CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 59

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF859E59XnonsynGaaTaa195519540.99948828068-28070
ORF859E59XnonsynGaATaG195510.00051150928068-28070
ORF859E59deldelGAA---12321232128068-28070
ORF859E59DnonsyngaAgaC5343040.56928828068-28070
ORF859E59DnonsyngaAgaT5342300.43071228068-28070
ORF859E59del1delGaa-aa5305280.99622628068-28070
ORF859E59del1delgaAga-53010.0018867928068-28070
ORF859E59del1delgAag-a53010.0018867928068-28070
ORF859E59EsyngaAgaG208208128068-28070
ORF859E59GnonsyngAagGa1951720.88205128068-28070
ORF859E59GnonsyngAAgGG195190.097435928068-28070
ORF859E59GnonsyngAAgGC19530.015384628068-28070
ORF859E59GnonsyngAAgGT19510.0051282128068-28070
ORF859E59KnonsynGaaAaa171171128068-28070
ORF859E59QnonsynGaaCaa1071040.97196328068-28070
ORF859E59QnonsynGaACaG10730.028037428068-28070
ORF859E59AnonsyngAagCa77750.97402628068-28070
ORF859E59AnonsyngAAgCC7720.02597428068-28070
ORF859E59VnonsyngAagTa49410.83673528068-28070
ORF859E59VnonsyngAAgTC4940.081632728068-28070
ORF859E59VnonsyngAAgTG4930.061224528068-28070
ORF859E59VnonsyngAAgTT4910.020408228068-28070
ORF859E59del2delgAAg--19170.89473728068-28070
ORF859E59del2delGAa--a1920.10526328068-28070
ORF859E59RnonsynGAACGG14100.71428628068-28070
ORF859E59RnonsynGAaCGa1420.14285728068-28070
ORF859E59RnonsynGAACGC1420.14285728068-28070
ORF859E59HnonsynGaACaC870.87528068-28070
ORF859E59HnonsynGaACaT810.12528068-28070
ORF859E59PnonsynGAaCCa530.628068-28070
ORF859E59PnonsynGAACCC520.428068-28070
ORF859E59LnonsynGAATTG410.2528068-28070
ORF859E59LnonsynGAaTTa410.2528068-28070
ORF859E59LnonsynGAACTT410.2528068-28070
ORF859E59LnonsynGAACTC410.2528068-28070
ORF859E59TnonsynGAaACa11128068-28070
ORF859E59MnonsynGAAATG11128068-28070

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF859E59XGaaTaa19541955All0.000374
ORF859E59XGaATaG11955All0
ORF859E59delGAA---12321232All0.000236
ORF859E59DgaAgaC304534All0.000058
ORF859E59DgaAgaT230534All0.000044
ORF859E59del1Gaa-aa528530All0.000101
ORF859E59del1gaAga-1530All0
ORF859E59del1gAag-a1530All0
ORF859E59XGaaTaa504504AY.40.000784
ORF859E59del1Gaa-aa393393B.1.1.70.000352
ORF859E59delGAA---372372B.1.1.70.000333
ORF859E59EgaAgaG208208All0.00004
ORF859E59XGaaTaa199199B.1.1.70.000178
ORF859E59GgAagGa172195All0.000033
ORF859E59GgAAgGG19195All0.000004
ORF859E59GgAAgGC3195All0.000001
ORF859E59GgAAgGT1195All0
ORF859E59KGaaAaa171171All0.000033
ORF859E59DgaAgaT165165AY.250.000992
ORF859E59XGaaTaa156156B.1.177.860.028619
ORF859E59XGaaTaa149149B.1.1.370.028737
ORF859E59QGaaCaa104107All0.00002
ORF859E59QGaACaG3107All0.000001
ORF859E59DgaAgaC7098AY.40.000109
ORF859E59DgaAgaT2898AY.40.000044
ORF859E59delGAA---8686AY.440.000523
ORF859E59XGaaTaa8282B.10.000751
