CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 35

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF835D35YnonsynGacTac506450550.99822327996-27998
ORF835D35YnonsynGaCTaT506490.0017772527996-27998
ORF835D35DsyngaCgaT33343334127996-27998
ORF835D35deldelGAC---581581127996-27998
ORF835D35NnonsynGacAac4854840.99793827996-27998
ORF835D35NnonsynGaCAaT48510.0020618627996-27998
ORF835D35GnonsyngAcgGc119119127996-27998
ORF835D35EnonsyngaCgaA68640.94117627996-27998
ORF835D35EnonsyngaCgaG6840.058823527996-27998
ORF835D35HnonsynGacCac5353127996-27998
ORF835D35VnonsyngAcgTc3131127996-27998
ORF835D35del1delGac-ac24130.54166727996-27998
ORF835D35del1delgaCga-2480.33333327996-27998
ORF835D35del1delgAcg-c2420.083333327996-27998
ORF835D35del1delGAC-NN2410.041666727996-27998
ORF835D35AnonsyngAcgCc2323127996-27998
ORF835D35del2delgACg--1090.927996-27998
ORF835D35del2delGAC--Y1010.127996-27998
ORF835D35FnonsynGACTTT210.527996-27998
ORF835D35FnonsynGAcTTc210.527996-27998
ORF835D35RnonsynGACCGG11127996-27998
ORF835D35MnonsynGACATG11127996-27998

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF835D35YGacTac50555064All0.000967
ORF835D35YGaCTaT95064All0.000002
ORF835D35DgaCgaT33343334All0.000638
ORF835D35YGacTac22052205B.1.1.70.001974
ORF835D35DgaCgaT12431243B.1.4090.971094
ORF835D35delGAC---581581All0.000111
ORF835D35NGacAac484485All0.000093
ORF835D35NGaCAaT1485All0
ORF835D35YGacTac432432B.1.177.240.559585
ORF835D35NGacAac324324B.1.1.70.00029
ORF835D35YGacTac263263AY.250.001582
ORF835D35YGacTac222222B.1.1.3180.066989
ORF835D35YGacTac168176AY.40.000261
ORF835D35YGaCTaT8176AY.40.000012
ORF835D35YGacTac143143B.1.10.002594
ORF835D35YGacTac134134B.10.001227
ORF835D35YGacTac131131B.1.617.20.000493
ORF835D35DgaCgaT130130B.1.1.5190.005162
ORF835D35YGacTac130130B.1.4270.006565
ORF835D35DgaCgaT121121B.6.81
ORF835D35GgAcgGc119119All0.000023
ORF835D35DgaCgaT110110B.1.617.20.000414
ORF835D35DgaCgaT106106B.1.1600.003306
ORF835D35delGAC---102102B.1.1.70.000091
ORF835D35YGacTac9797AY.50.002003
ORF835D35DgaCgaT9494AY.40.000146
ORF835D35YGacTac9393B.1.1.4190.688889
ORF835D35DgaCgaT8989AY.1030.000553
ORF835D35DgaCgaT8989B.1.1.70.00008
ORF835D35DgaCgaT8585AY.440.000517
ORF835D35YGacTac8484Q.10.010611
ORF835D35DgaCgaT8181B.1.5250.009166
ORF835D35delGAC---7474AY.40.000115
ORF835D35DgaCgaT6969B.10.000632
ORF835D35EgaCgaA6468All0.000012
ORF835D35EgaCgaG468All0.000001
ORF835D35YGacTac6767B.1.1600.00209
ORF835D35YGacTac6262B.1.1770.000816
ORF835D35DgaCgaT6161AY.260.001727
ORF835D35YGacTac6060B.1.5260.00141
ORF835D35YGacTac5555C.370.006383
ORF835D35HGacCac5353All0.00001
ORF835D35YGacTac5050AY.430.000222
ORF835D35DgaCgaT4646B.1.160.310.370968
ORF835D35DgaCgaT4141AY.430.000182
ORF835D35YGacTac4141AY.60.001686
ORF835D35delGAC---3838AY.290.000599
ORF835D35DgaCgaT3737B.1.3510.0011
ORF835D35delGAC---3535AY.430.000155
ORF835D35YGacTac3434B.1.2400.007329
ORF835D35delGAC---3333B.1.1.2220.006732
ORF835D35delGAC---3333B.1.2430.002296
ORF835D35YGacTac3232B.1.20.000282
ORF835D35VgAcgTc3131All0.000006
ORF835D35DgaCgaT3030AY.1000.00138
ORF835D35DgaCgaT3030AY.250.00018
ORF835D35DgaCgaT3030AY.390.000741
ORF835D35delGAC---2929AY.1030.00018
ORF835D35DgaCgaT2929B.1.5610.011513
ORF835D35DgaCgaT2626B.1.1.4340.009062
