CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 54 & Codon = tTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF854S54LnonsyntCatTa755075490.99986828053-28055

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF854S54LtCatTa75497550All0.001444
ORF854S54LtCatTa13771377B.1.1.70.001233
ORF854S54LtCatTa775775AY.40.001206
ORF854S54LtCatTa725725B.1.617.20.00273
ORF854S54LtCatTa595596AY.430.002636
ORF854S54LtCatTa358358AY.50.007392
ORF854S54LtCatTa309309AY.30.003073
ORF854S54LtCatTa231231AY.340.022399
ORF854S54LtCatTa227227AY.1030.001409
ORF854S54LtCatTa203203AY.250.001221
ORF854S54LtCatTa165165B.1.1.2840.017721
ORF854S54LtCatTa155155AY.39.10.00614
ORF854S54LtCatTa146146B.1.20.001286
ORF854S54LtCatTa134134B.1.5770.092096
ORF854S54LtCatTa133133P.10.002095
ORF854S54LtCatTa101101B.1.1.5190.004011
ORF854S54LtCatTa8989AY.440.000542
ORF854S54LtCatTa7878B.1.5260.001833
ORF854S54LtCatTa6161AY.1000.002806
ORF854S54LtCatTa6161B.10.000559
ORF854S54LtCatTa5656AY.1020.001485
ORF854S54LtCatTa5252P.20.009705
ORF854S54LtCatTa5151B.1.3510.001516
ORF854S54LtCatTa5151B.1.4290.0012
ORF854S54LtCatTa5050B.1.177.620.059595
ORF854S54LtCatTa4949B.1.177.600.010703
ORF854S54LtCatTa4848AY.290.000757
ORF854S54LtCatTa4646AY.4.20.000998
ORF854S54LtCatTa4646Q.40.020919
ORF854S54LtCatTa4242B.1.1770.000553
ORF854S54LtCatTa4040B.1.1.500.027155
ORF854S54LtCatTa3737AY.470.001151
ORF854S54LtCatTa3333AY.200.001283
ORF854S54LtCatTa3333B.1.160.130.916667
ORF854S54LtCatTa3131AY.330.00207
ORF854S54LtCatTa3131B.1.360.004523
ORF854S54LtCatTa3030B.1.5760.027199
ORF854S54LtCatTa2929B.1.110.30.020833
ORF854S54LtCatTa2626AY.1170.002197
ORF854S54LtCatTa2626AY.390.000642
ORF854S54LtCatTa2626AY.46.40.004277
ORF854S54LtCatTa2626B.1.2430.001809
ORF854S54LtCatTa2525B.1.10.000454
ORF854S54LtCatTa2222AY.1190.000777
ORF854S54LtCatTa2121AY.46.60.001516
ORF854S54LtCatTa1717AY.1100.001916
ORF854S54LtCatTa1717AY.1200.000632
ORF854S54LtCatTa1515B.1.1600.000468
ORF854S54LtCatTa1313AY.270.000841
ORF854S54LtCatTa1313P.1.170.002103
ORF854S54LtCatTa1212B.1.1.2220.002448
ORF854S54LtCatTa1212B.1.177.330.019737
ORF854S54LtCatTa1212B.1.2210.000852
ORF854S54LtCatTa1212B.1.6370.000877
ORF854S54LtCatTa1212P.1.140.000574
ORF854S54LtCatTa1111AY.260.000311
ORF854S54LtCatTa1111AY.3.10.000938
ORF854S54LtCatTa1111AY.740.001272
ORF854S54LtCatTa1111B.1.2400.002371
ORF854S54LtCatTa1111B.1.5950.002871
ORF854S54LtCatTa1111C.370.001277
ORF854S54LtCatTa1010AY.230.000697
ORF854S54LtCatTa1010AY.670.004643
ORF854S54LtCatTa99AY.99.20.000829
ORF854S54LtCatTa99B.1.1.700.00307
ORF854S54LtCatTa88AY.1160.002294
ORF854S54LtCatTa88AY.450.000973
ORF854S54LtCatTa88AY.840.0035
ORF854S54LtCatTa88B.1.2180.041237
ORF854S54LtCatTa88B.1.6210.000708
ORF854S54LtCatTa77AY.1180.000439
ORF854S54LtCatTa77AY.4.50.000752
ORF854S54LtCatTa77AY.9.20.000257
ORF854S54LtCatTa77B.1.1.1700.008728
ORF854S54LtCatTa77B.1.4000.003003
ORF854S54LtCatTa77B.1.5410.030973
ORF854S54LtCatTa66A.2.50.002994
