CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 38

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF8	38	P38P		syn	ccT	ccC	50896	50883	0.999745	28005-28007
ORF8	38	P38P		syn	ccT	ccA	50896	10	0.000196479	28005-28007
ORF8	38	P38P		syn	ccT	ccG	50896	3	0.0000589437	28005-28007
ORF8	38	P38S		nonsyn	Cct	Tct	17601	17578	0.998693	28005-28007
ORF8	38	P38S		nonsyn	CcT	TcC	17601	23	0.00130674	28005-28007
ORF8	38	P38L		nonsyn	cCt	cTt	3148	2962	0.940915	28005-28007
ORF8	38	P38L		nonsyn	cCT	cTC	3148	186	0.0590851	28005-28007
ORF8	38	P38del		del	CCT	---	732	732	1	28005-28007
ORF8	38	P38H		nonsyn	cCt	cAt	63	63	1	28005-28007
ORF8	38	P38del1		del	ccT	cc-	61	55	0.901639	28005-28007
ORF8	38	P38del1		del	Cct	-ct	61	4	0.0655738	28005-28007
ORF8	38	P38del1		del	CCT	-NN	61	1	0.0163934	28005-28007
ORF8	38	P38del1		del	CCt	-Tt	61	1	0.0163934	28005-28007
ORF8	38	P38R		nonsyn	cCt	cGt	40	39	0.975	28005-28007
ORF8	38	P38R		nonsyn	cCT	cGC	40	1	0.025	28005-28007
ORF8	38	P38T		nonsyn	Cct	Act	34	29	0.852941	28005-28007
ORF8	38	P38T		nonsyn	CcT	AcC	34	4	0.117647	28005-28007
ORF8	38	P38T		nonsyn	CcT	AcG	34	1	0.0294118	28005-28007
ORF8	38	P38del2		del	cCT	c--	21	15	0.714286	28005-28007
ORF8	38	P38del2		del	CCt	--t	21	6	0.285714	28005-28007
ORF8	38	P38F		nonsyn	CCt	TTt	10	6	0.6	28005-28007
ORF8	38	P38F		nonsyn	CCT	TTC	10	4	0.4	28005-28007
ORF8	38	P38A		nonsyn	Cct	Gct	7	7	1	28005-28007
ORF8	38	P38V		nonsyn	CCt	GTt	7	7	1	28005-28007
ORF8	38	P38C		nonsyn	CCt	TGt	2	2	1	28005-28007
ORF8	38	P38Q		nonsyn	cCT	cAG	1	1	1	28005-28007
ORF8	38	P38G		nonsyn	CCt	GGt	1	1	1	28005-28007

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF8	38	P38P	ccT	ccC	50883	50896	All	0.009732
ORF8	38	P38P	ccT	ccA	10	50896	All	0.000002
ORF8	38	P38P	ccT	ccG	3	50896	All	0.000001
ORF8	38	P38P	ccT	ccC	24842	24845	B.1.617.2	0.09354
ORF8	38	P38P	ccT	ccA	2	24845	B.1.617.2	0.000008
ORF8	38	P38P	ccT	ccG	1	24845	B.1.617.2	0.000004
ORF8	38	P38P	ccT	ccC	20983	20983	AY.100	0.965357
ORF8	38	P38S	Cct	Tct	17578	17601	All	0.003362
ORF8	38	P38S	CcT	TcC	23	17601	All	0.000004
ORF8	38	P38S	Cct	Tct	11091	11092	B.1.621	0.981765
ORF8	38	P38S	CcT	TcC	1	11092	B.1.621	0.000089
ORF8	38	P38L	cCt	cTt	2962	3148	All	0.000567
ORF8	38	P38L	cCT	cTC	186	3148	All	0.000036
ORF8	38	P38S	Cct	Tct	1953	1953	B.1.621.1	0.98786
ORF8	38	P38P	ccT	ccC	1938	1938	AY.101	0.950466
ORF8	38	P38L	cCt	cTt	1073	1073	B.1.1.7	0.000961
ORF8	38	P38S	Cct	Tct	1053	1053	B.1.1.7	0.000943
ORF8	38	P38del	CCT	---	732	732	All	0.00014
ORF8	38	P38S	Cct	Tct	511	511	B.1.637	0.03734
ORF8	38	P38P	ccT	ccC	320	320	AY.102	0.008484
ORF8	38	P38S	Cct	Tct	312	312	B.1.177	0.004108
ORF8	38	P38S	Cct	Tct	302	302	AY.4	0.00047
ORF8	38	P38L	cCt	cTt	275	275	AY.4	0.000428
ORF8	38	P38L	cCt	cTt	271	271	AY.3	0.002695
ORF8	38	P38L	cCt	cTt	252	252	B.1.429	0.005929
ORF8	38	P38P	ccT	ccC	227	227	AY.117	0.019185
ORF8	38	P38S	Cct	Tct	208	208	AY.43	0.000922
ORF8	38	P38L	cCT	cTC	121	183	B.1.617.2	0.000456
ORF8	38	P38L	cCt	cTt	62	183	B.1.617.2	0.000233
ORF8	38	P38S	Cct	Tct	176	176	B.1	0.001612
ORF8	38	P38P	ccT	ccC	171	171	AY.103	0.001062
ORF8	38	P38S	Cct	Tct	166	166	B.1.351	0.004935
ORF8	38	P38P	ccT	ccC	164	165	AY.25	0.000986
ORF8	38	P38P	ccT	ccG	1	165	AY.25	0.000006
ORF8	38	P38S	Cct	Tct	147	161	B.1.617.2	0.000554
ORF8	38	P38S	CcT	TcC	14	161	B.1.617.2	0.000053
ORF8	38	P38P	ccT	ccC	160	160	AY.98	0.012639
ORF8	38	P38L	cCt	cTt	137	137	AY.44	0.000834
ORF8	38	P38P	ccT	ccC	131	131	AY.44	0.000797
ORF8	38	P38S	Cct	Tct	129	129	AY.7.1	0.014538
ORF8	38	P38P	ccT	ccC	129	129	AY.84	0.05643
ORF8	38	P38P	ccT	ccC	110	110	AY.86	0.091286
ORF8	38	P38del	CCT	---	110	110	B.1.1.7	0.000098
ORF8	38	P38P	ccT	ccC	107	107	AY.92	0.030738
ORF8	38	P38P	ccT	ccC	96	96	AY.118	0.006014
ORF8	38	P38del	CCT	---	96	96	AY.4	0.000149
ORF8	38	P38S	Cct	Tct	95	95	AD.2	0.020801
ORF8	38	P38P	ccT	ccC	90	90	AY.39	0.002224
ORF8	38	P38P	ccT	ccC	79	79	AY.113	0.011249
ORF8	38	P38P	ccT	ccC	78	78	AY.116	0.022369
ORF8	38	P38S	Cct	Tct	75	75	AY.103	0.000466
ORF8	38	P38S	Cct	Tct	75	75	B.1.526	0.001763
ORF8	38	P38P	ccT	ccC	73	74	B.1.1.7	0.000065
ORF8	38	P38P	ccT	ccA	1	74	B.1.1.7	0.000001
ORF8	38	P38L	cCt	cTt	70	70	AY.33	0.004674
