	B.1.1.159	0.009346
ORF8	67	S67del	TCT	---	2	2	B.1.1.174	0.006757
ORF8	67	S67del	TCT	---	2	2	B.1.1.487	0.011173
ORF8	67	S67del	TCT	---	2	2	B.1.1.63	0.000772
ORF8	67	S67del	TCT	---	2	2	B.1.110.3	0.001437
ORF8	67	S67del	TCT	---	2	2	B.1.177.57	0.000562
ORF8	67	S67del	TCT	---	2	2	B.1.177.81	0.000379
ORF8	67	S67del	TCT	---	2	2	B.1.210	0.004264
ORF8	67	S67del	TCT	---	2	2	B.1.243.1	0.044444
ORF8	67	S67del	TCT	---	2	2	B.1.260	0.006689
ORF8	67	S67del	TCT	---	2	2	B.1.351.2	0.000605
ORF8	67	S67del	TCT	---	2	2	B.1.369	0.00057
ORF8	67	S67del	TCT	---	2	2	B.1.375	0.001639
ORF8	67	S67del	TCT	---	2	2	B.1.381	0.015625
ORF8	67	S67del	TCT	---	2	2	B.1.413	0.008511
ORF8	67	S67del	TCT	---	2	2	B.1.469	0.00722
ORF8	67	S67del	TCT	---	2	2	C.37.1	0.005236
ORF8	67	S67del	TCT	---	2	2	Q.4	0.00091
ORF8	67	S67del	TCT	---	2	2	Q.7	0.002222
ORF8	67	S67del	TCT	---	1	1	A.1	0.000282
ORF8	67	S67del	TCT	---	1	1	A.2	0.000662
ORF8	67	S67del	TCT	---	1	1	A.2.2	0.001689
ORF8	67	S67del	TCT	---	1	1	A.2.4	0.003367
ORF8	67	S67del	TCT	---	1	1	A.2.5	0.000499
ORF8	67	S67del	TCT	---	1	1	A.2.5.2	0.001572
ORF8	67	S67del	TCT	---	1	1	AE.4	0.043478
ORF8	67	S67del	TCT	---	1	1	AY.1	0.000396
ORF8	67	S67del	TCT	---	1	1	AY.116	0.000287
ORF8	67	S67del	TCT	---	1	1	AY.120.1	0.000321
ORF8	67	S67del	TCT	---	1	1	AY.14	0.000088
ORF8	67	S67del	TCT	---	1	1	AY.19	0.00114
ORF8	67	S67del	TCT	---	1	1	AY.2	0.000356
ORF8	67	S67del	TCT	---	1	1	AY.27	0.000065
ORF8	67	S67del	TCT	---	1	1	AY.37	0.000316
ORF8	67	S67del	TCT	---	1	1	AY.4.3	0.000842
ORF8	67	S67del	TCT	---	1	1	AY.46.4	0.000165
ORF8	67	S67del	TCT	---	1	1	AY.5.2	0.002463
ORF8	67	S67del	TCT	---	1	1	AY.54	0.000095
ORF8	67	S67del	TCT	---	1	1	AY.56	0.001605
ORF8	67	S67del	TCT	---	1	1	AY.68	0.000274
ORF8	67	S67del	TCT	---	1	1	AY.70	0.000209
ORF8	67	S67del	TCT	---	1	1	AY.71	0.000475
ORF8	67	S67del	TCT	---	1	1	AY.8	0.000606
ORF8	67	S67del	TCT	---	1	1	AY.89	0.004902
ORF8	67	S67del	TCT	---	1	1	AY.9.2.1	0.001976
ORF8	67	S67del	TCT	---	1	1	AY.92	0.000287
ORF8	67	S67del	TCT	---	1	1	B.1.1.161	0.003534
ORF8	67	S67del	TCT	---	1	1	B.1.1.171	0.003676
ORF8	67	S67del	TCT	---	1	1	B.1.1.176	0.000439
ORF8	67	S67del	TCT	---	1	1	B.1.1.198	0.001468
ORF8	67	S67del	TCT	---	1	1	B.1.1.220	0.001859
ORF8	67	S67del	TCT	---	1	1	B.1.1.231	0.003096
ORF8	67	S67del	TCT	---	1	1	B.1.1.25	0.000569
ORF8	67	S67del	TCT	---	1	1	B.1.1.269	0.001353
ORF8	67	S67del	TCT	---	1	1	B.1.1.274	0.005051
ORF8	67	S67del	TCT	---	1	1	B.1.1.306	0.000438
ORF8	67	S67del	TCT	---	1	1	B.1.1.322	0.008772
ORF8	67	S67del	TCT	---	1	1	B.1.1.326	0.001761
ORF8	67	S67del	TCT	---	1	1	B.1.1.354	0.004386
ORF8	67	S67del	TCT	---	1	1	B.1.1.37	0.000193
ORF8	67	S67del	TCT	---	1	1	B.1.1.398	0.003226