ORF854S54LtCatTa66AY.370.001896
ORF854S54LtCatTa66AY.460.000624
ORF854S54LtCatTa66AY.980.000474
ORF854S54LtCatTa66AY.98.10.000291
ORF854S54LtCatTa66B.1.1.4260.214286
ORF854S54LtCatTa66B.1.177.560.004005
ORF854S54LtCatTa66B.1.177.810.001136
ORF854S54LtCatTa66B.1.2580.000399
ORF854S54LtCatTa66B.1.3690.001711
ORF854S54LtCatTa66B.1.438.10.000644
ORF854S54LtCatTa66B.1.5250.000679
ORF854S54LtCatTa66B.1.5960.000523
ORF854S54LtCatTa55AD.20.001095
ORF854S54LtCatTa55AY.140.00044
ORF854S54LtCatTa55AY.690.000933
ORF854S54LtCatTa55AY.920.001436
ORF854S54LtCatTa55B.1.1110.005875
ORF854S54LtCatTa55B.1.160.330.022124
ORF854S54LtCatTa55B.1.2410.004058
ORF854S54LtCatTa55B.1.4270.000252
ORF854S54LtCatTa44AY.120.001264
ORF854S54LtCatTa44AY.46.50.000794
ORF854S54LtCatTa44AY.5.20.009852
ORF854S54LtCatTa44AY.540.000381
ORF854S54LtCatTa44B.1.1.250.002274
ORF854S54LtCatTa44B.1.1.3110.001433
ORF854S54LtCatTa44B.1.177.180.00464
ORF854S54LtCatTa44B.1.177.690.005935
ORF854S54LtCatTa44B.1.4970.001259
ORF854S54LtCatTa44B.1.6190.003484
ORF854S54LtCatTa44C.300.006908
ORF854S54LtCatTa44Q.80.00066
ORF854S54LtCatTa33A0.001161
ORF854S54LtCatTa33A.20.001985
ORF854S54LtCatTa33AY.1080.003308
ORF854S54LtCatTa33AY.130.000483
ORF854S54LtCatTa33AY.360.000445
ORF854S54LtCatTa33AY.90.000203
ORF854S54LtCatTa33AY.990.003148
ORF854S54LtCatTa33B0.000383
ORF854S54LtCatTa33B.1.1.2140.000166
ORF854S54LtCatTa33B.1.1.280.000934
ORF854S54LtCatTa33B.1.1.3180.000905
ORF854S54LtCatTa33B.1.1.4480.006098
ORF854S54LtCatTa33B.1.36.290.001552
ORF854S54LtCatTa33B.1.5610.001191
ORF854S54LtCatTa33B.1.6270.006061
ORF854S54LtCatTa33B.1.9.40.018405
ORF854S54LtCatTa33B.30.002492
ORF854S54LtCatTa33P.1.100.000808
ORF854S54LtCatTa33P.1.120.001452
ORF854S54LtCatTa33P.1.150.000697
ORF854S54LtCatTa22A.270.003311
ORF854S54LtCatTa22AY.1110.000366
ORF854S54LtCatTa22AY.160.000759
ORF854S54LtCatTa22AY.280.003781
ORF854S54LtCatTa22AY.320.001065
ORF854S54LtCatTa22AY.4.2.10.000298
ORF854S54LtCatTa22AY.4.40.000818
ORF854S54LtCatTa22AY.5.30.000675
ORF854S54LtCatTa22AY.5.40.000553
ORF854S54LtCatTa22AY.60.000082
ORF854S54LtCatTa22AY.7.20.001119
ORF854S54LtCatTa22AY.9.10.000167
ORF854S54LtCatTa22B.1.1.10.000653
ORF854S54LtCatTa22B.1.1.1570.001826
ORF854S54LtCatTa22B.1.1.2770.001517
ORF854S54LtCatTa22B.1.1.2980.001724
ORF854S54LtCatTa22B.1.1.3060.000877
ORF854S54LtCatTa22B.1.1.370.000386
ORF854S54LtCatTa22B.1.1.390.001019
ORF854S54LtCatTa22B.1.1.3970.004505
ORF854S54LtCatTa22B.1.1.4160.00181
ORF854S54LtCatTa22B.1.1.4320.002532
ORF854S54LtCatTa22B.1.1.5230.003125
ORF854S54LtCatTa22B.1.177.860.000367
ORF854S54LtCatTa22B.1.36.10.002281
ORF854S54LtCatTa22B.1.36.170.000988
ORF854S54LtCatTa22B.1.3960.001411
ORF854S54LtCatTa22B.1.4090.001563
ORF854S54LtCatTa22B.1.466.20.000782
ORF854S54LtCatTa22B.1.6090.000959
ORF854S54LtCatTa22B.1.617.10.000258
ORF854S54LtCatTa22B.1.6180.008065
ORF854S54LtCatTa22B.1.621.10.001012
ORF854S54LtCatTa22C.36.30.001134