ORF859E59XGaaTaa8080AY.290.001262
ORF859E59GgAagGa7780B.1.1.70.000069
ORF859E59GgAAgGG380B.1.1.70.000003
ORF859E59AgAagCa7577All0.000014
ORF859E59AgAAgCC277All0
ORF859E59del1Gaa-aa7171AY.250.000427
ORF859E59DgaAgaC6969AY.46.40.011351
ORF859E59delGAA---6868AY.40.000106
ORF859E59delGAA---6666AY.1030.00041
ORF859E59DgaAgaC6060AY.1020.001591
ORF859E59XGaaTaa5959AY.9.20.002167
ORF859E59delGAA---5858B.1.1.2940.073418
ORF859E59XGaaTaa5454B.1.10.00098
ORF859E59QGaaCaa5050AY.440.000304
ORF859E59VgAagTa4149All0.000008
ORF859E59VgAAgTC449All0.000001
ORF859E59VgAAgTG349All0.000001
ORF859E59VgAAgTT149All0
ORF859E59delGAA---4545B.1.3510.001338
ORF859E59XGaaTaa4545B.1.617.20.000169
ORF859E59XGaaTaa3939B.1.1.5190.001549
ORF859E59KGaaAaa3939B.1.1.70.000035
ORF859E59delGAA---3838AY.290.000599
ORF859E59XGaaTaa3838AY.440.000231
ORF859E59delGAA---3737B.1.10.000671
ORF859E59delGAA---3434B.1.1.2220.006936
ORF859E59delGAA---3434B.1.2430.002366
ORF859E59XGaaTaa3434B.1.2890.090426
ORF859E59KGaaAaa3232AY.40.00005
ORF859E59XGaaTaa3131B.1.1.3520.96875
ORF859E59del1Gaa-aa3030AY.440.000183
ORF859E59EgaAgaG3030B.1.1.3170.012351
ORF859E59delGAA---3030B.1.1600.000936
ORF859E59XGaaTaa2828AY.1030.000174
ORF859E59XGaaTaa2828AY.430.000124
ORF859E59DgaAgaC1428B.1.1.70.000013
ORF859E59DgaAgaT1428B.1.1.70.000013
ORF859E59XGaaTaa2828B.1.1700.12069
ORF859E59EgaAgaG2727B.1.1.70.000024
ORF859E59KGaaAaa2424B.1.1.500.016293
ORF859E59XGaaTaa2222AY.9.10.001842
ORF859E59KGaaAaa2121AY.250.000126
ORF859E59delGAA---2121P.10.000331
ORF859E59KGaaAaa2020AY.1030.000124
ORF859E59XGaaTaa2020B.1.1.3370.071942
ORF859E59XGaaTaa2020B.1.1600.000624
ORF859E59del2gAAg--1719All0.000003
ORF859E59del2GAa--a219All0
ORF859E59delGAA---1919B0.002428
ORF859E59delGAA---1818AY.1180.001128
ORF859E59XGaaTaa1818B.1.1.4470.642857
ORF859E59delGAA---1717AY.30.000169
ORF859E59EgaAgaG1717AY.430.000075
ORF859E59delGAA---1717B.1.617.20.000064
ORF859E59DgaAgaC1517P.10.000236
ORF859E59DgaAgaT217P.10.000032
ORF859E59EgaAgaG1616B.1.1770.000211
ORF859E59RGAACGG1014All0.000002
ORF859E59RGAaCGa214All0
ORF859E59RGAACGC214All0
ORF859E59del2gAAg--1414B.1.1.70.000013
ORF859E59DgaAgaC1114B.1.617.20.000041
ORF859E59DgaAgaT314B.1.617.20.000011
ORF859E59XGaaTaa1414N.50.024735
ORF859E59DgaAgaC1213AY.30.000119
ORF859E59DgaAgaT113AY.30.00001
ORF859E59XGaaTaa1313B.1.1.2220.002652
ORF859E59GgAagGa1313B.1.617.20.000049
ORF859E59EgaAgaG1313B.1.617.20.000049
ORF859E59GgAAgGG1212AY.940.005312
ORF859E59del1Gaa-aa1212B.1.20.000106
ORF859E59delGAA---1212B.1.20.000106
ORF859E59XGaaTaa1111AY.250.000066
ORF859E59GgAagGa1111B.10.000101
ORF859E59delGAA---1111B.1.1.3180.003319
ORF859E59XGaaTaa1111B.1.621.10.005564
ORF859E59XGaaTaa1111P.10.000173
ORF859E59GgAagGa1010AY.230.000697
ORF859E59GgAagGa1010B.1.10.000181
