CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 64

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF8	64	E64X		nonsyn	Gag	Tag	11986	11986	1	28083-28085
ORF8	64	E64D		nonsyn	gaG	gaT	2876	2854	0.99235	28083-28085
ORF8	64	E64D		nonsyn	gaG	gaC	2876	22	0.00764951	28083-28085
ORF8	64	E64del		del	GAG	---	1112	1112	1	28083-28085
ORF8	64	E64V		nonsyn	gAg	gTg	607	601	0.990115	28083-28085
ORF8	64	E64V		nonsyn	gAG	gTC	607	3	0.00494234	28083-28085
ORF8	64	E64V		nonsyn	gAG	gTT	607	3	0.00494234	28083-28085
ORF8	64	E64G		nonsyn	gAg	gGg	379	375	0.989446	28083-28085
ORF8	64	E64G		nonsyn	gAG	gGT	379	2	0.00527705	28083-28085
ORF8	64	E64G		nonsyn	gAG	gGA	379	2	0.00527705	28083-28085
ORF8	64	E64E		syn	gaG	gaA	267	267	1	28083-28085
ORF8	64	E64A		nonsyn	gAg	gCg	155	142	0.916129	28083-28085
ORF8	64	E64A		nonsyn	gAG	gCT	155	10	0.0645161	28083-28085
ORF8	64	E64A		nonsyn	gAG	gCC	155	3	0.0193548	28083-28085
ORF8	64	E64K		nonsyn	Gag	Aag	106	106	1	28083-28085
ORF8	64	E64Q		nonsyn	Gag	Cag	55	55	1	28083-28085
ORF8	64	E64Y		nonsyn	GaG	TaT	36	34	0.944444	28083-28085
ORF8	64	E64Y		nonsyn	GaG	TaC	36	2	0.0555556	28083-28085
ORF8	64	E64S		nonsyn	GAg	TCg	22	11	0.5	28083-28085
ORF8	64	E64S		nonsyn	GAG	TCT	22	10	0.454545	28083-28085
ORF8	64	E64S		nonsyn	GAG	TCC	22	1	0.0454545	28083-28085
ORF8	64	E64del1		del	gaG	ga-	12	6	0.5	28083-28085
ORF8	64	E64del1		del	Gag	-ag	12	6	0.5	28083-28085
ORF8	64	E64W		nonsyn	GAg	TGg	8	8	1	28083-28085
ORF8	64	E64del2		del	GAg	--g	5	3	0.6	28083-28085
ORF8	64	E64del2		del	gAG	g--	5	1	0.2	28083-28085
ORF8	64	E64del2		del	GAG	--T	5	1	0.2	28083-28085
ORF8	64	E64L		nonsyn	GAg	TTg	4	2	0.5	28083-28085
ORF8	64	E64L		nonsyn	GAg	CTg	4	1	0.25	28083-28085
ORF8	64	E64L		nonsyn	GAG	CTT	4	1	0.25	28083-28085
ORF8	64	E64M		nonsyn	GAg	ATg	3	3	1	28083-28085
ORF8	64	E64F		nonsyn	GAG	TTT	3	2	0.666667	28083-28085
ORF8	64	E64F		nonsyn	GAG	TTC	3	1	0.333333	28083-28085
ORF8	64	E64T		nonsyn	GAg	ACg	3	1	0.333333	28083-28085
ORF8	64	E64T		nonsyn	GAG	ACC	3	1	0.333333	28083-28085
ORF8	64	E64T		nonsyn	GAG	ACT	3	1	0.333333	28083-28085
ORF8	64	E64P		nonsyn	GAG	CCT	2	1	0.5	28083-28085
ORF8	64	E64I		nonsyn	GAG	ATT	2	1	0.5	28083-28085
ORF8	64	E64N		nonsyn	GaG	AaT	2	1	0.5	28083-28085
ORF8	64	E64P		nonsyn	GAg	CCg	2	1	0.5	28083-28085
ORF8	64	E64N		nonsyn	GaG	AaC	2	1	0.5	28083-28085
ORF8	64	E64I		nonsyn	GAG	ATC	2	1	0.5	28083-28085

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF8	64	E64X	Gag	Tag	11986	11986	All	0.002292
ORF8	64	E64X	Gag	Tag	8415	8415	B.1.258.17	0.874922
ORF8	64	E64D	gaG	gaT	2854	2876	All	0.000546
ORF8	64	E64D	gaG	gaC	22	2876	All	0.000004
ORF8	64	E64del	GAG	---	1112	1112	All	0.000213
ORF8	64	E64D	gaG	gaT	867	868	B.1.1.7	0.000776
ORF8	64	E64D	gaG	gaC	1	868	B.1.1.7	0.000001
ORF8	64	E64V	gAg	gTg	601	607	All	0.000115
ORF8	64	E64V	gAG	gTC	3	607	All	0.000001
ORF8	64	E64V	gAG	gTT	3	607	All	0.000001
ORF8	64	E64X	Gag	Tag	560	560	B.1.160	0.017465
ORF8	64	E64X	Gag	Tag	386	386	AY.20	0.015002
ORF8	64	E64G	gAg	gGg	375	379	All	0.000072
ORF8	64	E64G	gAG	gGT	2	379	All	0
ORF8	64	E64G	gAG	gGA	2	379	All	0
ORF8	64	E64V	gAg	gTg	352	352	B.1.1.7	0.000315
ORF8	64	E64D	gaG	gaT	296	300	AY.4	0.000461
ORF8	64	E64D	gaG	gaC	4	300	AY.4	0.000006
ORF8	64	E64del	GAG	---	289	289	B.1.1.7	0.000259
ORF8	64	E64X	Gag	Tag	270	270	B.1.1.7	0.000242
ORF8	64	E64E	gaG	gaA	267	267	All	0.000051
ORF8	64	E64X	Gag	Tag	226	226	B.1.1.74	0.974138
ORF8	64	E64X	Gag	Tag	183	183	S.1	0.905941
ORF8	64	E64D	gaG	gaT	182	182	AY.25	0.001095
ORF8	64	E64X	Gag	Tag	181	181	AY.4	0.000282
ORF8	64	E64D	gaG	gaT	172	175	B.1.617.2	0.000648
ORF8	64	E64D	gaG	gaC	3	175	B.1.617.2	0.000011
ORF8	64	E64X	Gag	Tag	173	173	B.1.177	0.002278
ORF8	64	E64E	gaG	gaA	168	168	B.1.1.7	0.00015
ORF8	64	E64G	gAg	gGg	162	162	B.1.1.7	0.000145
ORF8	64	E64A	gAg	gCg	142	155	All	0.000027
ORF8	64	E64A	gAG	gCT	10	155	All	0.000002
ORF8	64	E64A	gAG	gCC	3	155	All	0.000001
ORF8	64	E64D	gaG	gaT	143	144	AY.43	0.000634
ORF8	64	E64D	gaG	gaC	1	144	AY.43	0.000004
ORF8	64	E64X	Gag	Tag	140	140	B.1.1.517	0.952381
ORF8	64	E64X	Gag	Tag	126	126	B.1.617.2	0.000474
ORF8	64	E64X	Gag	Tag	118	118	B.1	0.001081
ORF8	64	E64D	gaG	gaT	115	115	AY.54	0.010965
ORF8	64	E64K	Gag	Aag	106	106	All	0.00002
ORF8	64	E64D	gaG	gaT	88	89	B.1.177	0.001159
