CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 46

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF8	46	Y46del		del	TAT	---	2034	2034	1	28029-28031
ORF8	46	Y46Y		syn	taT	taC	917	917	1	28029-28031
ORF8	46	Y46C		nonsyn	tAt	tGt	460	460	1	28029-28031
ORF8	46	Y46del2		del	TAt	--t	424	421	0.992925	28029-28031
ORF8	46	Y46del2		del	tAT	t--	424	2	0.00471698	28029-28031
ORF8	46	Y46del2		del	TAT	--N	424	1	0.00235849	28029-28031
ORF8	46	Y46H		nonsyn	Tat	Cat	209	209	1	28029-28031
ORF8	46	Y46X		nonsyn	taT	taA	42	34	0.809524	28029-28031
ORF8	46	Y46X		nonsyn	taT	taG	42	8	0.190476	28029-28031
ORF8	46	Y46F		nonsyn	tAt	tTt	20	20	1	28029-28031
ORF8	46	Y46del1		del	Tat	-at	9	7	0.777778	28029-28031
ORF8	46	Y46del1		del	taT	ta-	9	2	0.222222	28029-28031
ORF8	46	Y46S		nonsyn	tAt	tCt	7	7	1	28029-28031
ORF8	46	Y46K		nonsyn	TaT	AaA	7	6	0.857143	28029-28031
ORF8	46	Y46K		nonsyn	TaT	AaG	7	1	0.142857	28029-28031
ORF8	46	Y46N		nonsyn	Tat	Aat	6	6	1	28029-28031
ORF8	46	Y46D		nonsyn	Tat	Gat	5	5	1	28029-28031
ORF8	46	Y46E		nonsyn	TaT	GaA	4	4	1	28029-28031
ORF8	46	Y46G		nonsyn	TAt	GGt	4	4	1	28029-28031
ORF8	46	Y46Q		nonsyn	TaT	CaG	3	3	1	28029-28031
ORF8	46	Y46V		nonsyn	TAT	GTA	2	2	1	28029-28031
ORF8	46	Y46R		nonsyn	TAT	CGC	2	1	0.5	28029-28031
ORF8	46	Y46R		nonsyn	TAt	CGt	2	1	0.5	28029-28031

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF8	46	Y46del	TAT	---	2034	2034	All	0.000389
ORF8	46	Y46del	TAT	---	991	991	B.1.1.7	0.000887
ORF8	46	Y46Y	taT	taC	917	917	All	0.000175
ORF8	46	Y46C	tAt	tGt	460	460	All	0.000088
ORF8	46	Y46del2	TAt	--t	421	424	All	0.000081
ORF8	46	Y46del2	tAT	t--	2	424	All	0
ORF8	46	Y46del2	TAT	--N	1	424	All	0
ORF8	46	Y46Y	taT	taC	370	370	B.1.1.7	0.000331
ORF8	46	Y46Y	taT	taC	266	266	R.1	0.023942
ORF8	46	Y46del2	TAt	--t	230	230	AY.25	0.001383
ORF8	46	Y46H	Tat	Cat	209	209	All	0.00004
ORF8	46	Y46del2	TAt	--t	137	137	B.1.605	0.815476
ORF8	46	Y46del	TAT	---	105	105	AY.4	0.000163
ORF8	46	Y46del	TAT	---	82	82	B.1.617.2	0.000309
ORF8	46	Y46C	tAt	tGt	69	69	AY.44	0.00042
ORF8	46	Y46del	TAT	---	67	67	AY.103	0.000416
ORF8	46	Y46H	Tat	Cat	64	64	B.1.369	0.018254
ORF8	46	Y46del	TAT	---	58	58	B.1.1.294	0.073418
ORF8	46	Y46C	tAt	tGt	57	57	AY.103	0.000354
ORF8	46	Y46C	tAt	tGt	56	56	AY.4	0.000087
ORF8	46	Y46C	tAt	tGt	51	51	B.1.1.7	0.000046
ORF8	46	Y46del	TAT	---	45	45	B.1.351	0.001338