ORF859E59VgAagTa1010B.1.1.70.000009
ORF859E59AgAagCa1010B.1.20.000088
ORF859E59EgaAgaG99AY.1020.000239
ORF859E59delGAA---99AY.1130.001282
ORF859E59XGaaTaa99AY.1210.001218
ORF859E59AgAagCa99AY.40.000014
ORF859E59delGAA---99B.1.1770.000119
ORF859E59XGaaTaa99B.1.5170.003843
ORF859E59HGaACaC78All0.000001
ORF859E59HGaACaT18All0
ORF859E59GgAagGa88AY.1200.000297
ORF859E59XGaaTaa88AY.98.10.000387
ORF859E59DgaAgaC78B.10.000064
ORF859E59DgaAgaT18B.10.000009
ORF859E59delGAA---88B.1.1.2840.000859
ORF859E59QGaaCaa68P.10.000095
ORF859E59QGaACaG28P.10.000032
ORF859E59AgAagCa88P.1.140.000382
ORF859E59delGAA---77AY.1190.000247
ORF859E59delGAA---77AY.250.000042
ORF859E59EgaAgaG77AY.40.000011
ORF859E59AgAagCa77AY.9.20.000257
ORF859E59delGAA---77B.10.000064
ORF859E59delGAA---77B.1.1.2650.022082
ORF859E59XGaaTaa77B.1.1.630.002701
ORF859E59QGaaCaa77B.1.1.70.000006
ORF859E59XGaaTaa77B.1.20.000062
ORF859E59delGAA---77B.1.36.160.009972
ORF859E59EgaAgaG77B.1.4270.000353
ORF859E59XGaaTaa77B.1.466.20.002739
ORF859E59delGAA---77B.1.6280.002467
ORF859E59EgaAgaG77P.10.00011
ORF859E59HGaACaC67P.10.000095
ORF859E59HGaACaT17P.10.000016
ORF859E59delGAA---77P.1.140.000335
ORF859E59delGAA---660.333333
ORF859E59XGaaTaa66AY.1160.001721
ORF859E59del1Gaa-aa66AY.200.000233
ORF859E59GgAagGa66AY.40.000009
ORF859E59EgaAgaG66B.1.1.1410.012072
ORF859E59delGAA---66B.1.1.5190.000238
ORF859E59EgaAgaG66B.1.2360.01232
ORF859E59delGAA---66B.1.243.20.086957
ORF859E59delGAA---66P.1.170.000971
ORF859E59PGAaCCa35All0.000001
ORF859E59PGAACCC25All0
ORF859E59AgAagCa55AY.1030.000031
ORF859E59XGaaTaa55AY.1190.000177
ORF859E59delGAA---55AY.29.10.001103
ORF859E59delGAA---55AY.390.000124
ORF859E59XGaaTaa55AY.470.000156
ORF859E59XGaaTaa55AY.530.001438
ORF859E59EgaAgaG55AY.590.002648
ORF859E59XGaaTaa55AY.980.000395
ORF859E59DgaAgaC45B.1.10.000073
ORF859E59DgaAgaT15B.1.10.000018
ORF859E59XGaaTaa55B.1.1.3120.00956
ORF859E59DgaAgaC55B.1.1.5190.000199
ORF859E59DgaAgaT45B.1.1770.000053
ORF859E59DgaAgaC15B.1.1770.000013
ORF859E59delGAA---55B.1.2400.001078
ORF859E59XGaaTaa55B.1.5260.000118
ORF859E59XGaaTaa55B.1.5950.001305
ORF859E59delGAA---55C.370.00058
ORF859E59XGaaTaa55C.370.00058
ORF859E59GgAAgGC25P.10.000032
ORF859E59GgAagGa25P.10.000032
ORF859E59RGAACGC25P.10.000032
ORF859E59RGAaCGa25P.10.000032
ORF859E59GgAAgGG15P.10.000016
ORF859E59RGAACGG15P.10.000016
ORF859E59delGAA---55P.1.10.001588
ORF859E59LGAACTT14All0
ORF859E59LGAACTC14All0
ORF859E59LGAaTTa14All0
ORF859E59LGAATTG14All0
ORF859E59DgaAgaC44AY.1200.000149
ORF859E59EgaAgaG44AY.200.000155
ORF859E59XGaaTaa44AY.230.000279
ORF859E59GgAagGa44AY.30.00004
ORF859E59VgAAgTC24AY.30.00002
ORF859E59VgAagTa24AY.30.00002
ORF859E59XGaaTaa44AY.3.10.000341
ORF859E59XGaaTaa44AY.330.000267
ORF859E59DgaAgaC44AY.39.10.000158