ORF8	64	E64D	gaG	gaC	1	89	B.1.177	0.000013
ORF8	64	E64V	gAg	gTg	86	86	B.1.1.214	0.004769
ORF8	64	E64D	gaG	gaT	77	77	B.1.1.348	0.061306
ORF8	64	E64D	gaG	gaT	72	72	B.1.526	0.001692
ORF8	64	E64del	GAG	---	68	68	AY.103	0.000422
ORF8	64	E64del	GAG	---	68	68	AY.4	0.000106
ORF8	64	E64X	Gag	Tag	62	62	B.1.1.420	0.062374
ORF8	64	E64D	gaG	gaT	61	61	B.1.2	0.000537
ORF8	64	E64del	GAG	---	58	58	B.1.1.294	0.073418
ORF8	64	E64Q	Gag	Cag	55	55	All	0.000011
ORF8	64	E64V	gAg	gTg	54	54	AY.4	0.000084
ORF8	64	E64X	Gag	Tag	53	53	AY.43	0.000235
ORF8	64	E64X	Gag	Tag	50	50	B.1.2	0.00044
ORF8	64	E64X	Gag	Tag	49	49	AY.3	0.000487
ORF8	64	E64D	gaG	gaT	49	49	AY.3	0.000487
ORF8	64	E64D	gaG	gaT	48	48	AY.120	0.001785
ORF8	64	E64D	gaG	gaT	48	48	AY.42	0.001931
ORF8	64	E64del	GAG	---	48	48	AY.44	0.000292
ORF8	64	E64X	Gag	Tag	45	45	B.1.177.4	0.009498
ORF8	64	E64del	GAG	---	45	45	B.1.351	0.001338
ORF8	64	E64X	Gag	Tag	43	43	B.1.36.8	0.043
ORF8	64	E64X	Gag	Tag	41	41	P.1	0.000646
ORF8	64	E64D	gaG	gaT	40	40	P.1	0.00063
ORF8	64	E64del	GAG	---	39	39	AY.29	0.000615
ORF8	64	E64X	Gag	Tag	39	39	AY.44	0.000237
ORF8	64	E64del	GAG	---	39	39	B.1.160	0.001216
ORF8	64	E64K	Gag	Aag	38	38	B.1.1.7	0.000034
ORF8	64	E64D	gaG	gaT	34	37	B.1	0.000311
ORF8	64	E64D	gaG	gaC	3	37	B.1	0.000027
ORF8	64	E64Y	GaG	TaT	34	36	All	0.000007
ORF8	64	E64Y	GaG	TaC	2	36	All	0
ORF8	64	E64D	gaG	gaT	36	36	AY.103	0.000224
ORF8	64	E64X	Gag	Tag	35	35	AY.103	0.000217
ORF8	64	E64X	Gag	Tag	35	35	AY.25	0.000211
ORF8	64	E64del	GAG	---	35	35	B.1.1	0.000635
ORF8	64	E64D	gaG	gaT	34	34	AY.44	0.000207
ORF8	64	E64X	Gag	Tag	34	34	B.1.1	0.000617
ORF8	64	E64del	GAG	---	34	34	B.1.1.222	0.006936
ORF8	64	E64del	GAG	---	33	33	B.1.243	0.002296
ORF8	64	E64A	gAg	gCg	31	31	B.1.429	0.000729
ORF8	64	E64X	Gag	Tag	30	30	B.1.1.222	0.00612
ORF8	64	E64X	Gag	Tag	30	30	B.1.422	0.02437
ORF8	64	E64A	gAg	gCg	29	29	AY.44	0.000177
ORF8	64	E64G	gAg	gGg	29	29	B.1.2	0.000255
ORF8	64	E64X	Gag	Tag	28	28	AY.6	0.001152
ORF8	64	E64X	Gag	Tag	28	28	B.1.609	0.013423
ORF8	64	E64D	gaG	gaT	28	28	C.37	0.00325
ORF8	64	E64X	Gag	Tag	25	25	AY.42	0.001006
ORF8	64	E64X	Gag	Tag	25	25	B.1.1.25	0.014213
ORF8	64	E64K	Gag	Aag	25	25	B.1.1.467	0.480769
ORF8	64	E64X	Gag	Tag	24	24	B.1.258	0.001597
ORF8	64	E64A	gAg	gCg	23	23	AY.4	0.000036
ORF8	64	E64D	gaG	gaT	23	23	B.1.1	0.000417
ORF8	64	E64S	GAg	TCg	11	22	All	0.000002
ORF8	64	E64S	GAG	TCT	10	22	All	0.000002
ORF8	64	E64S	GAG	TCC	1	22	All	0
ORF8	64	E64D	gaG	gaT	21	21	AY.53	0.006038
ORF8	64	E64X	Gag	Tag	21	21	C.36	0.019126
ORF8	64	E64del	GAG	---	20	20	P.1	0.000315
ORF8	64	E64D	gaG	gaT	19	19	AY.119	0.000671
ORF8	64	E64Q	Gag	Cag	19	19	AY.4	0.00003
ORF8	64	E64X	Gag	Tag	19	19	B.1.258.24	0.204301
ORF8	64	E64del	GAG	---	18	18	AY.118	0.001128
ORF8	64	E64X	Gag	Tag	18	18	AY.33	0.001202
ORF8	64	E64del	GAG	---	18	18	B	0.002301
ORF8	64	E64del	GAG	---	17	17	AY.3	0.000169
ORF8	64	E64G	gAg	gGg	17	17	AY.33	0.001135
ORF8	64	E64E	gaG	gaA	17	17	AY.4	0.000026
ORF8	64	E64Q	Gag	Cag	17	17	B.1.1.7	0.000015
ORF8	64	E64V	gAg	gTg	17	17	B.1.617.2	0.000064
ORF8	64	E64S	GAg	TCg	9	17	P.1	0.000142
ORF8	64	E64S	GAG	TCT	8	17	P.1	0.000126
ORF8	64	E64D	gaG	gaT	16	16	AY.29	0.000252
ORF8	64	E64G	gAg	gGg	16	16	AY.4	0.000025
ORF8	64	E64G	gAg	gGg	16	16	AY.44	0.000097
ORF8	64	E64X	Gag	Tag	16	16	B.1.1.217	0.058182
ORF8	64	E64X	Gag	Tag	16	16	B.1.1.519	0.000635
ORF8	64	E64X	Gag	Tag	16	16	B.1.177.86	0.002935
ORF8	64	E64X	Gag	Tag	15	15	AY.100	0.00069
ORF8	64	E64X	Gag	Tag	15	15	AY.29	0.000237
ORF8	64	E64G	gAg	gGg	15	15	B.1.1.28	0.004669
ORF8	64	E64X	Gag	Tag	15	15	B.1.1.50	0.010183
ORF8	64	E64E	gaG	gaA	15	15	B.1.2	0.000132
ORF8	64	E64A	gAg	gCg	10	15	P.1	0.000158
ORF8	64	E64A	gAG	gCT	5	15	P.1	0.000079
ORF8	64	E64Y	GaG	TaT	14	14	AY.4.2	0.000304
ORF8	64	E64X	Gag	Tag	14	14	B.1.621	0.001239
ORF8	64	E64X	Gag	Tag	13	13	AY.102	0.000345
ORF8	64	E64D	gaG	gaT	13	13	AY.33	0.000868
ORF8	64	E64V	gAg	gTg	13	13	AY.99.2	0.001198
ORF8	64	E64V	gAg	gTg	13	13	B.1.1.519	0.000516
ORF8	64	E64del	GAG	---	13	13	B.1.258.17	0.001352
ORF8	64	E64del1	gaG	ga-	6	12	All	0.000001
ORF8	64	E64del1	Gag	-ag	6	12	All	0.000001
ORF8	64	E64Q	Gag	Cag	12	12	AY.103	0.000075
ORF8	64	E64D	gaG	gaT	12	12	AY.46.5	0.002381
ORF8	64	E64D	gaG	gaT	12	12	AY.74	0.001388
ORF8	64	E64X	Gag	Tag	12	12	B.1.1.406	0.077922