ORF8	38	P38P	ccT	ccC	70	70	AY.42	0.002816
ORF8	38	P38S	Cct	Tct	69	69	AY.4.2	0.001497
ORF8	38	P38L	cCT	cTC	61	64	AY.100	0.002806
ORF8	38	P38L	cCt	cTt	3	64	AY.100	0.000138
ORF8	38	P38H	cCt	cAt	63	63	All	0.000012
ORF8	38	P38del1	ccT	cc-	55	61	All	0.000011
ORF8	38	P38del1	Cct	-ct	4	61	All	0.000001
ORF8	38	P38del1	CCt	-Tt	1	61	All	0
ORF8	38	P38del1	CCT	-NN	1	61	All	0
ORF8	38	P38del	CCT	---	60	60	AY.103	0.000373
ORF8	38	P38del	CCT	---	60	60	B.1.1.294	0.075949
ORF8	38	P38P	ccT	ccC	58	58	AY.111	0.010623
ORF8	38	P38L	cCt	cTt	55	56	AY.25	0.000331
ORF8	38	P38L	cCT	cTC	1	56	AY.25	0.000006
ORF8	38	P38S	Cct	Tct	56	56	AY.3	0.000557
ORF8	38	P38S	Cct	Tct	52	52	AY.25	0.000313
ORF8	38	P38S	Cct	Tct	51	51	B.1.2	0.000449
ORF8	38	P38S	Cct	Tct	51	51	Q.2	0.031288
ORF8	38	P38S	Cct	Tct	48	48	AY.33	0.003205
ORF8	38	P38P	ccT	ccC	48	48	AY.4	0.000075
ORF8	38	P38P	ccT	ccC	48	48	AY.99	0.050367
ORF8	38	P38P	ccT	ccC	45	45	AY.5.3	0.015182
ORF8	38	P38S	Cct	Tct	45	45	B.1.429	0.001059
ORF8	38	P38L	cCt	cTt	44	44	AY.3.1	0.003751
ORF8	38	P38L	cCt	cTt	44	44	Q.3	0.006381
ORF8	38	P38L	cCt	cTt	43	43	AY.43	0.000191
ORF8	38	P38S	Cct	Tct	42	42	B.1.1.99	1
ORF8	38	P38R	cCt	cGt	39	40	All	0.000007
ORF8	38	P38R	cCT	cGC	1	40	All	0
ORF8	38	P38L	cCt	cTt	40	40	AY.103	0.000248
ORF8	38	P38del	CCT	---	38	38	AY.29	0.000599
ORF8	38	P38P	ccT	ccC	38	38	AY.43	0.000168
ORF8	38	P38P	ccT	ccC	36	36	AY.13	0.005795
ORF8	38	P38L	cCt	cTt	36	36	AY.39	0.00089
ORF8	38	P38P	ccT	ccC	35	35	AY.90	0.023956
ORF8	38	P38del	CCT	---	35	35	B.1.243	0.002435
ORF8	38	P38T	Cct	Act	29	34	All	0.000006
ORF8	38	P38T	CcT	AcC	4	34	All	0.000001
ORF8	38	P38T	CcT	AcG	1	34	All	0
ORF8	38	P38S	Cct	Tct	33	33	AY.46.6	0.002383
ORF8	38	P38P	ccT	ccC	33	33	AY.69	0.00616
ORF8	38	P38del	CCT	---	33	33	B.1.1.222	0.006732
ORF8	38	P38del1	ccT	cc-	31	32	B.1.1.7	0.000028
ORF8	38	P38del1	Cct	-ct	1	32	B.1.1.7	0.000001
ORF8	38	P38P	ccT	ccC	31	31	AY.98.1	0.001501
ORF8	38	P38S	Cct	Tct	31	31	B.1.366	0.15122
ORF8	38	P38S	Cct	Tct	29	29	AY.102	0.000769
ORF8	38	P38S	Cct	Tct	29	29	AY.20	0.001127
ORF8	38	P38S	Cct	Tct	29	29	AY.45	0.003529
ORF8	38	P38L	cCt	cTt	29	29	B.1	0.000266
ORF8	38	P38L	cCt	cTt	29	29	B.1.2	0.000255
ORF8	38	P38P	ccT	ccC	28	28	AY.79	0.033898
ORF8	38	P38S	Cct	Tct	28	28	B.1.1	0.000508
ORF8	38	P38S	Cct	Tct	28	28	B.1.221	0.001989
ORF8	38	P38S	Cct	Tct	27	27	B.1.160	0.000842
ORF8	38	P38L	cCt	cTt	26	26	AY.110	0.00293
ORF8	38	P38P	ccT	ccC	26	26	AY.19	0.029647
ORF8	38	P38del	CCT	---	26	26	B.1.1	0.000472
ORF8	38	P38P	ccT	ccC	24	24	AY.23	0.001674
ORF8	38	P38S	Cct	Tct	24	24	AY.46	0.002498
ORF8	38	P38P	ccT	ccC	24	24	AY.78	0.03698
ORF8	38	P38P	ccT	ccC	23	23	AY.120	0.000855
ORF8	38	P38S	Cct	Tct	23	23	B.1.623	0.012339
ORF8	38	P38P	ccT	ccC	22	22	AY.110	0.002479
ORF8	38	P38del	CCT	---	22	22	AY.44	0.000134
ORF8	38	P38P	ccT	ccC	22	22	AY.88	0.019452
ORF8	38	P38del2	cCT	c--	15	21	All	0.000003
ORF8	38	P38del2	CCt	--t	6	21	All	0.000001
ORF8	38	P38P	ccT	ccC	20	20	AY.77	0.022548
ORF8	38	P38S	Cct	Tct	20	20	B.1.1.1	0.006534
ORF8	38	P38P	ccT	ccC	19	19	AY.5	0.000392
ORF8	38	P38P	ccT	ccC	19	19	B.1	0.000174
ORF8	38	P38P	ccT	ccC	18	18	AY.105	0.011576
ORF8	38	P38L	cCt	cTt	18	18	AY.119	0.000636
ORF8	38	P38L	cCt	cTt	18	18	AY.5	0.000372
ORF8	38	P38del	CCT	---	18	18	B	0.002301
ORF8	38	P38L	cCt	cTt	18	18	B.1.258	0.001198
ORF8	38	P38S	Cct	Tct	18	18	B.1.258.17	0.001871
ORF8	38	P38S	Cct	Tct	18	18	C.37	0.002089
ORF8	38	P38P	ccT	ccC	17	17	AY.119	0.0006
ORF8	38	P38P	ccT	ccC	15	17	AY.36	0.002223
ORF8	38	P38P	ccT	ccA	2	17	AY.36	0.000296
ORF8	38	P38P	ccT	ccC	17	17	AY.67	0.007892
ORF8	38	P38P	ccT	ccC	17	17	AY.95	0.012938
ORF8	38	P38L	cCt	cTt	16	16	AY.20	0.000622
ORF8	38	P38del	CCT	---	16	16	AY.3	0.000159
ORF8	38	P38P	ccT	ccC	16	16	AY.55	0.014679
ORF8	38	P38L	cCt	cTt	16	16	B.1.1	0.00029
ORF8	38	P38S	Cct	Tct	16	16	P.1	0.000252
ORF8	38	P38L	cCt	cTt	16	16	Q.1	0.002021
ORF8	38	P38L	cCt	cTt	15	15	AY.102	0.000398
ORF8	38	P38S	Cct	Tct	15	15	AY.3.1	0.001279
ORF8	38	P38P	ccT	ccC	13	15	AY.41	0.003821
ORF8	38	P38P	ccT	ccA	2	15	AY.41	0.000588
ORF8	38	P38P	ccT	ccC	15	15	AY.62	0.006536
ORF8	38	P38P	ccT	ccC	15	15	B	0.001917
ORF8	38	P38S	Cct	Tct	15	15	B.1.427	0.000757
ORF8	38	P38L	cCt	cTt	14	14	AY.29	0.000221