ORF8	46	Y46del	TAT	---	43	43	AY.3	0.000428
ORF8	46	Y46X	taT	taA	34	42	All	0.000007
ORF8	46	Y46X	taT	taG	8	42	All	0.000002
ORF8	46	Y46del	TAT	---	41	41	AY.29	0.000647
ORF8	46	Y46H	Tat	Cat	38	38	B.1.1.7	0.000034
ORF8	46	Y46del	TAT	---	37	37	B.1.1	0.000671
ORF8	46	Y46del	TAT	---	35	35	AY.44	0.000213
ORF8	46	Y46C	tAt	tGt	34	34	AY.25	0.000205
ORF8	46	Y46del	TAT	---	34	34	AY.43	0.000151
ORF8	46	Y46del	TAT	---	34	34	B.1.243	0.002366
ORF8	46	Y46del	TAT	---	33	33	B.1.1.222	0.006732
ORF8	46	Y46del	TAT	---	33	33	B.1.160	0.001029
ORF8	46	Y46del	TAT	---	31	31	AY.102	0.000822
ORF8	46	Y46X	taT	taA	25	28	B.1.1.7	0.000022
ORF8	46	Y46X	taT	taG	3	28	B.1.1.7	0.000003
ORF8	46	Y46Y	taT	taC	25	25	AY.6	0.001028
ORF8	46	Y46C	tAt	tGt	24	24	AY.26	0.000679
ORF8	46	Y46F	tAt	tTt	20	20	All	0.000004
ORF8	46	Y46del	TAT	---	19	19	B	0.002428
ORF8	46	Y46Y	taT	taC	18	18	B.1.2	0.000158
ORF8	46	Y46Y	taT	taC	17	17	B.1.221	0.001208
ORF8	46	Y46C	tAt	tGt	16	16	B.1	0.000147
ORF8	46	Y46Y	taT	taC	15	15	AY.43	0.000066
ORF8	46	Y46Y	taT	taC	14	14	AY.4	0.000022
ORF8	46	Y46H	Tat	Cat	14	14	AY.4	0.000022
ORF8	46	Y46del	TAT	---	14	14	B.1.160.16	0.013011
ORF8	46	Y46C	tAt	tGt	14	14	B.1.617.2	0.000053
ORF8	46	Y46Y	taT	taC	14	14	B.1.617.2	0.000053
ORF8	46	Y46del	TAT	---	13	13	B.1.1.318	0.003923
ORF8	46	Y46Y	taT	taC	13	13	B.1.258	0.000865
ORF8	46	Y46del	TAT	---	13	13	P.1	0.000205
ORF8	46	Y46Y	taT	taC	12	12	AY.23	0.000837
ORF8	46	Y46del	TAT	---	12	12	AY.27	0.000777
ORF8	46	Y46del	TAT	---	12	12	B.1	0.00011
ORF8	46	Y46Y	taT	taC	12	12	B.1	0.00011
ORF8	46	Y46Y	taT	taC	11	11	B.1.1.402	0.122222
ORF8	46	Y46del	TAT	---	11	11	B.1.2	0.000097
ORF8	46	Y46del2	TAt	--t	11	11	R.1	0.00099
ORF8	46	Y46C	tAt	tGt	10	10	B.1.2	0.000088
ORF8	46	Y46C	tAt	tGt	10	10	B.1.429	0.000235
ORF8	46	Y46H	Tat	Cat	10	10	B.1.617.2	0.000038
ORF8	46	Y46del1	Tat	-at	7	9	All	0.000001
ORF8	46	Y46del1	taT	ta-	2	9	All	0
ORF8	46	Y46del	TAT	---	9	9	AY.118	0.000564
ORF8	46	Y46del	TAT	---	9	9	AY.25	0.000054
ORF8	46	Y46del	TAT	---	9	9	AY.26	0.000255
ORF8	46	Y46Y	taT	taC	9	9	AY.3	0.00009
ORF8	46	Y46C	tAt	tGt	9	9	AY.3	0.00009
ORF8	46	Y46del2	TAt	--t	9	9	B.1	0.000082
ORF8	46	Y46Y	taT	taC	9	9	B.1.1	0.000163
ORF8	46	Y46C	tAt	tGt	9	9	C.37	0.001045
ORF8	46	Y46Y	taT	taC	8	8	AY.103	0.00005
ORF8	46	Y46del2	TAt	--t	8	8	AY.4	0.000012