ORF8	64	E64del	GAG	---	12	12	B.1.2	0.000106
ORF8	64	E64X	Gag	Tag	12	12	B.1.36	0.001751
ORF8	64	E64D	gaG	gaT	12	12	B.1.36	0.001751
ORF8	64	E64G	gAg	gGg	12	12	B.1.617.2	0.000045
ORF8	64	E64D	gaG	gaT	11	11	AY.102	0.000292
ORF8	64	E64D	gaG	gaT	11	11	AY.39	0.000272
ORF8	64	E64X	Gag	Tag	11	11	AY.5	0.000227
ORF8	64	E64E	gaG	gaA	11	11	B.1	0.000101
ORF8	64	E64A	gAG	gCT	4	11	B.1.1.28	0.001245
ORF8	64	E64A	gAg	gCg	4	11	B.1.1.28	0.001245
ORF8	64	E64A	gAG	gCC	3	11	B.1.1.28	0.000934
ORF8	64	E64del	GAG	---	11	11	B.1.1.318	0.003319
ORF8	64	E64X	Gag	Tag	11	11	P.2	0.002053
ORF8	64	E64X	Gag	Tag	10	10	AY.101	0.004904
ORF8	64	E64X	Gag	Tag	10	10	B.1.258.4	0.034483
ORF8	64	E64D	gaG	gaT	9	9	A.2.5	0.004491
ORF8	64	E64G	gAg	gGg	9	9	AY.24	0.003879
ORF8	64	E64del	GAG	---	9	9	AY.25	0.000054
ORF8	64	E64D	gaG	gaT	9	9	AY.7.2	0.005034
ORF8	64	E64D	gaG	gaT	6	9	B.1.1.28	0.001867
ORF8	64	E64V	gAg	gTg	3	9	B.1.1.28	0.000934
ORF8	64	E64D	gaG	gaC	3	9	B.1.1.28	0.000934
ORF8	64	E64V	gAG	gTC	3	9	B.1.1.28	0.000934
ORF8	64	E64V	gAG	gTT	3	9	B.1.1.28	0.000934
ORF8	64	E64G	gAg	gGg	9	9	B.1.160	0.000281
ORF8	64	E64del	GAG	---	9	9	B.1.617.2	0.000034
ORF8	64	E64W	GAg	TGg	8	8	All	0.000002
ORF8	64	E64del	GAG	---	8	8	AY.119	0.000282
ORF8	64	E64W	GAg	TGg	8	8	AY.20	0.000311
ORF8	64	E64X	Gag	Tag	8	8	AY.23	0.000558
ORF8	64	E64X	Gag	Tag	8	8	AY.39	0.000198
ORF8	64	E64del	GAG	---	8	8	B.1.1.284	0.000859
ORF8	64	E64A	gAg	gCg	8	8	B.1.1.7	0.000007
ORF8	64	E64del	GAG	---	8	8	B.1.177	0.000105
ORF8	64	E64D	gaG	gaT	8	8	B.1.177.82	0.003819
ORF8	64	E64D	gaG	gaT	8	8	B.1.36.29	0.004139
ORF8	64	E64X	Gag	Tag	8	8	B.1.408	0.02952
ORF8	64	E64D	gaG	gaT	8	8	B.1.438.1	0.000858
ORF8	64	E64X	Gag	Tag	8	8	B.1.621.1	0.004047
ORF8	64	E64D	gaG	gaT	7	7	AY.100	0.000322
ORF8	64	E64D	gaG	gaT	7	7	AY.118	0.000439
ORF8	64	E64D	gaG	gaT	6	7	AY.20	0.000233
ORF8	64	E64D	gaG	gaC	1	7	AY.20	0.000039
ORF8	64	E64D	gaG	gaT	7	7	AY.27	0.000453
ORF8	64	E64D	gaG	gaT	6	7	AY.47	0.000187
ORF8	64	E64D	gaG	gaC	1	7	AY.47	0.000031
ORF8	64	E64del	GAG	---	7	7	AY.75	0.000392
ORF8	64	E64del	GAG	---	7	7	AY.98.1	0.000339
ORF8	64	E64del	GAG	---	7	7	B.1.1.265	0.022082
ORF8	64	E64del	GAG	---	7	7	B.1.1.519	0.000278
ORF8	64	E64X	Gag	Tag	7	7	B.1.149	0.023973
ORF8	64	E64X	Gag	Tag	7	7	B.1.234	0.000924
ORF8	64	E64del	GAG	---	7	7	B.1.36.16	0.009972
ORF8	64	E64K	Gag	Aag	7	7	B.1.617.2	0.000026
ORF8	64	E64del	GAG	---	7	7	B.1.628	0.002467
ORF8	64	E64X	Gag	Tag	6	6	AY.111	0.001099
ORF8	64	E64X	Gag	Tag	6	6	AY.113	0.000854
ORF8	64	E64X	Gag	Tag	6	6	AY.114	0.001387
ORF8	64	E64del	GAG	---	6	6	AY.26	0.00017
ORF8	64	E64X	Gag	Tag	6	6	AY.26	0.00017
ORF8	64	E64G	gAg	gGg	6	6	AY.3	0.00006
ORF8	64	E64X	Gag	Tag	6	6	AY.36	0.000889
ORF8	64	E64X	Gag	Tag	6	6	AY.4.2	0.00013
ORF8	64	E64G	gAg	gGg	6	6	AY.43	0.000027
ORF8	64	E64del	GAG	---	6	6	AY.59	0.003178
ORF8	64	E64X	Gag	Tag	6	6	AY.9.2	0.00022
ORF8	64	E64X	Gag	Tag	6	6	B	0.000767
ORF8	64	E64del	GAG	---	6	6	B.1.243.2	0.086957
ORF8	64	E64del	GAG	---	6	6	P.1.14	0.000287
ORF8	64	E64del	GAG	---	6	6	P.1.17	0.000971
ORF8	64	E64D	gaG	gaT	6	6	Q.8	0.000989
ORF8	64	E64X	Gag	Tag	5	5	A.2.5	0.002495
ORF8	64	E64del2	GAg	--g	3	5	All	0.000001
ORF8	64	E64del2	GAG	--T	1	5	All	0
ORF8	64	E64del2	gAG	g--	1	5	All	0
ORF8	64	E64V	gAg	gTg	5	5	AY.16	0.001898
ORF8	64	E64G	gAg	gGg	5	5	AY.26	0.000142
ORF8	64	E64del	GAG	---	5	5	AY.29.1	0.001103
ORF8	64	E64A	gAg	gCg	5	5	AY.3	0.00005
ORF8	64	E64V	gAg	gTg	5	5	AY.39	0.000124
ORF8	64	E64X	Gag	Tag	5	5	AY.45	0.000608
ORF8	64	E64D	gaG	gaT	5	5	AY.46.6	0.000361
ORF8	64	E64D	gaG	gaT	5	5	AY.5.1	0.018797
ORF8	64	E64del	GAG	---	5	5	B.1	0.000046
ORF8	64	E64del	GAG	---	5	5	B.1.1.214	0.000277
ORF8	64	E64D	gaG	gaT	5	5	B.1.1.519	0.000199
ORF8	64	E64X	Gag	Tag	5	5	B.1.1.528	0.024038
ORF8	64	E64V	gAg	gTg	5	5	B.1.157	0.014925
ORF8	64	E64del	GAG	---	5	5	B.1.240	0.001078
ORF8	64	E64D	gaG	gaT	5	5	B.1.351	0.000149
ORF8	64	E64X	Gag	Tag	5	5	B.1.525	0.000566
ORF8	64	E64X	Gag	Tag	5	5	B.1.561	0.001985
ORF8	64	E64A	gAg	gCg	5	5	B.1.617.2	0.000019
ORF8	64	E64X	Gag	Tag	5	5	B.4.1	0.09434
ORF8	64	E64del	GAG	---	5	5	C.37	0.00058
ORF8	64	E64E	gaG	gaA	5	5	P.1	0.000079
ORF8	64	E64Y	GaG	TaT	5	5	P.1	0.000079
ORF8	64	E64V	gAg	gTg	5	5	P.1	0.000079
ORF8	64	E64del	GAG	---	5	5	P.1.1	0.001588
ORF8	64	E64L	GAg	TTg	2	4	All	0
ORF8	64	E64L	GAG	CTT	1	4	All	0