ORF8	38	P38L	cCt	cTt	14	14	AY.4.2	0.000304
ORF8	38	P38S	Cct	Tct	14	14	AY.44	0.000085
ORF8	38	P38P	ccT	ccC	14	14	AY.81	0.027888
ORF8	38	P38S	Cct	Tct	13	13	AY.29	0.000205
ORF8	38	P38P	ccT	ccC	13	13	AY.45	0.001582
ORF8	38	P38P	ccT	ccC	13	13	AY.46	0.001353
ORF8	38	P38P	ccT	ccC	13	13	AY.46.2	0.008259
ORF8	38	P38S	Cct	Tct	13	13	AY.5	0.000268
ORF8	38	P38del1	ccT	cc-	13	13	B.1.1.318	0.003923
ORF8	38	P38H	cCt	cAt	13	13	B.1.1.7	0.000012
ORF8	38	P38del	CCT	---	13	13	B.1.160	0.000405
ORF8	38	P38L	cCt	cTt	13	13	B.1.427	0.000656
ORF8	38	P38S	Cct	Tct	13	13	C.39	0.245283
ORF8	38	P38S	Cct	Tct	12	12	AY.119	0.000424
ORF8	38	P38L	cCt	cTt	11	12	AY.45	0.001339
ORF8	38	P38L	cCT	cTC	1	12	AY.45	0.000122
ORF8	38	P38P	ccT	ccC	11	11	AY.104	0.021825
ORF8	38	P38P	ccT	ccC	11	11	AY.106	0.003684
ORF8	38	P38P	ccT	ccC	11	11	AY.108	0.012128
ORF8	38	P38P	ccT	ccC	11	11	AY.32	0.005857
ORF8	38	P38P	ccT	ccC	11	11	AY.48	0.005116
ORF8	38	P38P	ccT	ccC	11	11	AY.93	0.003004
ORF8	38	P38S	Cct	Tct	11	11	B	0.001406
ORF8	38	P38T	Cct	Act	11	11	B.1.1.7	0.00001
ORF8	38	P38del	CCT	---	11	11	B.1.2	0.000097
ORF8	38	P38L	cCt	cTt	11	11	B.1.526	0.000259
ORF8	38	P38P	ccT	ccC	11	11	P.1	0.000173
ORF8	38	P38F	CCt	TTt	6	10	All	0.000001
ORF8	38	P38F	CCT	TTC	4	10	All	0.000001
ORF8	38	P38S	Cct	Tct	10	10	AY.26	0.000283
ORF8	38	P38P	ccT	ccC	10	10	AY.3	0.000099
ORF8	38	P38P	ccT	ccC	10	10	AY.47	0.000311
ORF8	38	P38P	ccT	ccC	10	10	AY.85	0.004272
ORF8	38	P38S	Cct	Tct	10	10	AY.9.2	0.000367
ORF8	38	P38S	Cct	Tct	10	10	AZ.3	0.015198
ORF8	38	P38R	cCt	cGt	10	10	B.1.1.7	0.000009
ORF8	38	P38P	ccT	ccC	9	9	AY.21	0.017078
ORF8	38	P38S	Cct	Tct	9	9	AY.39.1	0.000357
ORF8	38	P38L	cCt	cTt	9	9	AY.9.1	0.000754
ORF8	38	P38S	Cct	Tct	9	9	B.1.1.274	0.045455
ORF8	38	P38L	cCt	cTt	9	9	B.1.177	0.000119
ORF8	38	P38S	Cct	Tct	9	9	P.1.14	0.00043
ORF8	38	P38L	cCt	cTt	8	8	AY.117	0.000676
ORF8	38	P38L	cCt	cTt	8	8	AY.118	0.000501
ORF8	38	P38L	cCt	cTt	8	8	AY.26	0.000226
ORF8	38	P38P	ccT	ccC	8	8	AY.39.1	0.000317
ORF8	38	P38L	cCt	cTt	8	8	AY.42	0.000322
ORF8	38	P38L	cCt	cTt	8	8	B.1.1.222	0.001632
ORF8	38	P38R	cCt	cGt	8	8	B.1.1.28	0.00249
ORF8	38	P38del	CCT	---	8	8	B.1.1.284	0.000859
ORF8	38	P38L	cCt	cTt	8	8	B.1.160	0.00025
ORF8	38	P38del	CCT	---	8	8	B.1.240	0.001725
ORF8	38	P38del	CCT	---	8	8	P.1	0.000126
ORF8	38	P38V	CCt	GTt	7	7	All	0.000001
ORF8	38	P38A	Cct	Gct	7	7	All	0.000001
ORF8	38	P38P	ccT	ccC	7	7	AY.16	0.002658
ORF8	38	P38P	ccT	ccC	7	7	AY.20	0.000272
ORF8	38	P38P	ccT	ccC	7	7	AY.33	0.000467
ORF8	38	P38S	Cct	Tct	7	7	AY.39	0.000173
ORF8	38	P38L	cCt	cTt	7	7	AY.48	0.003256
ORF8	38	P38P	ccT	ccC	7	7	AY.83	0.012069
ORF8	38	P38P	ccT	ccC	7	7	AY.87	0.005828
ORF8	38	P38P	ccT	ccC	7	7	AY.9.2	0.000257
ORF8	38	P38S	Cct	Tct	7	7	AZ.1	0.006071
ORF8	38	P38del	CCT	---	7	7	B.1.1.265	0.022082
ORF8	38	P38S	Cct	Tct	7	7	B.1.1.33	0.002946
ORF8	38	P38S	Cct	Tct	7	7	B.1.1.519	0.000278
ORF8	38	P38del	CCT	---	7	7	B.1.1.519	0.000278
ORF8	38	P38S	Cct	Tct	7	7	B.1.177.12	0.001062
ORF8	38	P38L	cCt	cTt	7	7	B.1.351	0.000208
ORF8	38	P38del	CCT	---	7	7	B.1.36.16	0.009972
ORF8	38	P38L	cCt	cTt	7	7	B.1.438.1	0.000751
ORF8	38	P38del	CCT	---	7	7	B.1.617.2	0.000026
ORF8	38	P38del	CCT	---	7	7	B.1.628	0.002467
ORF8	38	P38L	cCt	cTt	7	7	C.37	0.000812
ORF8	38	P38del	CCT	---	7	7	P.1.14	0.000335
ORF8	38	P38S	Cct	Tct	7	7	P.1.15	0.001626
ORF8	38	P38F	CCT	TTC	4	6		0.222222
ORF8	38	P38F	CCt	TTt	2	6		0.111111
ORF8	38	P38P	ccT	ccC	6	6	AY.109	0.004438
ORF8	38	P38del	CCT	---	6	6	AY.29.1	0.001323
ORF8	38	P38P	ccT	ccC	6	6	AY.34.1	0.00306
ORF8	38	P38P	ccT	ccC	6	6	AY.54	0.000572
ORF8	38	P38S	Cct	Tct	6	6	AY.9.1	0.000502
ORF8	38	P38L	cCt	cTt	6	6	AY.9.2	0.00022
ORF8	38	P38S	Cct	Tct	6	6	AY.98.1	0.000291
ORF8	38	P38del	CCT	---	6	6	B.1	0.000055
ORF8	38	P38V	CCt	GTt	6	6	B.1	0.000055
ORF8	38	P38L	cCt	cTt	6	6	B.1.1.464	0.008837
ORF8	38	P38L	cCt	cTt	6	6	B.1.1.519	0.000238
ORF8	38	P38S	Cct	Tct	6	6	B.1.177.86	0.001101
ORF8	38	P38del	CCT	---	6	6	B.1.243.2	0.086957
ORF8	38	P38P	ccT	ccC	6	6	B.1.36	0.000875
ORF8	38	P38S	Cct	Tct	6	6	B.40	0.002186
ORF8	38	P38L	cCt	cTt	6	6	Q.8	0.000989
ORF8	38	P38S	Cct	Tct	6	6	Q.8	0.000989
ORF8	38	P38S	CcT	TcC	5	5	AY.100	0.00023
ORF8	38	P38P	ccT	ccC	5	5	AY.114	0.001156