ORF8	46	Y46C	tAt	tGt	8	8	AY.43	0.000035
ORF8	46	Y46C	tAt	tGt	8	8	B.1.1	0.000145
ORF8	46	Y46del	TAT	---	8	8	B.1.1.284	0.000859
ORF8	46	Y46del2	TAt	--t	8	8	B.1.1.7	0.000007
ORF8	46	Y46H	Tat	Cat	8	8	B.1.177	0.000105
ORF8	46	Y46del	TAT	---	8	8	B.1.240	0.001725
ORF8	46	Y46del	TAT	---	8	8	B.1.628	0.002819
ORF8	46	Y46S	tAt	tCt	7	7	All	0.000001
ORF8	46	Y46K	TaT	AaA	6	7	All	0.000001
ORF8	46	Y46K	TaT	AaG	1	7	All	0
ORF8	46	Y46H	Tat	Cat	7	7	AY.20	0.000272
ORF8	46	Y46H	Tat	Cat	7	7	AY.26	0.000198
ORF8	46	Y46del	TAT	---	7	7	AY.4.2	0.000152
ORF8	46	Y46H	Tat	Cat	7	7	AY.43	0.000031
ORF8	46	Y46del	TAT	---	7	7	B.1.1.265	0.022082
ORF8	46	Y46del	TAT	---	7	7	B.1.1.519	0.000278
ORF8	46	Y46F	tAt	tTt	7	7	B.1.1.7	0.000006
ORF8	46	Y46del	TAT	---	7	7	B.1.36.16	0.009972
ORF8	46	Y46del	TAT	---	7	7	P.1.14	0.000335
ORF8	46	Y46N	Tat	Aat	6	6	All	0.000001
ORF8	46	Y46Y	taT	taC	6	6	AY.102	0.000159
ORF8	46	Y46del	TAT	---	6	6	AY.119	0.000212
ORF8	46	Y46del	TAT	---	6	6	AY.32	0.003195
ORF8	46	Y46del	TAT	---	6	6	AY.35	0.001398
ORF8	46	Y46Y	taT	taC	6	6	AY.44	0.000037
ORF8	46	Y46del	TAT	---	6	6	B.1.177.83	0.008889
ORF8	46	Y46del	TAT	---	6	6	B.1.243.2	0.086957
ORF8	46	Y46Y	taT	taC	6	6	B.1.258.17	0.000624
ORF8	46	Y46D	Tat	Gat	5	5	All	0.000001
ORF8	46	Y46C	tAt	tGt	5	5	AY.20	0.000194
ORF8	46	Y46H	Tat	Cat	5	5	AY.29	0.000079
ORF8	46	Y46Y	taT	taC	5	5	AY.29	0.000079
ORF8	46	Y46del	TAT	---	5	5	AY.29.1	0.001103
ORF8	46	Y46del	TAT	---	5	5	AY.39	0.000124
ORF8	46	Y46del	TAT	---	5	5	AY.47	0.000156
ORF8	46	Y46C	tAt	tGt	5	5	AY.5	0.000103
ORF8	46	Y46del	TAT	---	5	5	B.1.1.389	0.030303
ORF8	46	Y46del	TAT	---	5	5	B.1.177	0.000066
ORF8	46	Y46Y	taT	taC	5	5	B.1.427	0.000252
ORF8	46	Y46H	Tat	Cat	5	5	B.1.596	0.000436
ORF8	46	Y46C	tAt	tGt	5	5	P.1	0.000079
ORF8	46	Y46G	TAt	GGt	4	4	All	0.000001
ORF8	46	Y46E	TaT	GaA	4	4	All	0.000001
ORF8	46	Y46C	tAt	tGt	4	4	AY.27	0.000259
ORF8	46	Y46del	TAT	---	4	4	AY.34	0.000388
ORF8	46	Y46Y	taT	taC	4	4	AY.39.1	0.000158
ORF8	46	Y46H	Tat	Cat	4	4	AY.42	0.000161
ORF8	46	Y46C	tAt	tGt	4	4	AY.54	0.000381
ORF8	46	Y46del	TAT	---	4	4	AY.6	0.000165
ORF8	46	Y46del	TAT	---	4	4	AY.7.2	0.002237
ORF8	46	Y46Y	taT	taC	4	4	AY.9.2	0.000147
ORF8	46	Y46del	TAT	---	4	4	B.1.1.214	0.000222
ORF8	46	Y46Y	taT	taC	4	4	B.1.1.317	0.001647
ORF8	46	Y46del	TAT	---	4	4	B.1.429	0.000094
ORF8	46	Y46Y	taT	taC	4	4	B.1.525	0.000453