ORF859E59delGAA---44AY.4.20.000087
ORF859E59VgAagTa34AY.430.000013
ORF859E59GgAagGa34AY.430.000013
ORF859E59GgAAgGC14AY.430.000004
ORF859E59VgAAgTG14AY.430.000004
ORF859E59XGaaTaa44AY.460.000416
ORF859E59EgaAgaG44AY.46.60.000289
ORF859E59delGAA---44AY.7.20.002237
ORF859E59AgAagCa44AY.750.000224
ORF859E59AgAagCa44AZ.20.003284
ORF859E59delGAA---44B.1.1.2140.000222
ORF859E59QGaaCaa44B.1.1.2190.02
ORF859E59RGAACGG44B.1.1.70.000004
ORF859E59EgaAgaG44B.1.1600.000125
ORF859E59delGAA---44B.1.177.800.007648
ORF859E59EgaAgaG44B.1.177.810.000757
ORF859E59delGAA---44B.1.2580.000266
ORF859E59delGAA---44B.1.4290.000094
ORF859E59XGaaTaa44B.1.5250.000453
ORF859E59del1Gaa-aa44B.1.617.20.000015
ORF859E59KGaaAaa44D.20.0003
ORF859E59del1Gaa-aa44Q.80.00066
ORF859E59DgaAgaC33AY.1030.000019
ORF859E59XGaaTaa33AY.1110.000549
ORF859E59XGaaTaa33AY.1170.000254
ORF859E59QGaaCaa33AY.1170.000254
ORF859E59delGAA---33AY.260.000085
ORF859E59XGaaTaa33AY.30.00003
ORF859E59KGaaAaa33AY.30.00003
ORF859E59GgAagGa33AY.390.000074
ORF859E59DgaAgaC23AY.390.000049
ORF859E59DgaAgaT13AY.390.000025
ORF859E59QGaaCaa33AY.40.000005
ORF859E59DgaAgaC23AY.4.20.000043
ORF859E59DgaAgaT13AY.4.20.000022
ORF859E59GgAagGa33AY.610.000314
ORF859E59XGaaTaa33AY.750.000168
ORF859E59DgaAgaT33AY.850.001282
ORF859E59EgaAgaG33AY.980.000237
ORF859E59XGaaTaa33AZ.30.004559
ORF859E59EgaAgaG33B.10.000027
ORF859E59EgaAgaG33B.1.10.000054
ORF859E59KGaaAaa33B.1.10.000054
ORF859E59XGaaTaa33B.1.1.2140.000166
ORF859E59XGaaTaa33B.1.1.2910.002227
ORF859E59QGaaCaa33B.1.1.4070.125
ORF859E59AgAagCa33B.1.1.70.000003
ORF859E59XGaaTaa33B.1.1770.00004
ORF859E59EgaAgaG33B.1.214.20.001799
ORF859E59delGAA---33B.1.220.003953
ORF859E59XGaaTaa33B.1.2430.000209
ORF859E59VgAagTa33B.1.258.210.023256
ORF859E59delGAA---33B.1.438.10.000322
ORF859E59delGAA---33B.1.5090.002597
ORF859E59GgAagGa33B.1.5260.000071
ORF859E59AgAagCa33B.1.5260.000071
ORF859E59QGaaCaa33B.1.617.20.000011
ORF859E59AgAagCa33B.1.617.20.000011
ORF859E59XGaaTaa33B.1.9.50.017045
ORF859E59delGAA---33P.1.150.000697
ORF859E59XGaaTaa33P.1.70.000958
ORF859E59XGaaTaa33P.20.00056
ORF859E59delGAA---33Q.80.000495
ORF859E59DgaAgaC220.111111
ORF859E59GgAagGa22A0.000774
ORF859E59GgAagGa22AY.10.000791
ORF859E59XGaaTaa22AY.1000.000092
ORF859E59XGaaTaa22AY.1020.000053
ORF859E59QGaaCaa22AY.1020.000053
ORF859E59delGAA---22AY.1020.000053
ORF859E59XGaaTaa22AY.1060.00067
ORF859E59LGAaTTa12AY.1130.000142
ORF859E59VgAAgTG12AY.1130.000142
ORF859E59VgAagTa12AY.1130.000142
ORF859E59LGAATTG12AY.1130.000142
ORF859E59XGaATaG12AY.1130.000142
ORF859E59XGaaTaa12AY.1130.000142
ORF859E59EgaAgaG22AY.1160.000574
ORF859E59GgAagGa22AY.130.000322
ORF859E59XGaaTaa22AY.190.002281
ORF859E59XGaaTaa22AY.200.000078
ORF859E59VgAagTa22AY.200.000078
ORF859E59EgaAgaG22AY.230.000139