ORF8	38	P38S	Cct	Tct	4	5	AY.117	0.000338
ORF8	38	P38S	CcT	TcC	1	5	AY.117	0.000085
ORF8	38	P38L	cCt	cTt	5	5	AY.120	0.000186
ORF8	38	P38P	ccT	ccC	5	5	AY.35	0.001165
ORF8	38	P38S	Cct	Tct	5	5	AY.36	0.000741
ORF8	38	P38S	Cct	Tct	5	5	AY.41	0.00147
ORF8	38	P38H	cCt	cAt	5	5	AY.43	0.000022
ORF8	38	P38L	cCt	cTt	5	5	AY.51	0.004545
ORF8	38	P38L	cCt	cTt	5	5	AY.54	0.000477
ORF8	38	P38P	ccT	ccC	5	5	AY.73	0.003327
ORF8	38	P38del	CCT	---	5	5	B.1.1.389	0.030303
ORF8	38	P38del2	cCT	c--	5	5	B.1.177.83	0.007407
ORF8	38	P38P	ccT	ccC	5	5	B.1.2	0.000044
ORF8	38	P38S	Cct	Tct	5	5	B.1.221.3	0.004167
ORF8	38	P38H	cCt	cAt	5	5	B.1.626	0.028571
ORF8	38	P38H	cCt	cAt	4	4	AY.103	0.000025
ORF8	38	P38P	ccT	ccC	4	4	AY.107	0.001864
ORF8	38	P38S	Cct	Tct	4	4	AY.120	0.000149
ORF8	38	P38L	cCt	cTt	4	4	AY.121	0.000541
ORF8	38	P38S	Cct	Tct	4	4	AY.23	0.000279
ORF8	38	P38S	Cct	Tct	4	4	AY.23.1	0.001669
ORF8	38	P38del	CCT	---	4	4	AY.25	0.000024
ORF8	38	P38P	ccT	ccC	4	4	AY.26	0.000113
ORF8	38	P38S	Cct	Tct	4	4	AY.34	0.000388
ORF8	38	P38del	CCT	---	4	4	AY.34	0.000388
ORF8	38	P38P	ccT	ccC	4	4	AY.4.5	0.00043
ORF8	38	P38P	ccT	ccC	4	4	AY.46.1	0.004107
ORF8	38	P38L	cCt	cTt	4	4	AY.6	0.000165
ORF8	38	P38S	Cct	Tct	4	4	AY.6	0.000165
ORF8	38	P38P	ccT	ccC	4	4	AY.70	0.000834
ORF8	38	P38S	Cct	Tct	4	4	AY.75	0.000224
ORF8	38	P38S	Cct	Tct	4	4	AY.9	0.00027
ORF8	38	P38T	Cct	Act	4	4	AY.9.1	0.000335
ORF8	38	P38del1	ccT	cc-	3	4	B.1	0.000027
ORF8	38	P38del1	Cct	-ct	1	4	B.1	0.000009
ORF8	38	P38del1	ccT	cc-	4	4	B.1.1	0.000073
ORF8	38	P38P	ccT	ccC	2	4	B.1.1	0.000036
ORF8	38	P38P	ccT	ccA	1	4	B.1.1	0.000018
ORF8	38	P38P	ccT	ccG	1	4	B.1.1	0.000018
ORF8	38	P38del	CCT	---	4	4	B.1.1.214	0.000222
ORF8	38	P38S	Cct	Tct	4	4	B.1.1.284	0.00043
ORF8	38	P38del	CCT	---	4	4	B.1.177	0.000053
ORF8	38	P38L	cCt	cTt	4	4	B.1.177.21	0.000306
ORF8	38	P38S	Cct	Tct	4	4	B.1.177.73	0.002265
ORF8	38	P38H	cCt	cAt	4	4	B.1.2	0.000035
ORF8	38	P38L	cCt	cTt	4	4	B.1.234	0.000528
ORF8	38	P38S	Cct	Tct	4	4	B.1.351.5	0.002398
ORF8	38	P38S	Cct	Tct	4	4	B.1.409	0.003125
ORF8	38	P38S	Cct	Tct	4	4	B.1.517	0.001708
ORF8	38	P38del	CCT	---	4	4	B.1.526	0.000094
ORF8	38	P38H	cCt	cAt	4	4	B.1.617.2	0.000015
ORF8	38	P38S	Cct	Tct	4	4	D.2	0.0003
ORF8	38	P38L	cCt	cTt	4	4	P.1.4	0.003906
ORF8	38	P38L	cCt	cTt	3	3	A	0.001161
ORF8	38	P38S	Cct	Tct	3	3	A	0.001161
ORF8	38	P38L	cCt	cTt	3	3	A.2.5.2	0.004717
ORF8	38	P38P	ccT	ccC	3	3	AY.1	0.001187
ORF8	38	P38S	Cct	Tct	3	3	AY.110	0.000338
ORF8	38	P38S	Cct	Tct	3	3	AY.118	0.000188
ORF8	38	P38R	cCt	cGt	3	3	AY.118	0.000188
ORF8	38	P38L	cCt	cTt	3	3	AY.12	0.000948
ORF8	38	P38P	ccT	ccC	3	3	AY.14	0.000264
ORF8	38	P38L	cCt	cTt	3	3	AY.23	0.000209
ORF8	38	P38del	CCT	---	3	3	AY.26	0.000085
ORF8	38	P38S	Cct	Tct	3	3	AY.29.1	0.000662
ORF8	38	P38R	cCt	cGt	3	3	AY.3	0.00003
ORF8	38	P38S	Cct	Tct	3	3	AY.30	0.001187
ORF8	38	P38P	ccT	ccC	3	3	AY.34	0.000291
ORF8	38	P38L	cCt	cTt	3	3	AY.36	0.000445
ORF8	38	P38L	cCt	cTt	3	3	AY.39.1	0.000119
ORF8	38	P38del	CCT	---	3	3	AY.43	0.000013
ORF8	38	P38P	ccT	ccC	3	3	AY.46.6	0.000217
ORF8	38	P38L	cCt	cTt	3	3	AY.5.4	0.00083
ORF8	38	P38P	ccT	ccC	3	3	AY.6	0.000123
ORF8	38	P38P	ccT	ccC	3	3	AY.60	0.002814
ORF8	38	P38S	Cct	Tct	3	3	AY.7	0.000588
ORF8	38	P38P	ccT	ccC	3	3	AY.75	0.000168
ORF8	38	P38P	ccT	ccC	3	3	AY.75.1	0.000541
ORF8	38	P38P	ccT	ccC	3	3	AY.91	0.002191
ORF8	38	P38S	Cct	Tct	3	3	AY.98	0.000237
ORF8	38	P38L	cCt	cTt	3	3	AY.98	0.000237
ORF8	38	P38L	cCt	cTt	3	3	AZ.1	0.002602
ORF8	38	P38H	cCt	cAt	3	3	B.1	0.000027
ORF8	38	P38R	cCt	cGt	3	3	B.1.1.25	0.001706
ORF8	38	P38S	Cct	Tct	3	3	B.1.1.28	0.000934
ORF8	38	P38S	Cct	Tct	3	3	B.1.1.315	0.025424
ORF8	38	P38L	cCt	cTt	3	3	B.1.1.33	0.001263
ORF8	38	P38S	Cct	Tct	3	3	B.1.1.52	0.036585
ORF8	38	P38L	cCt	cTt	3	3	B.1.1.63	0.001157
ORF8	38	P38del2	CCt	--t	2	3	B.1.1.7	0.000002
ORF8	38	P38del2	cCT	c--	1	3	B.1.1.7	0.000001
ORF8	38	P38S	Cct	Tct	3	3	B.1.157	0.008955
ORF8	38	P38S	Cct	Tct	3	3	B.1.177.81	0.000568
ORF8	38	P38del	CCT	---	3	3	B.1.22	0.003953
ORF8	38	P38L	cCt	cTt	3	3	B.1.221	0.000213
ORF8	38	P38L	cCt	cTt	3	3	B.1.242	0.056604
ORF8	38	P38S	Cct	Tct	3	3	B.1.258	0.0002
ORF8	38	P38S	Cct	Tct	3	3	B.1.258.14	0.002941
ORF8	38	P38S	Cct	Tct	3	3	B.1.36.18	0.001261