ORF8	46	Y46del	TAT	---	4	4	B.1.526	0.000094
ORF8	46	Y46H	Tat	Cat	3	3	A.2.5	0.001497
ORF8	46	Y46Q	TaT	CaG	3	3	All	0.000001
ORF8	46	Y46C	tAt	tGt	3	3	AY.102	0.00008
ORF8	46	Y46C	tAt	tGt	3	3	AY.109	0.002219
ORF8	46	Y46Y	taT	taC	3	3	AY.111	0.000549
ORF8	46	Y46Y	taT	taC	3	3	AY.113	0.000427
ORF8	46	Y46Y	taT	taC	3	3	AY.25	0.000018
ORF8	46	Y46H	Tat	Cat	3	3	AY.25	0.000018
ORF8	46	Y46Y	taT	taC	3	3	AY.36	0.000445
ORF8	46	Y46C	tAt	tGt	3	3	AY.39.1	0.000119
ORF8	46	Y46C	tAt	tGt	3	3	AY.4.5	0.000322
ORF8	46	Y46C	tAt	tGt	3	3	AY.45	0.000365
ORF8	46	Y46del	TAT	---	3	3	AY.5	0.000062
ORF8	46	Y46H	Tat	Cat	3	3	AY.61	0.000314
ORF8	46	Y46C	tAt	tGt	3	3	AY.99.2	0.000276
ORF8	46	Y46Y	taT	taC	3	3	B	0.000383
ORF8	46	Y46K	TaT	AaA	3	3	B.1.1	0.000054
ORF8	46	Y46del	TAT	---	3	3	B.1.1.398	0.009677
ORF8	46	Y46del2	TAt	--t	3	3	B.1.2	0.000026
ORF8	46	Y46F	tAt	tTt	3	3	B.1.2	0.000026
ORF8	46	Y46del	TAT	---	3	3	B.1.22	0.003953
ORF8	46	Y46Y	taT	taC	3	3	B.1.36	0.000438
ORF8	46	Y46del	TAT	---	3	3	B.1.509	0.002597
ORF8	46	Y46Y	taT	taC	3	3	C.36	0.002732
ORF8	46	Y46X	taT	taA	3	3	P.1	0.000047
ORF8	46	Y46del	TAT	---	3	3	P.1.1	0.000953
ORF8	46	Y46del	TAT	---	3	3	P.1.15	0.000697
ORF8	46	Y46X	taT	taA	2	2		0.111111
ORF8	46	Y46del	TAT	---	2	2		0.111111
ORF8	46	Y46Q	TaT	CaG	2	2		0.111111
ORF8	46	Y46del2	tAT	t--	2	2		0.111111
ORF8	46	Y46V	TAT	GTA	2	2	All	0
ORF8	46	Y46R	TAt	CGt	1	2	All	0
ORF8	46	Y46R	TAT	CGC	1	2	All	0
ORF8	46	Y46del	TAT	---	2	2	AY.100	0.000092
ORF8	46	Y46H	Tat	Cat	2	2	AY.102	0.000053
ORF8	46	Y46H	Tat	Cat	2	2	AY.103	0.000012
ORF8	46	Y46del2	TAt	--t	2	2	AY.103	0.000012
ORF8	46	Y46del	TAT	---	2	2	AY.108	0.002205
ORF8	46	Y46del1	Tat	-at	2	2	AY.119	0.000071
ORF8	46	Y46C	tAt	tGt	2	2	AY.119	0.000071
ORF8	46	Y46C	tAt	tGt	2	2	AY.23	0.000139
ORF8	46	Y46del1	Tat	-at	2	2	AY.3	0.00002
ORF8	46	Y46H	Tat	Cat	2	2	AY.3	0.00002
ORF8	46	Y46C	tAt	tGt	2	2	AY.33	0.000134
ORF8	46	Y46del2	TAt	--t	2	2	AY.39	0.000049
ORF8	46	Y46H	Tat	Cat	2	2	AY.4.2	0.000043
ORF8	46	Y46del	TAT	---	2	2	AY.46	0.000208
ORF8	46	Y46del	TAT	---	2	2	AY.48	0.00093
ORF8	46	Y46C	tAt	tGt	2	2	AY.75.1	0.000361
ORF8	46	Y46del	TAT	---	2	2	AY.84	0.000875
ORF8	46	Y46del	TAT	---	2	2	AY.98.1	0.000097
ORF8	46	Y46H	Tat	Cat	2	2	B.1.1	0.000036
ORF8	46	Y46Y	taT	taC	2	2	B.1.1.194	0.009901
ORF8	46	Y46G	TAt	GGt	2	2	B.1.1.294	0.002532
ORF8	46	Y46C	tAt	tGt	2	2	B.1.1.348	0.001592
