CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 64 & Codon = Tag

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF864E64XnonsynGagTag1198611986128083-28085

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF864E64XGagTag1198611986All0.002292
ORF864E64XGagTag84158415B.1.258.170.874922
ORF864E64XGagTag560560B.1.1600.017465
ORF864E64XGagTag386386AY.200.015002
ORF864E64XGagTag270270B.1.1.70.000242
ORF864E64XGagTag226226B.1.1.740.974138
ORF864E64XGagTag183183S.10.905941
ORF864E64XGagTag181181AY.40.000282
ORF864E64XGagTag173173B.1.1770.002278
ORF864E64XGagTag140140B.1.1.5170.952381
ORF864E64XGagTag126126B.1.617.20.000474
ORF864E64XGagTag118118B.10.001081
ORF864E64XGagTag6262B.1.1.4200.062374
ORF864E64XGagTag5353AY.430.000235
ORF864E64XGagTag5050B.1.20.00044
ORF864E64XGagTag4949AY.30.000487
ORF864E64XGagTag4545B.1.177.40.009498
ORF864E64XGagTag4343B.1.36.80.043
ORF864E64XGagTag4141P.10.000646
ORF864E64XGagTag3939AY.440.000237
ORF864E64XGagTag3535AY.1030.000217
ORF864E64XGagTag3535AY.250.000211
ORF864E64XGagTag3434B.1.10.000617
ORF864E64XGagTag3030B.1.1.2220.00612
ORF864E64XGagTag3030B.1.4220.02437
ORF864E64XGagTag2828AY.60.001152
ORF864E64XGagTag2828B.1.6090.013423
ORF864E64XGagTag2525AY.420.001006
ORF864E64XGagTag2525B.1.1.250.014213
ORF864E64XGagTag2424B.1.2580.001597
ORF864E64XGagTag2121C.360.019126
ORF864E64XGagTag1919B.1.258.240.204301
ORF864E64XGagTag1818AY.330.001202
ORF864E64XGagTag1616B.1.1.2170.058182
ORF864E64XGagTag1616B.1.1.5190.000635
ORF864E64XGagTag1616B.1.177.860.002935
ORF864E64XGagTag1515AY.1000.00069
ORF864E64XGagTag1515AY.290.000237
ORF864E64XGagTag1515B.1.1.500.010183
ORF864E64XGagTag1414B.1.6210.001239
ORF864E64XGagTag1313AY.1020.000345
ORF864E64XGagTag1212B.1.1.4060.077922
ORF864E64XGagTag1212B.1.360.001751
ORF864E64XGagTag1111AY.50.000227
ORF864E64XGagTag1111P.20.002053
ORF864E64XGagTag1010AY.1010.004904
ORF864E64XGagTag1010B.1.258.40.034483
ORF864E64XGagTag88AY.230.000558
ORF864E64XGagTag88AY.390.000198
ORF864E64XGagTag88B.1.4080.02952
ORF864E64XGagTag88B.1.621.10.004047
ORF864E64XGagTag77B.1.1490.023973
ORF864E64XGagTag77B.1.2340.000924
ORF864E64XGagTag66AY.1110.001099
ORF864E64XGagTag66AY.1130.000854
ORF864E64XGagTag66AY.1140.001387
ORF864E64XGagTag66AY.260.00017
ORF864E64XGagTag66AY.360.000889
ORF864E64XGagTag66AY.4.20.00013
ORF864E64XGagTag66AY.9.20.00022
ORF864E64XGagTag66B0.000767
ORF864E64XGagTag55A.2.50.002495
ORF864E64XGagTag55AY.450.000608
ORF864E64XGagTag55B.1.1.5280.024038
ORF864E64XGagTag55B.1.5250.000566
ORF864E64XGagTag55B.1.5610.001985
ORF864E64XGagTag55B.4.10.09434
ORF864E64XGagTag44AY.590.002119
ORF864E64XGagTag44AY.7.10.000451
ORF864E64XGagTag44AY.99.20.000369
ORF864E64XGagTag44B.1.1.280.001245
ORF864E64XGagTag44B.1.1.3260.007042
ORF864E64XGagTag44B.1.177.100.003512
ORF864E64XGagTag44B.1.36.310.007005
ORF864E64XGagTag44B.1.3750.003279
ORF864E64XGagTag44B.1.4290.000094
ORF864E64XGagTag44C.370.000464
ORF864E64XGagTag33A.23.10.002113
ORF864E64XGagTag33AY.710.001425