ORF8	38	P38S	Cct	Tct	3	3	B.1.36.38	0.004926
ORF8	38	P38del	CCT	---	3	3	B.1.429	0.000071
ORF8	38	P38S	Cct	Tct	3	3	B.1.438.1	0.000322
ORF8	38	P38S	Cct	Tct	3	3	B.1.470	0.004213
ORF8	38	P38del	CCT	---	3	3	B.1.509	0.002597
ORF8	38	P38S	Cct	Tct	3	3	B.1.525	0.000339
ORF8	38	P38H	cCt	cAt	3	3	B.1.526	0.000071
ORF8	38	P38S	Cct	Tct	3	3	B.1.533	0.028846
ORF8	38	P38S	Cct	Tct	3	3	B.1.541	0.013274
ORF8	38	P38L	cCt	cTt	3	3	B.1.575	0.00091
ORF8	38	P38L	cCt	cTt	3	3	D.2	0.000225
ORF8	38	P38L	cCt	cTt	3	3	P.1	0.000047
ORF8	38	P38del	CCT	---	3	3	P.1.1	0.000953
ORF8	38	P38del	CCT	---	3	3	P.1.17	0.000485
ORF8	38	P38S	Cct	Tct	3	3	Q.1	0.000379
ORF8	38	P38P	ccT	ccC	3	3	Q.8	0.000495
ORF8	38	P38del	CCT	---	2	2		0.111111
ORF8	38	P38S	Cct	Tct	2	2	A.2	0.001324
ORF8	38	P38S	Cct	Tct	2	2	A.2.5	0.000998
ORF8	38	P38L	cCt	cTt	2	2	A.28	0.005291
ORF8	38	P38L	cCt	cTt	2	2	A.5	0.003846
ORF8	38	P38C	CCt	TGt	2	2	All	0
ORF8	38	P38S	Cct	Tct	2	2	AY.113	0.000285
ORF8	38	P38L	cCt	cTt	2	2	AY.114	0.000462
ORF8	38	P38del	CCT	---	2	2	AY.118	0.000125
ORF8	38	P38L	cCt	cTt	2	2	AY.24	0.000862
ORF8	38	P38H	cCt	cAt	2	2	AY.3	0.00002
ORF8	38	P38S	Cct	Tct	2	2	AY.32	0.001065
ORF8	38	P38L	cCt	cTt	2	2	AY.38	0.000999
ORF8	38	P38R	cCt	cGt	2	2	AY.39.2	0.003082
ORF8	38	P38H	cCt	cAt	2	2	AY.4	0.000003
ORF8	38	P38R	cCt	cGt	2	2	AY.4	0.000003
ORF8	38	P38del2	CCt	--t	2	2	AY.4.2	0.000043
ORF8	38	P38P	ccT	ccC	2	2	AY.4.2	0.000043
ORF8	38	P38S	Cct	Tct	2	2	AY.4.2.1	0.000298
ORF8	38	P38P	ccT	ccC	2	2	AY.4.3	0.001684
ORF8	38	P38S	Cct	Tct	2	2	AY.4.5	0.000215
ORF8	38	P38S	Cct	Tct	2	2	AY.42	0.00008
ORF8	38	P38H	cCt	cAt	2	2	AY.44	0.000012
ORF8	38	P38L	cCt	cTt	2	2	AY.46	0.000208
ORF8	38	P38S	Cct	Tct	2	2	AY.46.1	0.002053
ORF8	38	P38L	cCt	cTt	2	2	AY.47	0.000062
ORF8	38	P38S	Cct	Tct	2	2	AY.47	0.000062
ORF8	38	P38del	CCT	---	2	2	AY.48	0.00093
ORF8	38	P38P	ccT	ccC	2	2	AY.53	0.000575
ORF8	38	P38S	Cct	Tct	2	2	AY.54	0.000191
ORF8	38	P38S	Cct	Tct	2	2	AY.67	0.000929
ORF8	38	P38P	ccT	ccC	2	2	AY.7.1	0.000225
ORF8	38	P38L	cCt	cTt	2	2	AY.7.1	0.000225
ORF8	38	P38S	Cct	Tct	2	2	AY.73	0.001331
ORF8	38	P38del	CCT	---	2	2	AY.84	0.000875
ORF8	38	P38S	Cct	Tct	2	2	AY.93	0.000546
ORF8	38	P38L	cCt	cTt	2	2	AY.98.1	0.000097
ORF8	38	P38S	Cct	Tct	2	2	AY.99.1	0.003106
ORF8	38	P38P	ccT	ccC	2	2	AY.99.2	0.000184
ORF8	38	P38S	Cct	Tct	2	2	AY.99.2	0.000184
ORF8	38	P38L	cCt	cTt	2	2	B.1.1.1	0.000653
ORF8	38	P38L	cCt	cTt	2	2	B.1.1.125	0.020408
ORF8	38	P38S	Cct	Tct	2	2	B.1.1.207	0.002364
ORF8	38	P38S	Cct	Tct	2	2	B.1.1.214	0.000111
ORF8	38	P38P	ccT	ccC	2	2	B.1.1.216	0.001781
ORF8	38	P38S	Cct	Tct	2	2	B.1.1.220	0.003717
ORF8	38	P38L	cCt	cTt	2	2	B.1.1.241	0.004141
ORF8	38	P38S	Cct	Tct	2	2	B.1.1.398	0.006452
ORF8	38	P38A	Cct	Gct	2	2	B.1.1.7	0.000002
ORF8	38	P38del	CCT	---	2	2	B.1.126	0.002551
ORF8	38	P38S	Cct	Tct	2	2	B.1.131	0.017544
ORF8	38	P38P	ccT	ccC	2	2	B.1.177	0.000026
ORF8	38	P38S	Cct	Tct	2	2	B.1.177.60	0.000437
ORF8	38	P38S	Cct	Tct	2	2	B.1.240	0.000431
ORF8	38	P38L	cCt	cTt	2	2	B.1.243	0.000139
ORF8	38	P38L	cCt	cTt	2	2	B.1.258.11	0.000793
ORF8	38	P38del	CCT	---	2	2	B.1.258.17	0.000208
ORF8	38	P38S	Cct	Tct	2	2	B.1.280	0.014286
ORF8	38	P38S	Cct	Tct	2	2	B.1.282	0.029851
ORF8	38	P38L	cCt	cTt	2	2	B.1.311	0.000549
ORF8	38	P38P	ccT	ccC	2	2	B.1.351	0.000059
ORF8	38	P38T	Cct	Act	2	2	B.1.351	0.000059
ORF8	38	P38H	cCt	cAt	2	2	B.1.351	0.000059
ORF8	38	P38L	cCt	cTt	2	2	B.1.36	0.000292
ORF8	38	P38del	CCT	---	2	2	B.1.36	0.000292
ORF8	38	P38T	Cct	Act	2	2	B.1.36	0.000292
ORF8	38	P38A	Cct	Gct	2	2	B.1.381	0.015625
ORF8	38	P38P	ccT	ccC	2	2	B.1.398	0.005952
ORF8	38	P38S	Cct	Tct	2	2	B.1.422	0.001625
ORF8	38	P38del	CCT	---	2	2	B.1.427	0.000101
ORF8	38	P38del	CCT	---	2	2	B.1.445	0.023529
ORF8	38	P38R	cCt	cGt	2	2	B.1.525	0.000226
ORF8	38	P38P	ccT	ccC	2	2	B.1.526	0.000047
ORF8	38	P38S	Cct	Tct	2	2	B.1.596	0.000174
ORF8	38	P38P	ccT	ccC	2	2	B.1.596	0.000174
ORF8	38	P38L	cCt	cTt	2	2	B.1.602	0.013072
ORF8	38	P38P	ccT	ccC	2	2	B.1.617.1	0.000258
ORF8	38	P38R	cCt	cGt	1	2	B.1.617.2	0.000004
ORF8	38	P38R	cCT	cGC	1	2	B.1.617.2	0.000004
ORF8	38	P38F	CCt	TTt	2	2	B.1.621	0.000177
ORF8	38	P38F	CCt	TTt	2	2	B.1.621.1	0.001012
ORF8	38	P38P	ccT	ccC	2	2	B.1.623	0.001073