ORF8	46	Y46Y	taT	taC	2	2	B.1.1.519	0.000079
ORF8	46	Y46del	TAT	---	2	2	B.1.126	0.002551
ORF8	46	Y46V	TAT	GTA	2	2	B.1.160	0.000062
ORF8	46	Y46Y	taT	taC	2	2	B.1.177	0.000026
ORF8	46	Y46del	TAT	---	2	2	B.1.177.77	0.001452
ORF8	46	Y46del	TAT	---	2	2	B.1.206	0.001631
ORF8	46	Y46del	TAT	---	2	2	B.1.210	0.004264
ORF8	46	Y46del	TAT	---	2	2	B.1.258.17	0.000208
ORF8	46	Y46del	TAT	---	2	2	B.1.36	0.000292
ORF8	46	Y46del	TAT	---	2	2	B.1.427	0.000101
ORF8	46	Y46del2	TAt	--t	2	2	B.1.595	0.000522
ORF8	46	Y46C	tAt	tGt	2	2	B.1.596	0.000174
ORF8	46	Y46F	tAt	tTt	2	2	B.1.617.2	0.000008
ORF8	46	Y46del	TAT	---	2	2	B.40	0.000729
ORF8	46	Y46D	Tat	Gat	2	2	P.1	0.000032
ORF8	46	Y46E	TaT	GaA	2	2	P.1	0.000032
ORF8	46	Y46del	TAT	---	2	2	P.1.17	0.000324
ORF8	46	Y46del	TAT	---	2	2	Q.8	0.00033
ORF8	46	Y46D	Tat	Gat	1	1	A.2.4	0.003367
ORF8	46	Y46Y	taT	taC	1	1	A.2.5	0.000499
ORF8	46	Y46del	TAT	---	1	1	A.23	0.010526
ORF8	46	Y46Y	taT	taC	1	1	AA.7	0.009174
ORF8	46	Y46del	TAT	---	1	1	AE.4	0.043478
ORF8	46	Y46C	tAt	tGt	1	1	AY.100	0.000046
ORF8	46	Y46F	tAt	tTt	1	1	AY.100	0.000046
ORF8	46	Y46del2	TAt	--t	1	1	AY.102	0.000027
ORF8	46	Y46X	taT	taA	1	1	AY.103	0.000006
ORF8	46	Y46del2	TAt	--t	1	1	AY.105	0.000643
ORF8	46	Y46H	Tat	Cat	1	1	AY.106	0.000335
ORF8	46	Y46C	tAt	tGt	1	1	AY.111	0.000183
ORF8	46	Y46H	Tat	Cat	1	1	AY.113	0.000142
ORF8	46	Y46C	tAt	tGt	1	1	AY.113	0.000142
ORF8	46	Y46C	tAt	tGt	1	1	AY.116	0.000287
ORF8	46	Y46Y	taT	taC	1	1	AY.116	0.000287
ORF8	46	Y46Y	taT	taC	1	1	AY.117	0.000085
ORF8	46	Y46Y	taT	taC	1	1	AY.12	0.000316
ORF8	46	Y46C	tAt	tGt	1	1	AY.120	0.000037
ORF8	46	Y46del	TAT	---	1	1	AY.13	0.000161
ORF8	46	Y46Y	taT	taC	1	1	AY.13	0.000161
ORF8	46	Y46del	TAT	---	1	1	AY.14	0.000088
ORF8	46	Y46H	Tat	Cat	1	1	AY.16	0.00038
ORF8	46	Y46Y	taT	taC	1	1	AY.16.1	0.00047
ORF8	46	Y46del	TAT	---	1	1	AY.20	0.000039
ORF8	46	Y46F	tAt	tTt	1	1	AY.20	0.000039
ORF8	46	Y46Y	taT	taC	1	1	AY.20	0.000039
ORF8	46	Y46del	TAT	---	1	1	AY.23	0.00007
ORF8	46	Y46X	taT	taA	1	1	AY.23.1	0.000417
ORF8	46	Y46F	tAt	tTt	1	1	AY.25	0.000006
ORF8	46	Y46Y	taT	taC	1	1	AY.26	0.000028
ORF8	46	Y46Y	taT	taC	1	1	AY.27	0.000065
ORF8	46	Y46C	tAt	tGt	1	1	AY.29	0.000016
ORF8	46	Y46C	tAt	tGt	1	1	AY.32	0.000532
ORF8	46	Y46H	Tat	Cat	1	1	AY.33	0.000067
ORF8	46	Y46Y	taT	taC	1	1	AY.34	0.000097
ORF8	46	Y46H	Tat	Cat	1	1	AY.36	0.000148