ORF8	64	E64L	GAg	CTg	1	4	All	0
ORF8	64	E64V	gAg	gTg	4	4	AY.103	0.000025
ORF8	64	E64D	gaG	gaT	4	4	AY.14	0.000352
ORF8	64	E64E	gaG	gaA	4	4	AY.29	0.000063
ORF8	64	E64D	gaG	gaT	4	4	AY.34.1	0.00204
ORF8	64	E64D	gaG	gaT	4	4	AY.39.1	0.000158
ORF8	64	E64del	GAG	---	4	4	AY.4.2	0.000087
ORF8	64	E64D	gaG	gaT	4	4	AY.45	0.000487
ORF8	64	E64D	gaG	gaT	4	4	AY.46.3	0.003735
ORF8	64	E64D	gaG	gaT	4	4	AY.5	0.000083
ORF8	64	E64X	Gag	Tag	4	4	AY.59	0.002119
ORF8	64	E64X	Gag	Tag	4	4	AY.7.1	0.000451
ORF8	64	E64del	GAG	---	4	4	AY.7.2	0.002237
ORF8	64	E64D	gaG	gaT	4	4	AY.9	0.00027
ORF8	64	E64D	gaG	gaT	4	4	AY.98	0.000316
ORF8	64	E64D	gaG	gaT	4	4	AY.99.2	0.000369
ORF8	64	E64X	Gag	Tag	4	4	AY.99.2	0.000369
ORF8	64	E64G	gAg	gGg	3	4	B.1.1	0.000054
ORF8	64	E64G	gAG	gGT	1	4	B.1.1	0.000018
ORF8	64	E64D	gaG	gaT	4	4	B.1.1.216	0.003562
ORF8	64	E64X	Gag	Tag	4	4	B.1.1.28	0.001245
ORF8	64	E64X	Gag	Tag	4	4	B.1.1.326	0.007042
ORF8	64	E64X	Gag	Tag	4	4	B.1.177.10	0.003512
ORF8	64	E64G	gAg	gGg	4	4	B.1.177.51	0.018265
ORF8	64	E64K	Gag	Aag	4	4	B.1.2	0.000035
ORF8	64	E64G	gAg	gGg	4	4	B.1.346	0.005242
ORF8	64	E64del1	Gag	-ag	2	4	B.1.36	0.000292
ORF8	64	E64del1	gaG	ga-	2	4	B.1.36	0.000292
ORF8	64	E64X	Gag	Tag	4	4	B.1.36.31	0.007005
ORF8	64	E64X	Gag	Tag	4	4	B.1.375	0.003279
ORF8	64	E64D	gaG	gaT	4	4	B.1.429	0.000094
ORF8	64	E64del	GAG	---	4	4	B.1.429	0.000094
ORF8	64	E64X	Gag	Tag	4	4	B.1.429	0.000094
ORF8	64	E64D	gaG	gaT	4	4	B.1.525	0.000453
ORF8	64	E64D	gaG	gaT	4	4	B.1.621	0.000354
ORF8	64	E64X	Gag	Tag	4	4	C.37	0.000464
ORF8	64	E64X	Gag	Tag	3	3	A.23.1	0.002113
ORF8	64	E64E	gaG	gaA	3	3	AD.2	0.000657
ORF8	64	E64D	gaG	gaT	3	3	AE.8	0.001467
ORF8	64	E64M	GAg	ATg	3	3	All	0.000001
ORF8	64	E64F	GAG	TTT	2	3	All	0
ORF8	64	E64F	GAG	TTC	1	3	All	0
ORF8	64	E64T	GAG	ACT	1	3	All	0
ORF8	64	E64T	GAg	ACg	1	3	All	0
ORF8	64	E64T	GAG	ACC	1	3	All	0
ORF8	64	E64del	GAG	---	3	3	AY.113	0.000427
ORF8	64	E64D	gaG	gaT	3	3	AY.116.1	0.000934
ORF8	64	E64V	gAg	gTg	3	3	AY.120	0.000112
ORF8	64	E64E	gaG	gaA	3	3	AY.20	0.000117
ORF8	64	E64D	gaG	gaT	3	3	AY.21	0.005693
ORF8	64	E64E	gaG	gaA	3	3	AY.26	0.000085
ORF8	64	E64E	gaG	gaA	3	3	AY.27	0.000194
ORF8	64	E64D	gaG	gaT	3	3	AY.3.1	0.000256
ORF8	64	E64G	gAg	gGg	3	3	AY.39	0.000074
ORF8	64	E64del	GAG	---	3	3	AY.39	0.000074
ORF8	64	E64K	Gag	Aag	3	3	AY.43	0.000013
ORF8	64	E64del	GAG	---	3	3	AY.43	0.000013
ORF8	64	E64E	gaG	gaA	3	3	AY.44	0.000018
ORF8	64	E64G	gAg	gGg	3	3	AY.47	0.000093
ORF8	64	E64V	gAg	gTg	3	3	AY.47	0.000093
ORF8	64	E64D	gaG	gaT	3	3	AY.61	0.000314
ORF8	64	E64X	Gag	Tag	3	3	AY.71	0.001425
ORF8	64	E64X	Gag	Tag	3	3	AY.9	0.000203
ORF8	64	E64D	gaG	gaT	3	3	AY.9.1	0.000251
ORF8	64	E64D	gaG	gaT	3	3	AY.9.2	0.00011
ORF8	64	E64D	gaG	gaT	3	3	AY.98.1	0.000145
ORF8	64	E64X	Gag	Tag	3	3	AY.99	0.003148
ORF8	64	E64V	gAg	gTg	3	3	B.1.1	0.000054
ORF8	64	E64S	GAG	TCT	1	3	B.1.1.28	0.000311
ORF8	64	E64S	GAG	TCC	1	3	B.1.1.28	0.000311
ORF8	64	E64T	GAg	ACg	1	3	B.1.1.28	0.000311
ORF8	64	E64T	GAG	ACC	1	3	B.1.1.28	0.000311
ORF8	64	E64S	GAg	TCg	1	3	B.1.1.28	0.000311
ORF8	64	E64T	GAG	ACT	1	3	B.1.1.28	0.000311
ORF8	64	E64D	gaG	gaT	3	3	B.1.1.317	0.001235
ORF8	64	E64X	Gag	Tag	3	3	B.1.1.37	0.000579
ORF8	64	E64X	Gag	Tag	3	3	B.1.1.46	0.0131
ORF8	64	E64E	gaG	gaA	3	3	B.1.1.50	0.002037
ORF8	64	E64D	gaG	gaT	3	3	B.1.111	0.003525
ORF8	64	E64G	gAg	gGg	2	3	B.1.177	0.000026
ORF8	64	E64G	gAG	gGA	1	3	B.1.177	0.000013
ORF8	64	E64D	gaG	gaT	3	3	B.1.177.16	0.001993
ORF8	64	E64V	gAg	gTg	3	3	B.1.2	0.000026
ORF8	64	E64del	GAG	---	3	3	B.1.22	0.003953
ORF8	64	E64D	gaG	gaT	3	3	B.1.427	0.000151
ORF8	64	E64K	Gag	Aag	3	3	B.1.429	0.000071
ORF8	64	E64del	GAG	---	3	3	B.1.438.1	0.000322
ORF8	64	E64D	gaG	gaT	3	3	B.1.503	0.007463
ORF8	64	E64del	GAG	---	3	3	B.1.509	0.002597
ORF8	64	E64X	Gag	Tag	3	3	B.1.558	0.013699
ORF8	64	E64Y	GaG	TaT	3	3	B.1.617.2	0.000011
ORF8	64	E64K	Gag	Aag	3	3	C.37	0.000348
ORF8	64	E64L	GAG	CTT	1	3	P.1	0.000016
ORF8	64	E64L	GAg	CTg	1	3	P.1	0.000016
ORF8	64	E64L	GAg	TTg	1	3	P.1	0.000016
ORF8	64	E64E	gaG	gaA	3	3	P.1.14	0.000143
ORF8	64	E64D	gaG	gaT	3	3	P.1.14	0.000143
ORF8	64	E64del	GAG	---	3	3	P.1.15	0.000697
ORF8	64	E64D	gaG	gaT	3	3	P.2	0.00056
ORF8	64	E64D	gaG	gaT	2	2	A	0.000774
ORF8	64	E64P	GAG	CCT	1	2	All	0
ORF8	64	E64I	GAG	ATC	1	2	All	0
ORF8	64	E64N	GaG	AaC	1	2	All	0
ORF8	64	E64N	GaG	AaT	1	2	All	0