ORF864E64XGagTag33AY.90.000203
ORF864E64XGagTag33AY.990.003148
ORF864E64XGagTag33B.1.1.370.000579
ORF864E64XGagTag33B.1.1.460.0131
ORF864E64XGagTag33B.1.5580.013699
ORF864E64XGagTag22AY.1160.000574
ORF864E64XGagTag22AY.1190.000071
ORF864E64XGagTag22AY.1200.000074
ORF864E64XGagTag22AY.4.2.10.000298
ORF864E64XGagTag22AY.540.000191
ORF864E64XGagTag22AY.610.00021
ORF864E64XGagTag22AY.750.000112
ORF864E64XGagTag22B.1.1.100.00223
ORF864E64XGagTag22B.1.1.1410.004024
ORF864E64XGagTag22B.1.1.2160.001781
ORF864E64XGagTag22B.1.1.2910.001485
ORF864E64XGagTag22B.1.1.3060.000877
ORF864E64XGagTag22B.1.1.3150.016949
ORF864E64XGagTag22B.1.1.3540.008772
ORF864E64XGagTag22B.1.1.700.000682
ORF864E64XGagTag22B.1.3620.003082
ORF864E64XGagTag22B.1.438.10.000215
ORF864E64XGagTag22B.1.5260.000047
ORF864E64XGagTag22B.400.000729
ORF864E64XGagTag22P.1.140.000096
ORF864E64XGagTag22Q.10.000253
ORF864E64XGagTag11AD.20.000219
ORF864E64XGagTag11AE.80.000489
ORF864E64XGagTag11AY.1100.000113
ORF864E64XGagTag11AY.116.10.000311
ORF864E64XGagTag11AY.1170.000085
ORF864E64XGagTag11AY.1180.000063
ORF864E64XGagTag11AY.140.000088
ORF864E64XGagTag11AY.240.000431
ORF864E64XGagTag11AY.340.000097
ORF864E64XGagTag11AY.39.10.00004
ORF864E64XGagTag11AY.46.40.000165
ORF864E64XGagTag11AY.480.000465
ORF864E64XGagTag11AY.5.30.000337
ORF864E64XGagTag11AY.5.40.000277
ORF864E64XGagTag11AY.660.00107
ORF864E64XGagTag11AY.670.000464
ORF864E64XGagTag11AY.690.000187
ORF864E64XGagTag11AY.75.10.00018
ORF864E64XGagTag11AY.850.000427
ORF864E64XGagTag11AY.9.10.000084
ORF864E64XGagTag11AY.940.000443
ORF864E64XGagTag11AY.980.000079
ORF864E64XGagTag11AY.98.10.000048
ORF864E64XGagTag11B.1.1.10.000327
ORF864E64XGagTag11B.1.1.1610.003534
ORF864E64XGagTag11B.1.1.1710.003676
ORF864E64XGagTag11B.1.1.2140.000055
ORF864E64XGagTag11B.1.1.2730.006757
ORF864E64XGagTag11B.1.1.2770.000759
ORF864E64XGagTag11B.1.1.2940.001266
ORF864E64XGagTag11B.1.1.3170.000412
ORF864E64XGagTag11B.1.1.3180.000302
ORF864E64XGagTag11B.1.1.3690.000446
ORF864E64XGagTag11B.1.1.390.00051
ORF864E64XGagTag11B.1.1470.000756
ORF864E64XGagTag11B.1.160.310.008065
ORF864E64XGagTag11B.1.177.150.000631
ORF864E64XGagTag11B.1.177.420.000894
ORF864E64XGagTag11B.1.177.730.000566
ORF864E64XGagTag11B.1.177.90.001332
ORF864E64XGagTag11B.1.214.20.0006
ORF864E64XGagTag11B.1.2210.000071
ORF864E64XGagTag11B.1.2430.00007
ORF864E64XGagTag11B.1.258.110.000396
ORF864E64XGagTag11B.1.3510.00003
ORF864E64XGagTag11B.1.36.10.00114
ORF864E64XGagTag11B.1.36.100.004785
ORF864E64XGagTag11B.1.4110.003704
ORF864E64XGagTag11B.1.4380.006536
ORF864E64XGagTag11B.1.466.20.000391
ORF864E64XGagTag11B.1.5600.00463
ORF864E64XGagTag11B.1.5790.011236
ORF864E64XGagTag11B.1.5990.00365
ORF864E64XGagTag11B.1.617.10.000129
ORF864E64XGagTag11C.170.055556
ORF864E64XGagTag11C.2.10.006667
ORF864E64XGagTag11C.37.10.002618
ORF864E64XGagTag11P.1.160.000374
ORF864E64XGagTag11P.40.003802
ORF864E64XGagTag11Q.40.000455
ORF864E64XGagTag11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.