CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 35 | D35Y | nonsyn | Gac | Tac | 5064 | 5055 | 0.998223 | 27996-27998 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 35 | D35Y | Gac | Tac | 5055 | 5064 | All | 0.000967 |
ORF8 | 35 | D35Y | Gac | Tac | 2205 | 2205 | B.1.1.7 | 0.001974 |
ORF8 | 35 | D35Y | Gac | Tac | 432 | 432 | B.1.177.24 | 0.559585 |
ORF8 | 35 | D35Y | Gac | Tac | 263 | 263 | AY.25 | 0.001582 |
ORF8 | 35 | D35Y | Gac | Tac | 222 | 222 | B.1.1.318 | 0.066989 |
ORF8 | 35 | D35Y | Gac | Tac | 168 | 176 | AY.4 | 0.000261 |
ORF8 | 35 | D35Y | Gac | Tac | 143 | 143 | B.1.1 | 0.002594 |
ORF8 | 35 | D35Y | Gac | Tac | 134 | 134 | B.1 | 0.001227 |
ORF8 | 35 | D35Y | Gac | Tac | 131 | 131 | B.1.617.2 | 0.000493 |
ORF8 | 35 | D35Y | Gac | Tac | 130 | 130 | B.1.427 | 0.006565 |
ORF8 | 35 | D35Y | Gac | Tac | 97 | 97 | AY.5 | 0.002003 |
ORF8 | 35 | D35Y | Gac | Tac | 93 | 93 | B.1.1.419 | 0.688889 |
ORF8 | 35 | D35Y | Gac | Tac | 84 | 84 | Q.1 | 0.010611 |
ORF8 | 35 | D35Y | Gac | Tac | 67 | 67 | B.1.160 | 0.00209 |
ORF8 | 35 | D35Y | Gac | Tac | 62 | 62 | B.1.177 | 0.000816 |
ORF8 | 35 | D35Y | Gac | Tac | 60 | 60 | B.1.526 | 0.00141 |
ORF8 | 35 | D35Y | Gac | Tac | 55 | 55 | C.37 | 0.006383 |
ORF8 | 35 | D35Y | Gac | Tac | 50 | 50 | AY.43 | 0.000222 |
ORF8 | 35 | D35Y | Gac | Tac | 41 | 41 | AY.6 | 0.001686 |
ORF8 | 35 | D35Y | Gac | Tac | 34 | 34 | B.1.240 | 0.007329 |
ORF8 | 35 | D35Y | Gac | Tac | 32 | 32 | B.1.2 | 0.000282 |
ORF8 | 35 | D35Y | Gac | Tac | 24 | 24 | B.1.351 | 0.000713 |
ORF8 | 35 | D35Y | Gac | Tac | 22 | 22 | AY.103 | 0.000137 |
ORF8 | 35 | D35Y | Gac | Tac | 22 | 22 | B.1.1.189 | 0.033283 |
ORF8 | 35 | D35Y | Gac | Tac | 20 | 20 | AY.44 | 0.000122 |
ORF8 | 35 | D35Y | Gac | Tac | 20 | 20 | Q.8 | 0.003298 |
ORF8 | 35 | D35Y | Gac | Tac | 19 | 19 | Q.3 | 0.002756 |
ORF8 | 35 | D35Y | Gac | Tac | 18 | 18 | AY.102 | 0.000477 |
ORF8 | 35 | D35Y | Gac | Tac | 18 | 18 | AY.23 | 0.001255 |
ORF8 | 35 | D35Y | Gac | Tac | 18 | 18 | B.1.429 | 0.000424 |
ORF8 | 35 | D35Y | Gac | Tac | 16 | 16 | AY.33 | 0.001068 |
ORF8 | 35 | D35Y | Gac | Tac | 12 | 12 | AY.119 | 0.000424 |
ORF8 | 35 | D35Y | Gac | Tac | 11 | 11 | P.1 | 0.000173 |
ORF8 | 35 | D35Y | Gac | Tac | 10 | 10 | AY.120 | 0.000372 |
ORF8 | 35 | D35Y | Gac | Tac | 10 | 10 | B.1.177.44 | 0.005189 |
ORF8 | 35 | D35Y | Gac | Tac | 9 | 9 | AY.39 | 0.000222 |
ORF8 | 35 | D35Y | Gac | Tac | 9 | 9 | B.1.1.193 | 1 |
ORF8 | 35 | D35Y | Gac | Tac | 9 | 9 | B.1.560 | 0.041667 |
ORF8 | 35 | D35Y | Gac | Tac | 8 | 8 | AY.3 | 0.00008 |
ORF8 | 35 | D35Y | Gac | Tac | 8 | 8 | AY.7 | 0.001568 |
ORF8 | 35 | D35Y | Gac | Tac | 7 | 7 | B.1.1.519 | 0.000278 |
ORF8 | 35 | D35Y | Gac | Tac | 7 | 7 | B.1.177.79 | 0.016393 |
ORF8 | 35 | D35Y | Gac | Tac | 7 | 7 | Q.4 | 0.003183 |
ORF8 | 35 | D35Y | Gac | Tac | 7 | 7 | Q.7 | 0.007778 |
ORF8 | 35 | D35Y | Gac | Tac | 6 | 6 | A | 0.002322 |
ORF8 | 35 | D35Y | Gac | Tac | 6 | 6 | AY.118 | 0.000376 |
ORF8 | 35 | D35Y | Gac | Tac | 6 | 6 | AY.4.2 | 0.00013 |
ORF8 | 35 | D35Y | Gac | Tac | 6 | 6 | B.1.466.2 | 0.002347 |
ORF8 | 35 | D35Y | Gac | Tac | 6 | 6 | B.1.468 | 0.034286 |
ORF8 | 35 | D35Y | Gac | Tac | 5 | 5 | AY.26 | 0.000142 |
ORF8 | 35 | D35Y | Gac | Tac | 5 | 5 | B.1.36.1 | 0.005701 |
ORF8 | 35 | D35Y | Gac | Tac | 5 | 5 | B.1.369 | 0.001426 |
ORF8 | 35 | D35Y | Gac | Tac | 4 | 4 | A.2.4 | 0.013468 |
ORF8 | 35 | D35Y | Gac | Tac | 4 | 4 | AY.117 | 0.000338 |
ORF8 | 35 | D35Y | Gac | Tac | 4 | 4 | AY.20 | 0.000155 |
ORF8 | 35 | D35Y | Gac | Tac | 4 | 4 | AY.39.1 | 0.000158 |
ORF8 | 35 | D35Y | Gac | Tac | 4 | 4 | AY.9.2 | 0.000147 |
ORF8 | 35 | D35Y | Gac | Tac | 4 | 4 | B.1.362 | 0.006163 |
ORF8 | 35 | D35Y | Gac | Tac | 4 | 4 | C.37.1 | 0.010471 |
ORF8 | 35 | D35Y | Gac | Tac | 4 | 4 | P.7 | 0.017467 |
ORF8 | 35 | D35Y | Gac | Tac | 3 | 3 | AY.29 | 0.000047 |
ORF8 | 35 | D35Y | Gac | Tac | 3 | 3 | AY.34 | 0.000291 |
ORF8 | 35 | D35Y | Gac | Tac | 3 | 3 | AY.35 | 0.000699 |