ORF8	64	E64I	GAG	ATT	1	2	All	0
ORF8	64	E64P	GAg	CCg	1	2	All	0
ORF8	64	E64V	gAg	gTg	2	2	AY.100	0.000092
ORF8	64	E64del	GAG	---	2	2	AY.102	0.000053
ORF8	64	E64G	gAg	gGg	2	2	AY.103	0.000012
ORF8	64	E64D	gaG	gaT	2	2	AY.110	0.000225
ORF8	64	E64X	Gag	Tag	2	2	AY.116	0.000574
ORF8	64	E64X	Gag	Tag	2	2	AY.119	0.000071
ORF8	64	E64G	gAg	gGg	2	2	AY.12	0.000632
ORF8	64	E64D	gaG	gaT	2	2	AY.12	0.000632
ORF8	64	E64X	Gag	Tag	2	2	AY.120	0.000074
ORF8	64	E64G	gAg	gGg	2	2	AY.121	0.000271
ORF8	64	E64K	Gag	Aag	2	2	AY.20	0.000078
ORF8	64	E64del	GAG	---	2	2	AY.23	0.000139
ORF8	64	E64V	gAg	gTg	2	2	AY.25	0.000012
ORF8	64	E64G	gAg	gGg	2	2	AY.25	0.000012
ORF8	64	E64D	gaG	gaT	2	2	AY.26	0.000057
ORF8	64	E64V	gAg	gTg	2	2	AY.27	0.000129
ORF8	64	E64V	gAg	gTg	2	2	AY.3	0.00002
ORF8	64	E64D	gaG	gaT	2	2	AY.35	0.000466
ORF8	64	E64del	GAG	---	2	2	AY.35	0.000466
ORF8	64	E64G	gAg	gGg	2	2	AY.38	0.000999
ORF8	64	E64del	GAG	---	2	2	AY.39.1	0.000079
ORF8	64	E64D	gaG	gaT	2	2	AY.4.2	0.000043
ORF8	64	E64X	Gag	Tag	2	2	AY.4.2.1	0.000298
ORF8	64	E64E	gaG	gaA	2	2	AY.43	0.000009
ORF8	64	E64V	gAg	gTg	2	2	AY.44	0.000012
ORF8	64	E64del	GAG	---	2	2	AY.47	0.000062
ORF8	64	E64del	GAG	---	2	2	AY.48	0.00093
ORF8	64	E64X	Gag	Tag	2	2	AY.54	0.000191
ORF8	64	E64D	gaG	gaT	2	2	AY.55	0.001835
ORF8	64	E64E	gaG	gaA	2	2	AY.6	0.000082
ORF8	64	E64D	gaG	gaT	2	2	AY.60	0.001876
ORF8	64	E64X	Gag	Tag	2	2	AY.61	0.00021
ORF8	64	E64Y	GaG	TaT	2	2	AY.62	0.000871
ORF8	64	E64G	gAg	gGg	2	2	AY.74	0.000231
ORF8	64	E64K	Gag	Aag	2	2	AY.74	0.000231
ORF8	64	E64X	Gag	Tag	2	2	AY.75	0.000112
ORF8	64	E64D	gaG	gaT	2	2	AY.75	0.000112
ORF8	64	E64A	gAg	gCg	2	2	AY.85	0.000854
ORF8	64	E64G	gAg	gGg	2	2	AY.9.2	0.000073
ORF8	64	E64G	gAg	gGg	2	2	AY.98.1	0.000097
ORF8	64	E64A	gAg	gCg	2	2	AY.99.2	0.000184
ORF8	64	E64Q	Gag	Cag	2	2	B.1	0.000018
ORF8	64	E64X	Gag	Tag	2	2	B.1.1.10	0.00223
ORF8	64	E64G	gAg	gGg	2	2	B.1.1.132	0.029851
ORF8	64	E64X	Gag	Tag	2	2	B.1.1.141	0.004024
ORF8	64	E64D	gaG	gaT	2	2	B.1.1.170	0.002494
ORF8	64	E64X	Gag	Tag	2	2	B.1.1.216	0.001781
ORF8	64	E64D	gaG	gaT	2	2	B.1.1.222	0.000408
ORF8	64	E64E	gaG	gaA	2	2	B.1.1.25	0.001137
ORF8	64	E64I	GAG	ATT	1	2	B.1.1.28	0.000311
ORF8	64	E64Y	GaG	TaT	1	2	B.1.1.28	0.000311
ORF8	64	E64F	GAG	TTC	1	2	B.1.1.28	0.000311
ORF8	64	E64Y	GaG	TaC	1	2	B.1.1.28	0.000311
ORF8	64	E64I	GAG	ATC	1	2	B.1.1.28	0.000311
ORF8	64	E64F	GAG	TTT	1	2	B.1.1.28	0.000311
ORF8	64	E64N	GaG	AaT	1	2	B.1.1.28	0.000311
ORF8	64	E64N	GaG	AaC	1	2	B.1.1.28	0.000311
ORF8	64	E64X	Gag	Tag	2	2	B.1.1.291	0.001485
ORF8	64	E64X	Gag	Tag	2	2	B.1.1.306	0.000877
ORF8	64	E64X	Gag	Tag	2	2	B.1.1.315	0.016949
ORF8	64	E64D	gaG	gaT	2	2	B.1.1.318	0.000604
ORF8	64	E64X	Gag	Tag	2	2	B.1.1.354	0.008772
ORF8	64	E64K	Gag	Aag	2	2	B.1.1.398	0.006452
ORF8	64	E64D	gaG	gaT	2	2	B.1.1.58	0.010753
ORF8	64	E64M	GAg	ATg	2	2	B.1.1.7	0.000002
ORF8	64	E64Y	GaG	TaT	2	2	B.1.1.7	0.000002
ORF8	64	E64X	Gag	Tag	2	2	B.1.1.70	0.000682
ORF8	64	E64G	gAg	gGg	2	2	B.1.1.70	0.000682
ORF8	64	E64D	gaG	gaT	2	2	B.1.160	0.000062
ORF8	64	E64K	Gag	Aag	2	2	B.1.177	0.000026
ORF8	64	E64D	gaG	gaT	2	2	B.1.177.32	0.002699
ORF8	64	E64del	GAG	---	2	2	B.1.210	0.004264
ORF8	64	E64D	gaG	gaT	2	2	B.1.221	0.000142
ORF8	64	E64G	gAg	gGg	2	2	B.1.243	0.000139
ORF8	64	E64D	gaG	gaC	1	2	B.1.243	0.00007
ORF8	64	E64D	gaG	gaT	1	2	B.1.243	0.00007
ORF8	64	E64A	gAg	gCg	2	2	B.1.258	0.000133
ORF8	64	E64G	gAg	gGg	2	2	B.1.351	0.000059
ORF8	64	E64D	gaG	gaT	2	2	B.1.351.5	0.001199
ORF8	64	E64D	gaG	gaT	2	2	B.1.36.10	0.009569
ORF8	64	E64A	gAg	gCg	2	2	B.1.36.31	0.003503
ORF8	64	E64X	Gag	Tag	2	2	B.1.362	0.003082
ORF8	64	E64D	gaG	gaT	2	2	B.1.400	0.000858
ORF8	64	E64del	GAG	---	2	2	B.1.427	0.000101
ORF8	64	E64G	gAg	gGg	2	2	B.1.429	0.000047
ORF8	64	E64X	Gag	Tag	2	2	B.1.438.1	0.000215
ORF8	64	E64D	gaG	gaT	2	2	B.1.470	0.002809
ORF8	64	E64K	Gag	Aag	2	2	B.1.499	0.002101
ORF8	64	E64V	gAg	gTg	2	2	B.1.524	0.002813
ORF8	64	E64X	Gag	Tag	2	2	B.1.526	0.000047
ORF8	64	E64del	GAG	---	2	2	B.1.526	0.000047
ORF8	64	E64D	gaG	gaT	2	2	B.1.609	0.000959
ORF8	64	E64X	Gag	Tag	2	2	B.40	0.000729
ORF8	64	E64A	gAg	gCg	2	2	C.35	0.001548
ORF8	64	E64D	gaG	gaT	2	2	C.36.3	0.001134
ORF8	64	E64G	gAg	gGg	2	2	C.37	0.000232
ORF8	64	E64del1	gaG	ga-	2	2	P.1	0.000032
ORF8	64	E64G	gAg	gGg	2	2	P.1	0.000032
ORF8	64	E64P	GAg	CCg	1	2	P.1	0.000016