ORF854S54LtCatTa22P.1.160.000748
ORF854S54LtCatTa11A.230.010526
ORF854S54LtCatTa11AY.1050.000643
ORF854S54LtCatTa11AY.1130.000142
ORF854S54LtCatTa11AY.1140.000231
ORF854S54LtCatTa11AY.1210.000135
ORF854S54LtCatTa11AY.16.10.00047
ORF854S54LtCatTa11AY.300.000396
ORF854S54LtCatTa11AY.350.000233
ORF854S54LtCatTa11AY.420.00004
ORF854S54LtCatTa11AY.46.20.000635
ORF854S54LtCatTa11AY.530.000288
ORF854S54LtCatTa11AY.580.000907
ORF854S54LtCatTa11AY.590.00053
ORF854S54LtCatTa11AY.650.000533
ORF854S54LtCatTa11AY.680.000274
ORF854S54LtCatTa11AY.7.10.000113
ORF854S54LtCatTa11AY.700.000209
ORF854S54LtCatTa11AY.750.000056
ORF854S54LtCatTa11AY.850.000427
ORF854S54LtCatTa11AY.870.000833
ORF854S54LtCatTa11AY.9.2.10.001976
ORF854S54LtCatTa11B.1.1.160.055556
ORF854S54LtCatTa11B.1.1.1610.003534
ORF854S54LtCatTa11B.1.1.2630.001558
ORF854S54LtCatTa11B.1.1.2820.011628
ORF854S54LtCatTa11B.1.1.2940.001266
ORF854S54LtCatTa11B.1.1.3020.002075
ORF854S54LtCatTa11B.1.1.3170.000412
ORF854S54LtCatTa11B.1.1.330.000421
ORF854S54LtCatTa11B.1.1.3760.005952
ORF854S54LtCatTa11B.1.1.4340.000349
ORF854S54LtCatTa11B.1.1.4810.071429
ORF854S54LtCatTa11B.1.130.002375
ORF854S54LtCatTa11B.1.1390.000733
ORF854S54LtCatTa11B.1.160.160.000929
ORF854S54LtCatTa11B.1.160.300.002976
ORF854S54LtCatTa11B.1.177.120.000152
ORF854S54LtCatTa11B.1.177.190.001431
ORF854S54LtCatTa11B.1.177.320.00135
ORF854S54LtCatTa11B.1.177.420.000894
ORF854S54LtCatTa11B.1.177.520.001757
ORF854S54LtCatTa11B.1.177.540.000606
ORF854S54LtCatTa11B.1.177.570.000281
ORF854S54LtCatTa11B.1.177.730.000566
ORF854S54LtCatTa11B.1.177.830.001481
ORF854S54LtCatTa11B.1.2060.000816
ORF854S54LtCatTa11B.1.214.20.0006
ORF854S54LtCatTa11B.1.22.10.03125
ORF854S54LtCatTa11B.1.2230.002778
ORF854S54LtCatTa11B.1.2320.000537
ORF854S54LtCatTa11B.1.2390.001221
ORF854S54LtCatTa11B.1.3110.000275
ORF854S54LtCatTa11B.1.3360.002439
ORF854S54LtCatTa11B.1.3480.018182
ORF854S54LtCatTa11B.1.351.20.000303
ORF854S54LtCatTa11B.1.351.50.0006
ORF854S54LtCatTa11B.1.3570.009524
ORF854S54LtCatTa11B.1.36.100.004785
ORF854S54LtCatTa11B.1.36.180.00042
ORF854S54LtCatTa11B.1.36.90.003215
ORF854S54LtCatTa11B.1.3620.001541
ORF854S54LtCatTa11B.1.362.20.004717
ORF854S54LtCatTa11B.1.4040.001302
ORF854S54LtCatTa11B.1.416.10.001563
ORF854S54LtCatTa11B.1.4560.003268
ORF854S54LtCatTa11B.1.4590.004082
ORF854S54LtCatTa11B.1.4710.002732
ORF854S54LtCatTa11B.1.5040.03125
ORF854S54LtCatTa11B.1.5090.000866
ORF854S54LtCatTa11B.1.5440.006024
ORF854S54LtCatTa11B.1.5650.00081
ORF854S54LtCatTa11B.1.5680.001111
ORF854S54LtCatTa11B.1.575.10.002439
ORF854S54LtCatTa11B.1.619.10.000641
ORF854S54LtCatTa11B.390.002331
ORF854S54LtCatTa11C.10.002392
ORF854S54LtCatTa11C.36.3.10.002717
ORF854S54LtCatTa11N.20.038462
ORF854S54LtCatTa11N.40.004255
ORF854S54LtCatTa11P.1.130.000898
ORF854S54LtCatTa11Q.30.000145
ORF854S54LtCatTa11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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