ORF8	38	P38S	Cct	Tct	2	2	B.1.8	0.003945
ORF8	38	P38del	CCT	---	2	2	B.40	0.000729
ORF8	38	P38S	Cct	Tct	2	2	P.1.12	0.000968
ORF8	38	P38del	CCT	---	2	2	P.1.15	0.000465
ORF8	38	P38S	Cct	Tct	2	2	P.1.7	0.000639
ORF8	38	P38H	cCt	cAt	2	2	Q.8	0.00033
ORF8	38	P38T	Cct	Act	1	1		0.055556
ORF8	38	P38L	cCt	cTt	1	1	A.2	0.000662
ORF8	38	P38S	Cct	Tct	1	1	A.2.2	0.001689
ORF8	38	P38S	Cct	Tct	1	1	A.5	0.001923
ORF8	38	P38S	Cct	Tct	1	1	AD.1	0.004115
ORF8	38	P38L	cCt	cTt	1	1	AD.2	0.000219
ORF8	38	P38del	CCT	---	1	1	AE.4	0.043478
ORF8	38	P38S	Cct	Tct	1	1	AL.1	0.012987
ORF8	38	P38G	CCt	GGt	1	1	All	0
ORF8	38	P38Q	cCT	cAG	1	1	All	0
ORF8	38	P38S	Cct	Tct	1	1	AT.1	0.005128
ORF8	38	P38del	CCT	---	1	1	AU.3	0.00211
ORF8	38	P38del	CCT	---	1	1	AY.100	0.000046
ORF8	38	P38T	CcT	AcC	1	1	AY.100	0.000046
ORF8	38	P38L	cCT	cTC	1	1	AY.101	0.00049
ORF8	38	P38T	CcT	AcC	1	1	AY.102	0.000027
ORF8	38	P38del	CCT	---	1	1	AY.102	0.000027
ORF8	38	P38S	Cct	Tct	1	1	AY.105	0.000643
ORF8	38	P38L	cCt	cTt	1	1	AY.108	0.001103
ORF8	38	P38del	CCT	---	1	1	AY.108	0.001103
ORF8	38	P38L	cCT	cTC	1	1	AY.109	0.00074
ORF8	38	P38H	cCt	cAt	1	1	AY.110	0.000113
ORF8	38	P38S	Cct	Tct	1	1	AY.116.1	0.000311
ORF8	38	P38del1	ccT	cc-	1	1	AY.118	0.000063
ORF8	38	P38T	Cct	Act	1	1	AY.119	0.000035
ORF8	38	P38P	ccT	ccC	1	1	AY.12	0.000316
ORF8	38	P38H	cCt	cAt	1	1	AY.120.2.1	0.000498
ORF8	38	P38P	ccT	ccC	1	1	AY.121	0.000135
ORF8	38	P38S	Cct	Tct	1	1	AY.121	0.000135
ORF8	38	P38S	Cct	Tct	1	1	AY.14	0.000088
ORF8	38	P38S	Cct	Tct	1	1	AY.16	0.00038
ORF8	38	P38P	ccT	ccC	1	1	AY.16.1	0.00047
ORF8	38	P38S	Cct	Tct	1	1	AY.16.1	0.00047
ORF8	38	P38L	cCt	cTt	1	1	AY.2	0.000356
ORF8	38	P38S	Cct	Tct	1	1	AY.2	0.000356
ORF8	38	P38H	cCt	cAt	1	1	AY.20	0.000039
ORF8	38	P38L	cCt	cTt	1	1	AY.23.1	0.000417
ORF8	38	P38T	Cct	Act	1	1	AY.25	0.000006
ORF8	38	P38P	ccT	ccC	1	1	AY.27	0.000065
ORF8	38	P38P	ccT	ccC	1	1	AY.29	0.000016
ORF8	38	P38del2	cCT	c--	1	1	AY.3	0.00001
ORF8	38	P38T	Cct	Act	1	1	AY.3	0.00001
ORF8	38	P38H	cCt	cAt	1	1	AY.30	0.000396
ORF8	38	P38P	ccT	ccC	1	1	AY.30	0.000396
ORF8	38	P38R	cCt	cGt	1	1	AY.34	0.000097
ORF8	38	P38S	Cct	Tct	1	1	AY.35	0.000233
ORF8	38	P38P	ccT	ccC	1	1	AY.37	0.000316
ORF8	38	P38S	Cct	Tct	1	1	AY.38	0.000499
ORF8	38	P38H	cCt	cAt	1	1	AY.39	0.000025
ORF8	38	P38del2	CCt	--t	1	1	AY.4	0.000002
ORF8	38	P38A	Cct	Gct	1	1	AY.4	0.000002
ORF8	38	P38del1	CCT	-NN	1	1	AY.4	0.000002
ORF8	38	P38del	CCT	---	1	1	AY.4.2	0.000022
ORF8	38	P38S	Cct	Tct	1	1	AY.4.3	0.000842
ORF8	38	P38del	CCT	---	1	1	AY.4.4	0.000409
ORF8	38	P38del1	CCt	-Tt	1	1	AY.43	0.000004
ORF8	38	P38del2	cCT	c--	1	1	AY.44	0.000006
ORF8	38	P38R	cCt	cGt	1	1	AY.45	0.000122
ORF8	38	P38L	cCt	cTt	1	1	AY.46.4	0.000165
ORF8	38	P38S	Cct	Tct	1	1	AY.46.4	0.000165
ORF8	38	P38S	Cct	Tct	1	1	AY.46.5	0.000198
ORF8	38	P38L	cCt	cTt	1	1	AY.46.5	0.000198
ORF8	38	P38L	cCt	cTt	1	1	AY.46.6	0.000072
ORF8	38	P38H	cCt	cAt	1	1	AY.49	0.003195
ORF8	38	P38del	CCT	---	1	1	AY.5	0.000021
ORF8	38	P38S	Cct	Tct	1	1	AY.5.1	0.003759
ORF8	38	P38S	Cct	Tct	1	1	AY.5.3	0.000337
ORF8	38	P38S	Cct	Tct	1	1	AY.5.4	0.000277
ORF8	38	P38H	cCt	cAt	1	1	AY.5.4	0.000277
ORF8	38	P38P	ccT	ccC	1	1	AY.52	0.000814
ORF8	38	P38S	Cct	Tct	1	1	AY.53	0.000288
ORF8	38	P38P	ccT	ccC	1	1	AY.56	0.001605
ORF8	38	P38L	cCt	cTt	1	1	AY.57	0.000656
ORF8	38	P38P	ccT	ccC	1	1	AY.57	0.000656
ORF8	38	P38P	ccT	ccC	1	1	AY.58	0.000907
ORF8	38	P38S	Cct	Tct	1	1	AY.59	0.00053
ORF8	38	P38R	cCt	cGt	1	1	AY.6	0.000041
ORF8	38	P38P	ccT	ccC	1	1	AY.61	0.000105
ORF8	38	P38S	Cct	Tct	1	1	AY.61	0.000105
ORF8	38	P38S	Cct	Tct	1	1	AY.64	0.000595
ORF8	38	P38P	ccT	ccC	1	1	AY.66	0.00107
ORF8	38	P38del2	cCT	c--	1	1	AY.67	0.000464
ORF8	38	P38R	cCt	cGt	1	1	AY.67	0.000464
ORF8	38	P38A	Cct	Gct	1	1	AY.67	0.000464
ORF8	38	P38L	cCt	cTt	1	1	AY.67	0.000464
ORF8	38	P38V	CCt	GTt	1	1	AY.67	0.000464
ORF8	38	P38G	CCt	GGt	1	1	AY.67	0.000464
ORF8	38	P38S	CcT	TcC	1	1	AY.69	0.000187
ORF8	38	P38L	cCt	cTt	1	1	AY.7.2	0.000559
ORF8	38	P38S	Cct	Tct	1	1	AY.7.2	0.000559
ORF8	38	P38S	Cct	Tct	1	1	AY.71	0.000475
ORF8	38	P38P	ccT	ccC	1	1	AY.71	0.000475
ORF8	38	P38P	ccT	ccC	1	1	AY.72	0.001361
ORF8	38	P38P	ccT	ccC	1	1	AY.74	0.000116
ORF8	38	P38L	cCt	cTt	1	1	AY.75	0.000056
ORF8	38	P38S	Cct	Tct	1	1	AY.75.1	0.00018