ORF8	46	Y46H	Tat	Cat	1	1	AY.39	0.000025
ORF8	46	Y46H	Tat	Cat	1	1	AY.39.1	0.00004
ORF8	46	Y46del1	Tat	-at	1	1	AY.4	0.000002
ORF8	46	Y46F	tAt	tTt	1	1	AY.4	0.000002
ORF8	46	Y46F	tAt	tTt	1	1	AY.4.1	0.000737
ORF8	46	Y46C	tAt	tGt	1	1	AY.4.2	0.000022
ORF8	46	Y46Y	taT	taC	1	1	AY.4.2	0.000022
ORF8	46	Y46del	TAT	---	1	1	AY.4.4	0.000409
ORF8	46	Y46Y	taT	taC	1	1	AY.4.5	0.000107
ORF8	46	Y46del	TAT	---	1	1	AY.42	0.00004
ORF8	46	Y46X	taT	taG	1	1	AY.43	0.000004
ORF8	46	Y46K	TaT	AaG	1	1	AY.43	0.000004
ORF8	46	Y46F	tAt	tTt	1	1	AY.43	0.000004
ORF8	46	Y46del2	TAt	--t	1	1	AY.44	0.000006
ORF8	46	Y46H	Tat	Cat	1	1	AY.44	0.000006
ORF8	46	Y46del	TAT	---	1	1	AY.45	0.000122
ORF8	46	Y46del2	TAt	--t	1	1	AY.45	0.000122
ORF8	46	Y46C	tAt	tGt	1	1	AY.46	0.000104
ORF8	46	Y46C	tAt	tGt	1	1	AY.46.1	0.001027
ORF8	46	Y46C	tAt	tGt	1	1	AY.46.6	0.000072
ORF8	46	Y46del2	TAt	--t	1	1	AY.47	0.000031
ORF8	46	Y46C	tAt	tGt	1	1	AY.47	0.000031
ORF8	46	Y46H	Tat	Cat	1	1	AY.47	0.000031
ORF8	46	Y46H	Tat	Cat	1	1	AY.5.3	0.000337
ORF8	46	Y46del	TAT	---	1	1	AY.5.3	0.000337
ORF8	46	Y46C	tAt	tGt	1	1	AY.6	0.000041
ORF8	46	Y46Y	taT	taC	1	1	AY.67	0.000464
ORF8	46	Y46X	taT	taA	1	1	AY.69	0.000187
ORF8	46	Y46del	TAT	---	1	1	AY.70	0.000209
ORF8	46	Y46C	tAt	tGt	1	1	AY.73	0.000665
ORF8	46	Y46del	TAT	---	1	1	AY.74	0.000116
ORF8	46	Y46H	Tat	Cat	1	1	AY.74	0.000116
ORF8	46	Y46N	Tat	Aat	1	1	AY.85	0.000427
ORF8	46	Y46C	tAt	tGt	1	1	AY.87	0.000833
ORF8	46	Y46Y	taT	taC	1	1	AY.9	0.000068
ORF8	46	Y46del	TAT	---	1	1	AY.9	0.000068
ORF8	46	Y46C	tAt	tGt	1	1	AY.9.1	0.000084
ORF8	46	Y46Y	taT	taC	1	1	AY.9.1	0.000084
ORF8	46	Y46E	TaT	GaA	1	1	AY.9.2	0.000037
ORF8	46	Y46del	TAT	---	1	1	AY.92	0.000287
ORF8	46	Y46del	TAT	---	1	1	AY.98	0.000079
ORF8	46	Y46Y	taT	taC	1	1	AY.98.1	0.000048
ORF8	46	Y46Y	taT	taC	1	1	AY.99	0.001049
ORF8	46	Y46del	TAT	---	1	1	AY.99.2	0.000092
ORF8	46	Y46C	tAt	tGt	1	1	AZ.1	0.000867
ORF8	46	Y46del	TAT	---	1	1	AZ.2	0.000821
ORF8	46	Y46S	tAt	tCt	1	1	AZ.4	0.003356
ORF8	46	Y46X	taT	taG	1	1	B.1	0.000009
ORF8	46	Y46K	TaT	AaA	1	1	B.1	0.000009
ORF8	46	Y46H	Tat	Cat	1	1	B.1	0.000009
ORF8	46	Y46Q	TaT	CaG	1	1	B.1.1	0.000018
ORF8	46	Y46F	tAt	tTt	1	1	B.1.1	0.000018
ORF8	46	Y46X	taT	taA	1	1	B.1.1	0.000018
ORF8	46	Y46del	TAT	---	1	1	B.1.1.174	0.003378
ORF8	46	Y46del	TAT	---	1	1	B.1.1.207	0.001182
ORF8	46	Y46del1	Tat	-at	1	1	B.1.1.214	0.000055