ORF8	64	E64P	GAG	CCT	1	2	P.1	0.000016
ORF8	64	E64del	GAG	---	2	2	P.1.12	0.000968
ORF8	64	E64X	Gag	Tag	2	2	P.1.14	0.000096
ORF8	64	E64G	gAg	gGg	2	2	P.1.15	0.000465
ORF8	64	E64D	gaG	gaT	2	2	P.1.15	0.000465
ORF8	64	E64del	GAG	---	2	2	P.1.7	0.000639
ORF8	64	E64S	GAg	TCg	1	2	P.2	0.000187
ORF8	64	E64A	gAg	gCg	1	2	P.2	0.000187
ORF8	64	E64S	GAG	TCT	1	2	P.2	0.000187
ORF8	64	E64A	gAG	gCT	1	2	P.2	0.000187
ORF8	64	E64X	Gag	Tag	2	2	Q.1	0.000253
ORF8	64	E64A	gAg	gCg	2	2	R.1	0.00018
ORF8	64	E64E	gaG	gaA	1	1		0.055556
ORF8	64	E64A	gAg	gCg	1	1	A	0.000387
ORF8	64	E64E	gaG	gaA	1	1	A.23.1	0.000704
ORF8	64	E64X	Gag	Tag	1	1	AD.2	0.000219
ORF8	64	E64del	GAG	---	1	1	AE.4	0.043478
ORF8	64	E64X	Gag	Tag	1	1	AE.8	0.000489
ORF8	64	E64D	gaG	gaT	1	1	AP.1	0.001502
ORF8	64	E64D	gaG	gaT	1	1	AU.3	0.00211
ORF8	64	E64A	gAg	gCg	1	1	AY.100	0.000046
ORF8	64	E64E	gaG	gaA	1	1	AY.100	0.000046
ORF8	64	E64G	gAg	gGg	1	1	AY.100	0.000046
ORF8	64	E64V	gAg	gTg	1	1	AY.102	0.000027
ORF8	64	E64Y	GaG	TaT	1	1	AY.102	0.000027
ORF8	64	E64K	Gag	Aag	1	1	AY.103	0.000006
ORF8	64	E64D	gaG	gaT	1	1	AY.106	0.000335
ORF8	64	E64del	GAG	---	1	1	AY.108	0.001103
ORF8	64	E64D	gaG	gaT	1	1	AY.109	0.00074
ORF8	64	E64G	gAg	gGg	1	1	AY.11	0.001339
ORF8	64	E64X	Gag	Tag	1	1	AY.110	0.000113
ORF8	64	E64A	gAg	gCg	1	1	AY.113	0.000142
ORF8	64	E64D	gaG	gaT	1	1	AY.113	0.000142
ORF8	64	E64X	Gag	Tag	1	1	AY.116.1	0.000311
ORF8	64	E64A	gAg	gCg	1	1	AY.117	0.000085
ORF8	64	E64D	gaG	gaT	1	1	AY.117	0.000085
ORF8	64	E64X	Gag	Tag	1	1	AY.117	0.000085
ORF8	64	E64X	Gag	Tag	1	1	AY.118	0.000063
ORF8	64	E64G	gAg	gGg	1	1	AY.119	0.000035
ORF8	64	E64del	GAG	---	1	1	AY.120.1	0.000321
ORF8	64	E64D	gaG	gaT	1	1	AY.120.2	0.001285
ORF8	64	E64X	Gag	Tag	1	1	AY.14	0.000088
ORF8	64	E64D	gaG	gaT	1	1	AY.16	0.00038
ORF8	64	E64del	GAG	---	1	1	AY.20	0.000039
ORF8	64	E64D	gaG	gaT	1	1	AY.23	0.00007
ORF8	64	E64V	gAg	gTg	1	1	AY.23	0.00007
ORF8	64	E64Y	GaG	TaT	1	1	AY.23	0.00007
ORF8	64	E64D	gaG	gaT	1	1	AY.23.1	0.000417
ORF8	64	E64X	Gag	Tag	1	1	AY.24	0.000431
ORF8	64	E64Q	Gag	Cag	1	1	AY.25	0.000006
ORF8	64	E64Y	GaG	TaT	1	1	AY.25	0.000006
ORF8	64	E64K	Gag	Aag	1	1	AY.3	0.00001
ORF8	64	E64del	GAG	---	1	1	AY.3.1	0.000085
ORF8	64	E64G	gAg	gGg	1	1	AY.34	0.000097
ORF8	64	E64X	Gag	Tag	1	1	AY.34	0.000097
ORF8	64	E64del	GAG	---	1	1	AY.34	0.000097
ORF8	64	E64V	gAg	gTg	1	1	AY.34.1	0.00051
ORF8	64	E64D	gaG	gaT	1	1	AY.36	0.000148
ORF8	64	E64D	gaG	gaT	1	1	AY.37	0.000316
ORF8	64	E64Q	Gag	Cag	1	1	AY.39	0.000025
ORF8	64	E64X	Gag	Tag	1	1	AY.39.1	0.00004
ORF8	64	E64K	Gag	Aag	1	1	AY.4	0.000002
ORF8	64	E64E	gaG	gaA	1	1	AY.4.2	0.000022
ORF8	64	E64E	gaG	gaA	1	1	AY.4.2.1	0.000149
ORF8	64	E64D	gaG	gaT	1	1	AY.4.2.1	0.000149
ORF8	64	E64del	GAG	---	1	1	AY.4.4	0.000409
ORF8	64	E64D	gaG	gaC	1	1	AY.4.5	0.000107
ORF8	64	E64D	gaG	gaT	1	1	AY.40	0.000964
ORF8	64	E64V	gAg	gTg	1	1	AY.43	0.000004
ORF8	64	E64A	gAg	gCg	1	1	AY.43	0.000004
ORF8	64	E64A	gAg	gCg	1	1	AY.46	0.000104
ORF8	64	E64E	gaG	gaA	1	1	AY.46	0.000104
ORF8	64	E64X	Gag	Tag	1	1	AY.46.4	0.000165
ORF8	64	E64D	gaG	gaT	1	1	AY.46.4	0.000165
ORF8	64	E64G	gAg	gGg	1	1	AY.46.6	0.000072
ORF8	64	E64A	gAg	gCg	1	1	AY.47	0.000031
ORF8	64	E64X	Gag	Tag	1	1	AY.48	0.000465
ORF8	64	E64E	gaG	gaA	1	1	AY.48	0.000465
ORF8	64	E64D	gaG	gaT	1	1	AY.48	0.000465
ORF8	64	E64K	Gag	Aag	1	1	AY.5	0.000021
ORF8	64	E64V	gAg	gTg	1	1	AY.5.3	0.000337
ORF8	64	E64X	Gag	Tag	1	1	AY.5.3	0.000337
ORF8	64	E64X	Gag	Tag	1	1	AY.5.4	0.000277
ORF8	64	E64E	gaG	gaA	1	1	AY.54	0.000095
ORF8	64	E64del2	GAg	--g	1	1	AY.54	0.000095
ORF8	64	E64D	gaG	gaT	1	1	AY.57	0.000656
ORF8	64	E64del	GAG	---	1	1	AY.58	0.000907
ORF8	64	E64D	gaG	gaT	1	1	AY.58	0.000907
ORF8	64	E64K	Gag	Aag	1	1	AY.61	0.000105
ORF8	64	E64D	gaG	gaT	1	1	AY.62	0.000436
ORF8	64	E64D	gaG	gaT	1	1	AY.65	0.000533
ORF8	64	E64X	Gag	Tag	1	1	AY.66	0.00107
ORF8	64	E64X	Gag	Tag	1	1	AY.67	0.000464
ORF8	64	E64K	Gag	Aag	1	1	AY.67	0.000464
ORF8	64	E64D	gaG	gaT	1	1	AY.68	0.000274
ORF8	64	E64X	Gag	Tag	1	1	AY.69	0.000187
ORF8	64	E64del	GAG	---	1	1	AY.69	0.000187
ORF8	64	E64D	gaG	gaT	1	1	AY.7.1	0.000113
ORF8	64	E64G	gAg	gGg	1	1	AY.71	0.000475
ORF8	64	E64del	GAG	---	1	1	AY.74	0.000116
ORF8	64	E64V	gAg	gTg	1	1	AY.75	0.000056
ORF8	64	E64X	Gag	Tag	1	1	AY.75.1	0.00018
ORF8	64	E64A	gAg	gCg	1	1	AY.75.1	0.00018
ORF8	64	E64E	gaG	gaA	1	1	AY.82	0.001357