ORF859E59delGAA---22AY.230.000139
ORF859E59EgaAgaG22AY.250.000012
ORF859E59QGaaCaa22AY.250.000012
ORF859E59VgAagTa22AY.250.000012
ORF859E59AgAagCa22AY.250.000012
ORF859E59GgAagGa22AY.260.000057
ORF859E59GgAagGa22AY.290.000032
ORF859E59XGaaTaa22AY.390.000049
ORF859E59delGAA---22AY.39.10.000079
ORF859E59VgAagTa22AY.40.000003
ORF859E59AgAagCa22AY.4.20.000043
ORF859E59AgAagCa22AY.430.000009
ORF859E59DgaAgaC22AY.430.000009
ORF859E59RGAACGG22AY.430.000009
ORF859E59delGAA---22AY.430.000009
ORF859E59VgAagTa22AY.440.000012
ORF859E59EgaAgaG22AY.440.000012
ORF859E59AgAagCa22AY.440.000012
ORF859E59KGaaAaa22AY.440.000012
ORF859E59DgaAgaT12AY.440.000006
ORF859E59DgaAgaC12AY.440.000006
ORF859E59XGaaTaa22AY.450.000243
ORF859E59delGAA---22AY.470.000062
ORF859E59delGAA---22AY.480.00093
ORF859E59GgAagGa22AY.60.000082
ORF859E59XGaaTaa22AY.610.00021
ORF859E59XGaaTaa22AY.650.001066
ORF859E59delGAA---22AY.840.000875
ORF859E59XGaaTaa22AY.920.000575
ORF859E59delGAA---22AY.98.10.000097
ORF859E59XGaaTaa22AZ.10.001735
ORF859E59XGaaTaa22B0.000256
ORF859E59KGaaAaa22B.10.000018
ORF859E59VgAagTa22B.10.000018
ORF859E59XGaaTaa22B.1.1.2160.001781
ORF859E59KGaaAaa22B.1.1.250.001137
ORF859E59XGaaTaa22B.1.1.3260.003521
ORF859E59XGaaTaa22B.1.1.4090.005666
ORF859E59XGaaTaa22B.1.1.500.001358
ORF859E59XGaaTaa22B.1.177.430.002954
ORF859E59EgaAgaG22B.1.20.000018
ORF859E59delGAA---22B.1.2100.004264
ORF859E59XGaaTaa22B.1.2100.004264
ORF859E59delGAA---22B.1.2340.000264
ORF859E59XGaaTaa22B.1.2580.000133
ORF859E59delGAA---22B.1.258.170.000208
ORF859E59XGaaTaa22B.1.3510.000059
ORF859E59QGaACaG12B.1.3510.00003
ORF859E59QGaaCaa12B.1.3510.00003
ORF859E59delGAA---22B.1.360.000292
ORF859E59KGaaAaa22B.1.36.80.002
ORF859E59QGaaCaa22B.1.3750.001639
ORF859E59delGAA---22B.1.4270.000101
ORF859E59DgaAgaC22B.1.4970.00063
ORF859E59delGAA---22B.1.5260.000047
ORF859E59XGaaTaa22B.1.6090.000959
ORF859E59XGaaTaa22B.1.617.10.000258
ORF859E59XGaaTaa22B.1.6210.000177
ORF859E59del2GAa--a22B.1.6370.000146
ORF859E59EgaAgaG22B.1.9.50.011364
ORF859E59delGAA---22B.400.000729
ORF859E59XGaaTaa22B.60.00182
ORF859E59XGaaTaa22C.360.001821
ORF859E59KGaaAaa22C.370.000232
ORF859E59KGaaAaa22P.10.000032
ORF859E59LGAACTT12P.10.000016
ORF859E59LGAACTC12P.10.000016
ORF859E59VgAAgTC12P.10.000016
ORF859E59VgAAgTT12P.10.000016
ORF859E59AgAAgCC12P.10.000016
ORF859E59AgAagCa12P.10.000016
ORF859E59PGAACCC12P.10.000016
ORF859E59PGAaCCa12P.10.000016
ORF859E59delGAA---22P.1.120.000968
ORF859E59delGAA---22P.1.70.000639
ORF859E59AgAAgCC12P.20.000187
ORF859E59PGAaCCa12P.20.000187
ORF859E59AgAagCa12P.20.000187
ORF859E59PGAACCC12P.20.000187
ORF859E59XGaaTaa11A0.000387
ORF859E59XGaaTaa11A.10.000282
ORF859E59VgAagTa11A.2.50.000499
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