ORF8	46	Y46del	TAT	---	1	1	B.1.1.216	0.00089
ORF8	46	Y46Y	taT	taC	1	1	B.1.1.220	0.001859
ORF8	46	Y46Y	taT	taC	1	1	B.1.1.222	0.000204
ORF8	46	Y46del	TAT	---	1	1	B.1.1.25	0.000569
ORF8	46	Y46del	TAT	---	1	1	B.1.1.269	0.001353
ORF8	46	Y46G	TAt	GGt	1	1	B.1.1.28	0.000311
ORF8	46	Y46C	tAt	tGt	1	1	B.1.1.28	0.000311
ORF8	46	Y46K	TaT	AaA	1	1	B.1.1.282	0.011628
ORF8	46	Y46del	TAT	---	1	1	B.1.1.297	0.002237
ORF8	46	Y46F	tAt	tTt	1	1	B.1.1.312	0.001912
ORF8	46	Y46S	tAt	tCt	1	1	B.1.1.315	0.008475
ORF8	46	Y46del	TAT	---	1	1	B.1.1.322	0.008772
ORF8	46	Y46Y	taT	taC	1	1	B.1.1.325	0.025641
ORF8	46	Y46del	TAT	---	1	1	B.1.1.354	0.004386
ORF8	46	Y46del	TAT	---	1	1	B.1.1.37	0.000193
ORF8	46	Y46del	TAT	---	1	1	B.1.1.517	0.006803
ORF8	46	Y46X	taT	taG	1	1	B.1.1.519	0.00004
ORF8	46	Y46C	tAt	tGt	1	1	B.1.1.519	0.00004
ORF8	46	Y46del	TAT	---	1	1	B.1.1.521	0.005348
ORF8	46	Y46del	TAT	---	1	1	B.1.1.63	0.000386
ORF8	46	Y46del1	Tat	-at	1	1	B.1.1.7	0.000001
ORF8	46	Y46N	Tat	Aat	1	1	B.1.1.7	0.000001
ORF8	46	Y46R	TAt	CGt	1	1	B.1.1.7	0.000001
ORF8	46	Y46Y	taT	taC	1	1	B.1.160	0.000031
ORF8	46	Y46C	tAt	tGt	1	1	B.1.160	0.000031
ORF8	46	Y46del2	TAt	--t	1	1	B.1.177	0.000013
ORF8	46	Y46S	tAt	tCt	1	1	B.1.177	0.000013
ORF8	46	Y46K	TaT	AaA	1	1	B.1.177	0.000013
ORF8	46	Y46del1	taT	ta-	1	1	B.1.177	0.000013
ORF8	46	Y46del	TAT	---	1	1	B.1.177.12	0.000152
ORF8	46	Y46del	TAT	---	1	1	B.1.177.21	0.000076
ORF8	46	Y46H	Tat	Cat	1	1	B.1.177.5	0.001242
ORF8	46	Y46H	Tat	Cat	1	1	B.1.177.62	0.001192
ORF8	46	Y46R	TAT	CGC	1	1	B.1.177.63	0.002703
ORF8	46	Y46del	TAT	---	1	1	B.1.177.7	0.000165
ORF8	46	Y46Y	taT	taC	1	1	B.1.177.7	0.000165
ORF8	46	Y46del	TAT	---	1	1	B.1.195	0.005025
ORF8	46	Y46N	Tat	Aat	1	1	B.1.2	0.000009
ORF8	46	Y46N	Tat	Aat	1	1	B.1.221	0.000071
ORF8	46	Y46C	tAt	tGt	1	1	B.1.234	0.000132
ORF8	46	Y46del	TAT	---	1	1	B.1.258	0.000067
ORF8	46	Y46C	tAt	tGt	1	1	B.1.258	0.000067
ORF8	46	Y46del	TAT	---	1	1	B.1.258.12	0.007874
ORF8	46	Y46del	TAT	---	1	1	B.1.258.9	0.005
ORF8	46	Y46del2	TAt	--t	1	1	B.1.311	0.000275
ORF8	46	Y46X	taT	taG	1	1	B.1.311	0.000275
ORF8	46	Y46Y	taT	taC	1	1	B.1.315	0.006061
ORF8	46	Y46del2	TAT	--N	1	1	B.1.351	0.00003
ORF8	46	Y46Y	taT	taC	1	1	B.1.351	0.00003
ORF8	46	Y46C	tAt	tGt	1	1	B.1.351	0.00003
ORF8	46	Y46del	TAT	---	1	1	B.1.351.2	0.000303
ORF8	46	Y46X	taT	taG	1	1	B.1.36.18	0.00042