ORF8	64	E64del	GAG	---	1	1	AY.84	0.000437
ORF8	64	E64D	gaG	gaC	1	1	AY.85	0.000427
ORF8	64	E64X	Gag	Tag	1	1	AY.85	0.000427
ORF8	64	E64del	GAG	---	1	1	AY.9	0.000068
ORF8	64	E64X	Gag	Tag	1	1	AY.9.1	0.000084
ORF8	64	E64D	gaG	gaT	1	1	AY.9.2.1	0.001976
ORF8	64	E64D	gaG	gaT	1	1	AY.91	0.00073
ORF8	64	E64D	gaG	gaT	1	1	AY.93	0.000273
ORF8	64	E64X	Gag	Tag	1	1	AY.94	0.000443
ORF8	64	E64X	Gag	Tag	1	1	AY.98	0.000079
ORF8	64	E64X	Gag	Tag	1	1	AY.98.1	0.000048
ORF8	64	E64Y	GaG	TaT	1	1	AY.99.2	0.000092
ORF8	64	E64del1	Gag	-ag	1	1	B.1	0.000009
ORF8	64	E64A	gAg	gCg	1	1	B.1	0.000009
ORF8	64	E64G	gAg	gGg	1	1	B.1	0.000009
ORF8	64	E64V	gAg	gTg	1	1	B.1	0.000009
ORF8	64	E64Y	GaG	TaT	1	1	B.1.1	0.000018
ORF8	64	E64K	Gag	Aag	1	1	B.1.1	0.000018
ORF8	64	E64del1	gaG	ga-	1	1	B.1.1	0.000018
ORF8	64	E64X	Gag	Tag	1	1	B.1.1.1	0.000327
ORF8	64	E64X	Gag	Tag	1	1	B.1.1.161	0.003534
ORF8	64	E64X	Gag	Tag	1	1	B.1.1.171	0.003676
ORF8	64	E64del	GAG	---	1	1	B.1.1.174	0.003378
ORF8	64	E64D	gaG	gaT	1	1	B.1.1.192	0.002309
ORF8	64	E64D	gaG	gaT	1	1	B.1.1.214	0.000055
ORF8	64	E64X	Gag	Tag	1	1	B.1.1.214	0.000055
ORF8	64	E64del	GAG	---	1	1	B.1.1.216	0.00089
ORF8	64	E64D	gaG	gaT	1	1	B.1.1.219	0.005
ORF8	64	E64D	gaG	gaT	1	1	B.1.1.232	0.001815
ORF8	64	E64G	gAg	gGg	1	1	B.1.1.234	0.012048
ORF8	64	E64Y	GaG	TaT	1	1	B.1.1.25	0.000569
ORF8	64	E64del	GAG	---	1	1	B.1.1.25	0.000569
ORF8	64	E64D	gaG	gaT	1	1	B.1.1.25	0.000569
ORF8	64	E64K	Gag	Aag	1	1	B.1.1.263	0.001558
ORF8	64	E64del	GAG	---	1	1	B.1.1.269	0.001353
ORF8	64	E64X	Gag	Tag	1	1	B.1.1.273	0.006757
ORF8	64	E64G	gAg	gGg	1	1	B.1.1.277	0.000759
ORF8	64	E64X	Gag	Tag	1	1	B.1.1.277	0.000759
ORF8	64	E64D	gaG	gaT	1	1	B.1.1.277	0.000759
ORF8	64	E64K	Gag	Aag	1	1	B.1.1.28	0.000311
ORF8	64	E64M	GAg	ATg	1	1	B.1.1.28	0.000311
ORF8	64	E64L	GAg	TTg	1	1	B.1.1.28	0.000311
ORF8	64	E64A	gAg	gCg	1	1	B.1.1.282	0.011628
ORF8	64	E64A	gAg	gCg	1	1	B.1.1.284	0.000107
ORF8	64	E64D	gaG	gaT	1	1	B.1.1.284	0.000107
ORF8	64	E64X	Gag	Tag	1	1	B.1.1.294	0.001266
ORF8	64	E64D	gaG	gaT	1	1	B.1.1.316	0.000925
ORF8	64	E64X	Gag	Tag	1	1	B.1.1.317	0.000412
ORF8	64	E64X	Gag	Tag	1	1	B.1.1.318	0.000302
ORF8	64	E64del	GAG	---	1	1	B.1.1.322	0.008772
ORF8	64	E64del	GAG	---	1	1	B.1.1.354	0.004386
ORF8	64	E64K	Gag	Aag	1	1	B.1.1.355	0.015385
ORF8	64	E64X	Gag	Tag	1	1	B.1.1.369	0.000446
ORF8	64	E64D	gaG	gaT	1	1	B.1.1.37	0.000193
ORF8	64	E64del	GAG	---	1	1	B.1.1.37	0.000193
ORF8	64	E64D	gaG	gaT	1	1	B.1.1.372	0.000689
ORF8	64	E64X	Gag	Tag	1	1	B.1.1.39	0.00051
ORF8	64	E64D	gaG	gaT	1	1	B.1.1.411	0.014706
ORF8	64	E64D	gaG	gaT	1	1	B.1.1.416	0.000905
ORF8	64	E64D	gaG	gaT	1	1	B.1.1.450	0.034483
ORF8	64	E64D	gaG	gaT	1	1	B.1.1.462	0.008621
ORF8	64	E64E	gaG	gaA	1	1	B.1.1.519	0.00004
ORF8	64	E64del	GAG	---	1	1	B.1.1.63	0.000386
ORF8	64	E64del2	gAG	g--	1	1	B.1.1.7	0.000001
ORF8	64	E64E	gaG	gaA	1	1	B.1.108	0.005814
ORF8	64	E64G	gAg	gGg	1	1	B.1.111	0.001175
ORF8	64	E64del	GAG	---	1	1	B.1.126	0.001276
ORF8	64	E64Q	Gag	Cag	1	1	B.1.139	0.000733
ORF8	64	E64G	gAg	gGg	1	1	B.1.139	0.000733
ORF8	64	E64X	Gag	Tag	1	1	B.1.147	0.000756
ORF8	64	E64K	Gag	Aag	1	1	B.1.160	0.000031
ORF8	64	E64X	Gag	Tag	1	1	B.1.160.31	0.008065
ORF8	64	E64E	gaG	gaA	1	1	B.1.177	0.000013
ORF8	64	E64G	gAg	gGg	1	1	B.1.177.10	0.000878
ORF8	64	E64G	gAg	gGg	1	1	B.1.177.15	0.000631
ORF8	64	E64X	Gag	Tag	1	1	B.1.177.15	0.000631
ORF8	64	E64G	gAg	gGg	1	1	B.1.177.16	0.000664
ORF8	64	E64del	GAG	---	1	1	B.1.177.17	0.000821
ORF8	64	E64del	GAG	---	1	1	B.1.177.21	0.000076
ORF8	64	E64D	gaG	gaT	1	1	B.1.177.35	0.000691
ORF8	64	E64D	gaG	gaT	1	1	B.1.177.4	0.000211
ORF8	64	E64G	gAg	gGg	1	1	B.1.177.4	0.000211
ORF8	64	E64X	Gag	Tag	1	1	B.1.177.42	0.000894
ORF8	64	E64D	gaG	gaT	1	1	B.1.177.54	0.000606
ORF8	64	E64D	gaG	gaT	1	1	B.1.177.57	0.000281
ORF8	64	E64D	gaG	gaT	1	1	B.1.177.62	0.001192
ORF8	64	E64del	GAG	---	1	1	B.1.177.63	0.002703
ORF8	64	E64del	GAG	---	1	1	B.1.177.7	0.000165
ORF8	64	E64E	gaG	gaA	1	1	B.1.177.73	0.000566
ORF8	64	E64X	Gag	Tag	1	1	B.1.177.73	0.000566
ORF8	64	E64D	gaG	gaT	1	1	B.1.177.81	0.000189
ORF8	64	E64del	GAG	---	1	1	B.1.177.83	0.001481
ORF8	64	E64D	gaG	gaT	1	1	B.1.177.87	0.000728
ORF8	64	E64X	Gag	Tag	1	1	B.1.177.9	0.001332
ORF8	64	E64del	GAG	---	1	1	B.1.195	0.005025
ORF8	64	E64X	Gag	Tag	1	1	B.1.214.2	0.0006