ORF8	38	P38S	CcT	TcC	1	1	AY.77	0.001127
ORF8	38	P38P	ccT	ccC	1	1	AY.80	0.001129
ORF8	38	P38S	Cct	Tct	1	1	AY.81	0.001992
ORF8	38	P38P	ccT	ccC	1	1	AY.82	0.001357
ORF8	38	P38S	Cct	Tct	1	1	AY.87	0.000833
ORF8	38	P38L	cCt	cTt	1	1	AY.88	0.000884
ORF8	38	P38P	ccT	ccC	1	1	AY.89	0.004902
ORF8	38	P38L	cCt	cTt	1	1	AY.9	0.000068
ORF8	38	P38del	CCT	---	1	1	AY.9	0.000068
ORF8	38	P38P	ccT	ccC	1	1	AY.9	0.000068
ORF8	38	P38L	cCt	cTt	1	1	AY.92	0.000287
ORF8	38	P38S	Cct	Tct	1	1	AY.92	0.000287
ORF8	38	P38P	ccT	ccC	1	1	AY.96	0.002075
ORF8	38	P38S	Cct	Tct	1	1	AY.97	0.001701
ORF8	38	P38T	CcT	AcC	1	1	AY.98	0.000079
ORF8	38	P38del	CCT	---	1	1	AY.98.1	0.000048
ORF8	38	P38del2	cCT	c--	1	1	AY.99	0.001049
ORF8	38	P38S	Cct	Tct	1	1	AY.99	0.001049
ORF8	38	P38del	CCT	---	1	1	AZ.2	0.000821
ORF8	38	P38Q	cCT	cAG	1	1	B.1	0.000009
ORF8	38	P38T	Cct	Act	1	1	B.1	0.000009
ORF8	38	P38H	cCt	cAt	1	1	B.1.1	0.000018
ORF8	38	P38C	CCt	TGt	1	1	B.1.1	0.000018
ORF8	38	P38H	cCt	cAt	1	1	B.1.1.157	0.000913
ORF8	38	P38del	CCT	---	1	1	B.1.1.174	0.003378
ORF8	38	P38L	cCt	cTt	1	1	B.1.1.176	0.000439
ORF8	38	P38L	cCt	cTt	1	1	B.1.1.214	0.000055
ORF8	38	P38del2	cCT	c--	1	1	B.1.1.214	0.000055
ORF8	38	P38del	CCT	---	1	1	B.1.1.216	0.00089
ORF8	38	P38S	Cct	Tct	1	1	B.1.1.222	0.000204
ORF8	38	P38S	Cct	Tct	1	1	B.1.1.232	0.001815
ORF8	38	P38S	Cct	Tct	1	1	B.1.1.236	0.006897
ORF8	38	P38S	Cct	Tct	1	1	B.1.1.239	0.032258
ORF8	38	P38del	CCT	---	1	1	B.1.1.25	0.000569
ORF8	38	P38L	cCt	cTt	1	1	B.1.1.255	0.00303
ORF8	38	P38del1	ccT	cc-	1	1	B.1.1.269	0.001353
ORF8	38	P38L	cCt	cTt	1	1	B.1.1.277	0.000759
ORF8	38	P38del	CCT	---	1	1	B.1.1.28	0.000311
ORF8	38	P38P	ccT	ccA	1	1	B.1.1.294	0.001266
ORF8	38	P38del	CCT	---	1	1	B.1.1.297	0.002237
ORF8	38	P38L	cCt	cTt	1	1	B.1.1.305	0.003861
ORF8	38	P38S	Cct	Tct	1	1	B.1.1.311	0.000358
ORF8	38	P38S	Cct	Tct	1	1	B.1.1.317	0.000412
ORF8	38	P38del	CCT	---	1	1	B.1.1.354	0.004386
ORF8	38	P38S	Cct	Tct	1	1	B.1.1.369	0.000446
ORF8	38	P38del2	cCT	c--	1	1	B.1.1.37	0.000193
ORF8	38	P38del	CCT	---	1	1	B.1.1.37	0.000193
ORF8	38	P38S	Cct	Tct	1	1	B.1.1.372	0.000689
ORF8	38	P38L	cCt	cTt	1	1	B.1.1.372	0.000689
ORF8	38	P38L	cCt	cTt	1	1	B.1.1.420	0.001006
ORF8	38	P38del2	cCT	c--	1	1	B.1.1.519	0.00004
ORF8	38	P38S	Cct	Tct	1	1	B.1.1.526	0.003546
ORF8	38	P38S	Cct	Tct	1	1	B.1.1.63	0.000386
ORF8	38	P38del	CCT	---	1	1	B.1.1.63	0.000386
ORF8	38	P38C	CCt	TGt	1	1	B.1.1.7	0.000001
ORF8	38	P38T	CcT	AcG	1	1	B.1.1.70	0.000341
ORF8	38	P38L	cCt	cTt	1	1	B.1.1.70	0.000341
ORF8	38	P38S	Cct	Tct	1	1	B.1.1.83	0.00271
ORF8	38	P38L	cCt	cTt	1	1	B.1.1.89	0.006061
ORF8	38	P38S	Cct	Tct	1	1	B.1.108	0.005814
ORF8	38	P38L	cCt	cTt	1	1	B.1.124	0.007812
ORF8	38	P38P	ccT	ccC	1	1	B.1.126	0.001276
ORF8	38	P38S	Cct	Tct	1	1	B.1.140	0.018868
ORF8	38	P38S	Cct	Tct	1	1	B.1.147	0.000756
ORF8	38	P38H	cCt	cAt	1	1	B.1.160	0.000031
ORF8	38	P38L	cCt	cTt	1	1	B.1.160.16	0.000929
ORF8	38	P38S	Cct	Tct	1	1	B.1.167	0.007812
ORF8	38	P38P	ccT	ccC	1	1	B.1.170	0.00431
ORF8	38	P38T	Cct	Act	1	1	B.1.177	0.000013
ORF8	38	P38del1	Cct	-ct	1	1	B.1.177	0.000013
ORF8	38	P38del2	cCT	c--	1	1	B.1.177	0.000013
ORF8	38	P38R	cCt	cGt	1	1	B.1.177	0.000013
ORF8	38	P38S	Cct	Tct	1	1	B.1.177.16	0.000664
ORF8	38	P38L	cCt	cTt	1	1	B.1.177.17	0.000821
ORF8	38	P38L	cCt	cTt	1	1	B.1.177.19	0.001431
ORF8	38	P38H	cCt	cAt	1	1	B.1.177.21	0.000076
ORF8	38	P38S	Cct	Tct	1	1	B.1.177.33	0.001645
ORF8	38	P38L	cCt	cTt	1	1	B.1.177.44	0.000519
ORF8	38	P38S	Cct	Tct	1	1	B.1.177.51	0.004566
ORF8	38	P38L	cCt	cTt	1	1	B.1.177.51	0.004566
ORF8	38	P38S	Cct	Tct	1	1	B.1.177.54	0.000606
ORF8	38	P38del	CCT	---	1	1	B.1.177.63	0.002703
ORF8	38	P38S	Cct	Tct	1	1	B.1.177.7	0.000165
ORF8	38	P38del	CCT	---	1	1	B.1.177.7	0.000165
ORF8	38	P38P	ccT	ccC	1	1	B.1.177.73	0.000566
ORF8	38	P38L	cCt	cTt	1	1	B.1.177.73	0.000566
ORF8	38	P38S	Cct	Tct	1	1	B.1.177.82	0.000477
ORF8	38	P38del	CCT	---	1	1	B.1.177.83	0.001481
ORF8	38	P38del	CCT	---	1	1	B.1.195	0.005025
ORF8	38	P38P	ccT	ccA	1	1	B.1.199	0.004132
ORF8	38	P38A	Cct	Gct	1	1	B.1.2	0.000009
ORF8	38	P38del1	Cct	-ct	1	1	B.1.2	0.000009
ORF8	38	P38L	cCt	cTt	1	1	B.1.206	0.000816
ORF8	38	P38S	Cct	Tct	1	1	B.1.206	0.000816
ORF8	38	P38del	CCT	---	1	1	B.1.210	0.002132