ORF8	46	Y46C	tAt	tGt	1	1	B.1.36.18	0.00042
ORF8	46	Y46C	tAt	tGt	1	1	B.1.36.38	0.001642
ORF8	46	Y46H	Tat	Cat	1	1	B.1.367	0.000792
ORF8	46	Y46H	Tat	Cat	1	1	B.1.398	0.002976
ORF8	46	Y46Y	taT	taC	1	1	B.1.404	0.001302
ORF8	46	Y46C	tAt	tGt	1	1	B.1.422	0.000812
ORF8	46	Y46Y	taT	taC	1	1	B.1.426	0.001009
ORF8	46	Y46H	Tat	Cat	1	1	B.1.427	0.00005
ORF8	46	Y46G	TAt	GGt	1	1	B.1.445	0.011765
ORF8	46	Y46del	TAT	---	1	1	B.1.445	0.011765
ORF8	46	Y46del	TAT	---	1	1	B.1.468	0.005714
ORF8	46	Y46S	tAt	tCt	1	1	B.1.497	0.000315
ORF8	46	Y46del	TAT	---	1	1	B.1.525	0.000113
ORF8	46	Y46C	tAt	tGt	1	1	B.1.525	0.000113
ORF8	46	Y46Y	taT	taC	1	1	B.1.526	0.000024
ORF8	46	Y46S	tAt	tCt	1	1	B.1.526	0.000024
ORF8	46	Y46del	TAT	---	1	1	B.1.540	0.009709
ORF8	46	Y46del	TAT	---	1	1	B.1.549	0.007194
ORF8	46	Y46Y	taT	taC	1	1	B.1.551	0.00129
ORF8	46	Y46H	Tat	Cat	1	1	B.1.564	0.000426
ORF8	46	Y46del	TAT	---	1	1	B.1.564	0.000426
ORF8	46	Y46H	Tat	Cat	1	1	B.1.575	0.000303
ORF8	46	Y46del2	TAt	--t	1	1	B.1.575	0.000303
ORF8	46	Y46del	TAT	---	1	1	B.1.576	0.000907
ORF8	46	Y46Y	taT	taC	1	1	B.1.588	0.00091
ORF8	46	Y46del	TAT	---	1	1	B.1.596	0.000087
ORF8	46	Y46H	Tat	Cat	1	1	B.1.612	0.002653
ORF8	46	Y46D	Tat	Gat	1	1	B.1.617.1	0.000129
ORF8	46	Y46del	TAT	---	1	1	B.1.621	0.000089
ORF8	46	Y46C	tAt	tGt	1	1	B.1.621	0.000089
ORF8	46	Y46C	tAt	tGt	1	1	B.1.625	0.002353
ORF8	46	Y46del	TAT	---	1	1	B.34	0.013699
ORF8	46	Y46Y	taT	taC	1	1	B.6	0.00091
ORF8	46	Y46del	TAT	---	1	1	C.26	0.007353
ORF8	46	Y46del	TAT	---	1	1	C.37	0.000116
ORF8	46	Y46S	tAt	tCt	1	1	C.37	0.000116
ORF8	46	Y46C	tAt	tGt	1	1	L.3	0.003546
ORF8	46	Y46del	TAT	---	1	1	M.3	0.076923
ORF8	46	Y46del	TAT	---	1	1	N.6	0.007092
ORF8	46	Y46S	tAt	tCt	1	1	P.1	0.000016
ORF8	46	Y46N	Tat	Aat	1	1	P.1	0.000016
ORF8	46	Y46Y	taT	taC	1	1	P.1	0.000016
ORF8	46	Y46H	Tat	Cat	1	1	P.1	0.000016
ORF8	46	Y46del2	TAt	--t	1	1	P.1	0.000016
ORF8	46	Y46del1	taT	ta-	1	1	P.1	0.000016
ORF8	46	Y46del	TAT	---	1	1	P.1.12	0.000484
ORF8	46	Y46N	Tat	Aat	1	1	P.1.15	0.000232
ORF8	46	Y46Y	taT	taC	1	1	P.1.16	0.000374
ORF8	46	Y46D	Tat	Gat	1	1	P.1.17	0.000162
ORF8	46	Y46E	TaT	GaA	1	1	P.1.17	0.000162
ORF8	46	Y46del	TAT	---	1	1	P.1.7	0.000319
ORF8	46	Y46C	tAt	tGt	1	1	Q.1	0.000126
ORF8	46	Y46C	tAt	tGt	1	1	Q.3	0.000145
ORF8	46	Y46del	TAT	---	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.