ORF8 | 35 | D35Y | Gac | Tac | 3 | 3 | AY.98 | 0.000237 |
ORF8 | 35 | D35Y | Gac | Tac | 3 | 3 | B.1.1.232 | 0.005445 |
ORF8 | 35 | D35Y | Gac | Tac | 3 | 3 | B.1.1.25 | 0.001706 |
ORF8 | 35 | D35Y | Gac | Tac | 3 | 3 | B.1.1.28 | 0.000934 |
ORF8 | 35 | D35Y | Gac | Tac | 3 | 3 | B.1.1.33 | 0.001263 |
ORF8 | 35 | D35Y | Gac | Tac | 3 | 3 | B.1.13 | 0.007126 |
ORF8 | 35 | D35Y | Gac | Tac | 3 | 3 | B.1.234 | 0.000396 |
ORF8 | 35 | D35Y | Gac | Tac | 3 | 3 | B.1.243 | 0.000209 |
ORF8 | 35 | D35Y | Gac | Tac | 3 | 3 | B.1.258 | 0.0002 |
ORF8 | 35 | D35Y | Gac | Tac | 3 | 3 | B.1.516 | 0.005871 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | AY.106 | 0.00067 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | AY.116 | 0.000574 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | AY.27 | 0.000129 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | AY.45 | 0.000243 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | AY.54 | 0.000191 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | AY.55 | 0.001835 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | AY.74 | 0.000231 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | AZ.3 | 0.00304 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | B.1.1.135 | 0.00939 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | B.1.1.214 | 0.000111 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | B.1.177.60 | 0.000437 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | B.1.177.7 | 0.00033 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | B.1.177.87 | 0.001456 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | B.1.239 | 0.002442 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | B.1.399 | 0.003868 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | B.1.466 | 0.046512 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | B.1.525 | 0.000226 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | B.1.575 | 0.000607 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | B.1.576 | 0.001813 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | B.1.596 | 0.000174 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | B.1.621.1 | 0.001012 |
ORF8 | 35 | D35Y | Gac | Tac | 2 | 2 | P.2 | 0.000373 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | 0.055556 | |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | A.2 | 0.000662 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.116.1 | 0.000311 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.120.1 | 0.000321 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.121 | 0.000135 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.21 | 0.001898 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.23.1 | 0.000417 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.34.1 | 0.00051 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.4.4 | 0.000409 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.42 | 0.00004 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.46 | 0.000104 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.48 | 0.000465 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.61 | 0.000105 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.62 | 0.000436 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.68 | 0.000274 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.72 | 0.001361 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.73 | 0.000665 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.75.1 | 0.00018 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.84 | 0.000437 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.85 | 0.000427 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.88 | 0.000884 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.9.1 | 0.000084 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AY.93 | 0.000273 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AZ.2 | 0.000821 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | AZ.5 | 0.003509 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B | 0.000128 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.176 | 0.000439 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.222 | 0.000204 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.269 | 0.001353 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.27 | 0.00565 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.277 | 0.000759 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.282 | 0.011628 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.284 | 0.000107 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.289 | 0.002083 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.317 | 0.000412 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.348 | 0.000796 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.416 | 0.000905 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.486 | 0.001577 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.50 | 0.000679 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.517 | 0.006803 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.525 | 0.005464 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.54 | 0.003021 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.1.70 | 0.000341 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.104 | 0.00369 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.110.3 | 0.000718 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.111 | 0.001175 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.160.16 | 0.000929 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.177.21 | 0.000076 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.177.54 | 0.000606 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.177.6 | 0.000977 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.177.61 | 0.043478 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.206 | 0.000816 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.22 | 0.001318 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.258.17 | 0.000104 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.260 | 0.003344 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.349 | 0.000715 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.36 | 0.000146 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.36.19 | 0.009259 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.36.22 | 0.001208 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.36.29 | 0.000517 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.36.37 | 0.002778 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.36.8 | 0.001 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.375 | 0.00082 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.416 | 0.001269 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.462 | 0.007246 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.491 | 0.052632 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.492 | 0.007042 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.497 | 0.000315 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.499 | 0.00105 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.517 | 0.000427 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.617.1 | 0.000129 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.620 | 0.000946 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.637 | 0.000073 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.639 | 0.021739 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | B.1.78 | 0.008547 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | C.36 | 0.000911 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | D.2 | 0.000075 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | P.1.14 | 0.000048 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | P.1.15 | 0.000232 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | P.1.4 | 0.000977 |
ORF8 | 35 | D35Y | Gac | Tac | 1 | 1 | P.6 | 0.003145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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