ORF8	38	P38T	Cct	Act	1	1	B.1.221	0.000071
ORF8	38	P38S	Cct	Tct	1	1	B.1.232	0.000537
ORF8	38	P38S	Cct	Tct	1	1	B.1.234	0.000132
ORF8	38	P38L	cCt	cTt	1	1	B.1.240	0.000216
ORF8	38	P38del	CCT	---	1	1	B.1.258	0.000067
ORF8	38	P38S	Cct	Tct	1	1	B.1.258.11	0.000396
ORF8	38	P38del	CCT	---	1	1	B.1.258.12	0.007874
ORF8	38	P38P	ccT	ccC	1	1	B.1.258.17	0.000104
ORF8	38	P38L	cCt	cTt	1	1	B.1.258.17	0.000104
ORF8	38	P38L	cCt	cTt	1	1	B.1.270	0.005618
ORF8	38	P38S	Cct	Tct	1	1	B.1.311	0.000275
ORF8	38	P38P	ccT	ccC	1	1	B.1.311	0.000275
ORF8	38	P38S	Cct	Tct	1	1	B.1.319	0.003049
ORF8	38	P38S	Cct	Tct	1	1	B.1.324	0.001605
ORF8	38	P38L	cCt	cTt	1	1	B.1.324	0.001605
ORF8	38	P38S	Cct	Tct	1	1	B.1.336	0.002439
ORF8	38	P38del	CCT	---	1	1	B.1.351	0.00003
ORF8	38	P38del	CCT	---	1	1	B.1.351.2	0.000303
ORF8	38	P38P	ccT	ccC	1	1	B.1.36.18	0.00042
ORF8	38	P38del	CCT	---	1	1	B.1.36.29	0.000517
ORF8	38	P38L	cCt	cTt	1	1	B.1.36.8	0.001
ORF8	38	P38L	cCt	cTt	1	1	B.1.361	0.001289
ORF8	38	P38L	cCt	cTt	1	1	B.1.362	0.001541
ORF8	38	P38S	Cct	Tct	1	1	B.1.367	0.000792
ORF8	38	P38del	CCT	---	1	1	B.1.369	0.000285
ORF8	38	P38S	Cct	Tct	1	1	B.1.369	0.000285
ORF8	38	P38S	Cct	Tct	1	1	B.1.391	0.001127
ORF8	38	P38S	Cct	Tct	1	1	B.1.396	0.000706
ORF8	38	P38S	Cct	Tct	1	1	B.1.399	0.001934
ORF8	38	P38L	cCt	cTt	1	1	B.1.411	0.003704
ORF8	38	P38H	cCt	cAt	1	1	B.1.429	0.000024
ORF8	38	P38L	cCt	cTt	1	1	B.1.429.1	0.012048
ORF8	38	P38S	Cct	Tct	1	1	B.1.459	0.004082
ORF8	38	P38L	cCt	cTt	1	1	B.1.462	0.007246
ORF8	38	P38L	cCt	cTt	1	1	B.1.465	0.003802
ORF8	38	P38S	Cct	Tct	1	1	B.1.466.2	0.000391
ORF8	38	P38del	CCT	---	1	1	B.1.468	0.005714
ORF8	38	P38S	Cct	Tct	1	1	B.1.469	0.00361
ORF8	38	P38del	CCT	---	1	1	B.1.497	0.000315
ORF8	38	P38P	ccT	ccC	1	1	B.1.497	0.000315
ORF8	38	P38L	cCt	cTt	1	1	B.1.497	0.000315
ORF8	38	P38S	Cct	Tct	1	1	B.1.499	0.00105
ORF8	38	P38L	cCt	cTt	1	1	B.1.509	0.000866
ORF8	38	P38P	ccT	ccC	1	1	B.1.524	0.001406
ORF8	38	P38del	CCT	---	1	1	B.1.540	0.009709
ORF8	38	P38del	CCT	---	1	1	B.1.564	0.000426
ORF8	38	P38L	cCt	cTt	1	1	B.1.568	0.001111
ORF8	38	P38S	Cct	Tct	1	1	B.1.575	0.000303
ORF8	38	P38L	cCt	cTt	1	1	B.1.582	0.000491
ORF8	38	P38T	Cct	Act	1	1	B.1.588	0.00091
ORF8	38	P38S	Cct	Tct	1	1	B.1.589	0.007576
ORF8	38	P38L	cCt	cTt	1	1	B.1.595	0.000261
ORF8	38	P38S	Cct	Tct	1	1	B.1.595	0.000261
ORF8	38	P38T	Cct	Act	1	1	B.1.596	0.000087
ORF8	38	P38S	Cct	Tct	1	1	B.1.599	0.00365
ORF8	38	P38S	Cct	Tct	1	1	B.1.606	0.006024
ORF8	38	P38S	Cct	Tct	1	1	B.1.609	0.000479
ORF8	38	P38T	Cct	Act	1	1	B.1.617.1	0.000129
ORF8	38	P38L	cCt	cTt	1	1	B.1.617.1	0.000129
ORF8	38	P38del1	ccT	cc-	1	1	B.1.617.2	0.000004
ORF8	38	P38del2	CCt	--t	1	1	B.1.617.2	0.000004
ORF8	38	P38T	CcT	AcC	1	1	B.1.617.2	0.000004
ORF8	38	P38L	cCt	cTt	1	1	B.1.617.3	0.002985
ORF8	38	P38S	Cct	Tct	1	1	B.1.617.3	0.002985
ORF8	38	P38L	cCt	cTt	1	1	B.1.619.1	0.000641
ORF8	38	P38del	CCT	---	1	1	B.1.621	0.000089
ORF8	38	P38S	Cct	Tct	1	1	B.1.628	0.000352
ORF8	38	P38S	Cct	Tct	1	1	B.1.630	0.005236
ORF8	38	P38P	ccT	ccC	1	1	B.1.632	0.006711
ORF8	38	P38S	Cct	Tct	1	1	B.1.633	0.041667
ORF8	38	P38S	Cct	Tct	1	1	B.1.634	0.003425
ORF8	38	P38L	cCt	cTt	1	1	B.1.637	0.000073
ORF8	38	P38S	Cct	Tct	1	1	B.1.638	0.052632
ORF8	38	P38del	CCT	---	1	1	B.34	0.013699
ORF8	38	P38L	cCt	cTt	1	1	B.35	0.007812
ORF8	38	P38del	CCT	---	1	1	C.26	0.007353
ORF8	38	P38L	cCt	cTt	1	1	C.36.3	0.000567
ORF8	38	P38S	Cct	Tct	1	1	C.4	0.01
ORF8	38	P38del	CCT	---	1	1	M.3	0.076923
ORF8	38	P38del	CCT	---	1	1	N.3	0.005814
ORF8	38	P38del	CCT	---	1	1	N.6	0.007092
ORF8	38	P38del1	ccT	cc-	1	1	P.1	0.000016
ORF8	38	P38del2	cCT	c--	1	1	P.1	0.000016
ORF8	38	P38del	CCT	---	1	1	P.1.12	0.000484
ORF8	38	P38L	cCt	cTt	1	1	P.1.14	0.000048
ORF8	38	P38P	ccT	ccC	1	1	P.1.15	0.000232
ORF8	38	P38L	cCt	cTt	1	1	P.1.15	0.000232
ORF8	38	P38S	Cct	Tct	1	1	P.1.16	0.000374
ORF8	38	P38S	Cct	Tct	1	1	P.1.17	0.000162
ORF8	38	P38del	CCT	---	1	1	P.1.7	0.000319
ORF8	38	P38S	Cct	Tct	1	1	P.2	0.000187
ORF8	38	P38L	cCt	cTt	1	1	P.2	0.000187
ORF8	38	P38P	ccT	ccC	1	1	Q.1	0.000126
ORF8	38	P38S	Cct	Tct	1	1	Q.3	0.000145
ORF8	38	P38L	cCt	cTt	1	1	Q.4	0.000455
ORF8	38	P38S	Cct	Tct	1	1	Q.7	0.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.