ORF8	64	E64X	Gag	Tag	1	1	B.1.221	0.000071
ORF8	64	E64D	gaG	gaT	1	1	B.1.240	0.000216
ORF8	64	E64V	gAg	gTg	1	1	B.1.243	0.00007
ORF8	64	E64Y	GaG	TaC	1	1	B.1.243	0.00007
ORF8	64	E64X	Gag	Tag	1	1	B.1.243	0.00007
ORF8	64	E64E	gaG	gaA	1	1	B.1.258	0.000067
ORF8	64	E64G	gAg	gGg	1	1	B.1.258	0.000067
ORF8	64	E64del2	GAg	--g	1	1	B.1.258	0.000067
ORF8	64	E64X	Gag	Tag	1	1	B.1.258.11	0.000396
ORF8	64	E64del	GAG	---	1	1	B.1.258.12	0.007874
ORF8	64	E64del2	GAg	--g	1	1	B.1.258.17	0.000104
ORF8	64	E64E	gaG	gaA	1	1	B.1.258.3	0.001675
ORF8	64	E64A	gAg	gCg	1	1	B.1.311	0.000275
ORF8	64	E64E	gaG	gaA	1	1	B.1.349	0.000715
ORF8	64	E64del	GAG	---	1	1	B.1.35	0.008475
ORF8	64	E64Q	Gag	Cag	1	1	B.1.351	0.00003
ORF8	64	E64X	Gag	Tag	1	1	B.1.351	0.00003
ORF8	64	E64del	GAG	---	1	1	B.1.351.2	0.000303
ORF8	64	E64del	GAG	---	1	1	B.1.36	0.000146
ORF8	64	E64G	gAG	gGA	1	1	B.1.36	0.000146
ORF8	64	E64X	Gag	Tag	1	1	B.1.36.1	0.00114
ORF8	64	E64X	Gag	Tag	1	1	B.1.36.10	0.004785
ORF8	64	E64G	gAG	gGT	1	1	B.1.36.29	0.000517
ORF8	64	E64D	gaG	gaT	1	1	B.1.36.31	0.001751
ORF8	64	E64D	gaG	gaT	1	1	B.1.36.8	0.001
ORF8	64	E64del1	Gag	-ag	1	1	B.1.36.8	0.001
ORF8	64	E64D	gaG	gaT	1	1	B.1.361	0.001289
ORF8	64	E64D	gaG	gaC	1	1	B.1.369	0.000285
ORF8	64	E64del	GAG	---	1	1	B.1.369	0.000285
ORF8	64	E64Q	Gag	Cag	1	1	B.1.369	0.000285
ORF8	64	E64D	gaG	gaT	1	1	B.1.375	0.00082
ORF8	64	E64G	gAg	gGg	1	1	B.1.396	0.000706
ORF8	64	E64X	Gag	Tag	1	1	B.1.411	0.003704
ORF8	64	E64V	gAg	gTg	1	1	B.1.427	0.00005
ORF8	64	E64E	gaG	gaA	1	1	B.1.429	0.000024
ORF8	64	E64D	gaG	gaT	1	1	B.1.436	0.001029
ORF8	64	E64X	Gag	Tag	1	1	B.1.438	0.006536
ORF8	64	E64D	gaG	gaT	1	1	B.1.441	0.009615
ORF8	64	E64X	Gag	Tag	1	1	B.1.466.2	0.000391
ORF8	64	E64del1	Gag	-ag	1	1	B.1.468	0.005714
ORF8	64	E64del	GAG	---	1	1	B.1.517	0.000427
ORF8	64	E64D	gaG	gaT	1	1	B.1.521	0.004975
ORF8	64	E64G	gAg	gGg	1	1	B.1.526	0.000024
ORF8	64	E64del	GAG	---	1	1	B.1.540	0.009709
ORF8	64	E64E	gaG	gaA	1	1	B.1.546	0.003704
ORF8	64	E64del	GAG	---	1	1	B.1.549	0.007194
ORF8	64	E64K	Gag	Aag	1	1	B.1.558	0.004566
ORF8	64	E64X	Gag	Tag	1	1	B.1.560	0.00463
ORF8	64	E64D	gaG	gaT	1	1	B.1.564	0.000426
ORF8	64	E64V	gAg	gTg	1	1	B.1.570	0.002941
ORF8	64	E64E	gaG	gaA	1	1	B.1.575	0.000303
ORF8	64	E64X	Gag	Tag	1	1	B.1.579	0.011236
ORF8	64	E64K	Gag	Aag	1	1	B.1.595	0.000261
ORF8	64	E64del1	gaG	ga-	1	1	B.1.596	0.000087
ORF8	64	E64A	gAg	gCg	1	1	B.1.596	0.000087
ORF8	64	E64D	gaG	gaT	1	1	B.1.596	0.000087
ORF8	64	E64del	GAG	---	1	1	B.1.597	0.00463
ORF8	64	E64X	Gag	Tag	1	1	B.1.599	0.00365
ORF8	64	E64D	gaG	gaT	1	1	B.1.617.1	0.000129
ORF8	64	E64X	Gag	Tag	1	1	B.1.617.1	0.000129
ORF8	64	E64G	gAg	gGg	1	1	B.1.620	0.000946
ORF8	64	E64del	GAG	---	1	1	B.1.621	0.000089
ORF8	64	E64V	gAg	gTg	1	1	B.1.621.1	0.000506
ORF8	64	E64G	gAg	gGg	1	1	B.1.637	0.000073
ORF8	64	E64del	GAG	---	1	1	B.34	0.013699
ORF8	64	E64D	gaG	gaT	1	1	B.4.7	0.010101
ORF8	64	E64del	GAG	---	1	1	B.40	0.000364
ORF8	64	E64del1	Gag	-ag	1	1	B.40	0.000364
ORF8	64	E64X	Gag	Tag	1	1	C.17	0.055556
ORF8	64	E64D	gaG	gaT	1	1	C.2.1	0.006667
ORF8	64	E64X	Gag	Tag	1	1	C.2.1	0.006667
ORF8	64	E64del	GAG	---	1	1	C.26	0.007353
ORF8	64	E64del	GAG	---	1	1	C.36	0.000911
ORF8	64	E64D	gaG	gaT	1	1	C.36	0.000911
ORF8	64	E64X	Gag	Tag	1	1	C.37.1	0.002618
ORF8	64	E64del	GAG	---	1	1	M.3	0.076923
ORF8	64	E64del	GAG	---	1	1	N.6	0.007092
ORF8	64	E64del2	GAG	--T	1	1	P.1	0.000016
ORF8	64	E64F	GAG	TTT	1	1	P.1	0.000016
ORF8	64	E64V	gAg	gTg	1	1	P.1.14	0.000048
ORF8	64	E64G	gAg	gGg	1	1	P.1.14	0.000048
ORF8	64	E64D	gaG	gaT	1	1	P.1.16	0.000374
ORF8	64	E64X	Gag	Tag	1	1	P.1.16	0.000374
ORF8	64	E64E	gaG	gaA	1	1	P.1.17	0.000162
ORF8	64	E64A	gAg	gCg	1	1	P.1.17	0.000162
ORF8	64	E64D	gaG	gaT	1	1	P.1.7	0.000319
ORF8	64	E64del	GAG	---	1	1	P.1.8	0.004785
ORF8	64	E64Y	GaG	TaT	1	1	P.2	0.000187
ORF8	64	E64V	gAg	gTg	1	1	P.3	0.001595
ORF8	64	E64X	Gag	Tag	1	1	P.4	0.003802
ORF8	64	E64del	GAG	---	1	1	Q.3	0.000145
ORF8	64	E64G	gAg	gGg	1	1	Q.3	0.000145
ORF8	64	E64del	GAG	---	1	1	Q.4	0.000455
ORF8	64	E64X	Gag	Tag	1	1	Q.4	0.000455
ORF8	64	E64del	GAG	---	1	1	Q.7	0.001111
ORF8	64	E64V	gAg	gTg	1	1	Q.8	0.000165
ORF8	64	E64X	Gag	Tag	1	1	R.1	0.00009
ORF8	64	E64del	GAG	---	1	1	R.1	0.00009
ORF8	64	E64D	gaG	gaT	1	1	R.1	0.00009
ORF8	64	E64V	gAg	gTg	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.