ORF8	67	S67del	TCT	---	1	1	B.1.1.416	0.000905
ORF8	67	S67del	TCT	---	1	1	B.1.1.422	0.045455
ORF8	67	S67del	TCT	---	1	1	B.1.1.437	0.010417
ORF8	67	S67del	TCT	---	1	1	B.1.1.507	0.008696
ORF8	67	S67del	TCT	---	1	1	B.1.1.51	0.001718
ORF8	67	S67del	TCT	---	1	1	B.1.1.52	0.012195
ORF8	67	S67del	TCT	---	1	1	B.1.1.89	0.006061
ORF8	67	S67del	TCT	---	1	1	B.1.1.99	0.02381
ORF8	67	S67del	TCT	---	1	1	B.1.115	0.021739
ORF8	67	S67del	TCT	---	1	1	B.1.126	0.001276
ORF8	67	S67del	TCT	---	1	1	B.1.139	0.000733
ORF8	67	S67del	TCT	---	1	1	B.1.146	0.004237
ORF8	67	S67del	TCT	---	1	1	B.1.177.10	0.000878
ORF8	67	S67del	TCT	---	1	1	B.1.177.17	0.000821
ORF8	67	S67del	TCT	---	1	1	B.1.177.4	0.000211
ORF8	67	S67del	TCT	---	1	1	B.1.177.53	0.002392
ORF8	67	S67del	TCT	---	1	1	B.1.177.63	0.002703
ORF8	67	S67del	TCT	---	1	1	B.1.177.83	0.001481
ORF8	67	S67del	TCT	---	1	1	B.1.177.86	0.000183
ORF8	67	S67del	TCT	---	1	1	B.1.192	0.009259
ORF8	67	S67del	TCT	---	1	1	B.1.195	0.005025
ORF8	67	S67del	TCT	---	1	1	B.1.237	0.004975
ORF8	67	S67del	TCT	---	1	1	B.1.239	0.001221
ORF8	67	S67del	TCT	---	1	1	B.1.258.12	0.007874
ORF8	67	S67del	TCT	---	1	1	B.1.281	0.021739
ORF8	67	S67del	TCT	---	1	1	B.1.337	0.005587
ORF8	67	S67del	TCT	---	1	1	B.1.349	0.000715
ORF8	67	S67del	TCT	---	1	1	B.1.35	0.008475
ORF8	67	S67del	TCT	---	1	1	B.1.36.25	0.002208
ORF8	67	S67del	TCT	---	1	1	B.1.36.7	0.004
ORF8	67	S67del	TCT	---	1	1	B.1.367	0.000792
ORF8	67	S67del	TCT	---	1	1	B.1.395	0.007042
ORF8	67	S67del	TCT	---	1	1	B.1.400	0.000429
ORF8	67	S67del	TCT	---	1	1	B.1.468	0.005714
ORF8	67	S67del	TCT	---	1	1	B.1.497	0.000315
ORF8	67	S67del	TCT	---	1	1	B.1.517	0.000427
ORF8	67	S67del	TCT	---	1	1	B.1.524	0.001406
ORF8	67	S67del	TCT	---	1	1	B.1.533	0.009615
ORF8	67	S67del	TCT	---	1	1	B.1.540	0.009709
ORF8	67	S67del	TCT	---	1	1	B.1.544	0.006024
ORF8	67	S67del	TCT	---	1	1	B.1.549	0.007194
ORF8	67	S67del	TCT	---	1	1	B.1.576	0.000907
ORF8	67	S67del	TCT	---	1	1	B.1.582	0.000491
ORF8	67	S67del	TCT	---	1	1	B.1.588	0.00091
ORF8	67	S67del	TCT	---	1	1	B.1.597	0.00463
ORF8	67	S67del	TCT	---	1	1	B.1.598	0.016949
ORF8	67	S67del	TCT	---	1	1	B.1.603	0.010638
ORF8	67	S67del	TCT	---	1	1	B.1.9.4	0.006135
ORF8	67	S67del	TCT	---	1	1	B.1.93	0.000934
ORF8	67	S67del	TCT	---	1	1	B.34	0.013699
ORF8	67	S67del	TCT	---	1	1	B.40	0.000364
ORF8	67	S67del	TCT	---	1	1	B.58	0.010204
ORF8	67	S67del	TCT	---	1	1	C.26	0.007353
ORF8	67	S67del	TCT	---	1	1	D.2	0.000075
ORF8	67	S67del	TCT	---	1	1	M.3	0.076923
ORF8	67	S67del	TCT	---	1	1	N.6	0.007092
ORF8	67	S67del	TCT	---	1	1	N.9	0.005952
ORF8	67	S67del	TCT	---	1	1	P.1.8	0.004785
ORF8	67	S67del	TCT	---	1	1	P.2	0.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.