ORF835D35del1Gac-ac1324All0.000002
ORF835D35del1gaCga-824All0.000002
ORF835D35del1gAcg-c224All0
ORF835D35del1GAC-NN124All0
ORF835D35DgaCgaT2424AY.1020.000636
ORF835D35YGacTac2424B.1.3510.000713
ORF835D35NGacAac2424B.1.3510.000713
ORF835D35AgAcgCc2323All0.000004
ORF835D35DgaCgaT2222A0.008514
ORF835D35YGacTac2222AY.1030.000137
ORF835D35delGAC---2222B.1.10.000399
ORF835D35DgaCgaT2222B.1.10.000399
ORF835D35YGacTac2222B.1.1.1890.033283
ORF835D35EgaCgaA2222B.1.1.3170.009057
ORF835D35DgaCgaT2222B.1.6320.147651
ORF835D35DgaCgaT2121B.1.177.810.003976
ORF835D35NGacAac2121Q.80.003463
ORF835D35YGacTac2020AY.440.000122
ORF835D35DgaCgaT2020B.1.1770.000263
ORF835D35DgaCgaT2020B.60.018198
ORF835D35YGacTac2020Q.80.003298
ORF835D35DgaCgaT1919AY.360.002816
ORF835D35GgAcgGc1919AY.40.00003
ORF835D35YGacTac1919Q.30.002756
ORF835D35YGacTac1818AY.1020.000477
ORF835D35YGacTac1818AY.230.001255
ORF835D35delGAC---1818B0.002301
ORF835D35VgAcgTc1818B.1.1.2220.003672
ORF835D35DgaCgaT1818B.1.20.000158
ORF835D35YGacTac1818B.1.4290.000424
ORF835D35GgAcgGc1717B.1.1600.00053
ORF835D35YGacTac1616AY.330.001068
ORF835D35DgaCgaT1616B.1.3750.013115
ORF835D35DgaCgaT1616B.1.617.10.002063
ORF835D35DgaCgaT1515AY.1190.00053
ORF835D35NGacAac1415AY.40.000022
ORF835D35NGaCAaT115AY.40.000002
ORF835D35AgAcgCc1515B.1.1770.000198
ORF835D35DgaCgaT1414AY.30.000139
ORF835D35DgaCgaT1414B.1.1.1920.032333
ORF835D35DgaCgaT1414B.1.1.630.005401
ORF835D35DgaCgaT1414B.1.2360.028747
ORF835D35DgaCgaT1313B.1.1.2210.131313
ORF835D35DgaCgaT1313B.1.2340.001715
ORF835D35YGacTac1212AY.1190.000424
ORF835D35DgaCgaT1212AY.450.00146
ORF835D35DgaCgaT1212B.1.1.2220.002448
ORF835D35NGacAac1212B.1.438.10.001287
ORF835D35GgAcgGc1212B.1.5260.000282
ORF835D35DgaCgaT1111AY.140.000968
ORF835D35DgaCgaT1111AY.330.000735
ORF835D35delGAC---1111AY.4.20.000239
ORF835D35GgAcgGc1111B.1.10.0002
ORF835D35delGAC---1111B.1.1600.000343
ORF835D35YGacTac1111P.10.000173
ORF835D35DgaCgaT1111Q.10.00139
ORF835D35del2gACg--910All0.000002
ORF835D35del2GAC--Y110All0
ORF835D35YGacTac1010AY.1200.000372
ORF835D35EgaCgaA1010B.1.1.2160.008905
ORF835D35YGacTac1010B.1.177.440.005189
ORF835D35del2gACg--99AY.30.00009
ORF835D35YGacTac99AY.390.000222
ORF835D35DgaCgaT99AY.460.000937
ORF835D35HGacCac99AY.9.10.000754
ORF835D35DgaCgaT99B0.00115
ORF835D35EgaCgaA59B.1.10.000091
ORF835D35EgaCgaG49B.1.10.000073
ORF835D35YGacTac99B.1.1.1931
ORF835D35YGacTac99B.1.5600.041667
ORF835D35delGAC---99B.1.617.20.000034
ORF835D35YGacTac88AY.30.00008
ORF835D35DgaCgaT88AY.370.002528
ORF835D35YGacTac88AY.70.001568
ORF835D35GgAcgGc88AY.900.005476
ORF835D35DgaCgaT88AY.930.002185
ORF835D35delGAC---88B.1.1.2840.000859
ORF835D35DgaCgaT88B.1.177.620.009535
ORF835D35DgaCgaT88B.1.177.750.008325
ORF835D35DgaCgaT88B.1.2210.000568
ORF835D35DgaCgaT88B.1.4270.000404
ORF835D35DgaCgaT77AY.200.000272
ORF835D35HGacCac77AY.250.000042
ORF835D35DgaCgaT77AY.39.10.000277
ORF835D35del1Gac-ac67B.10.000055
ORF835D35del1gaCga-17B.10.000009
ORF835D35delGAC---77B.1.1.2650.022082
ORF835D35DgaCgaT77B.1.1.4330.009972
ORF835D35YGacTac77B.1.1.5190.000278
ORF835D35YGacTac77B.1.177.790.016393
ORF835D35DgaCgaT77B.1.3490.005004
ORF835D35delGAC---77B.1.36.160.009972
ORF835D35GgAcgGc77B.1.617.20.000026
ORF835D35delGAC---77P.10.00011
ORF835D35delGAC---77P.1.140.000335
ORF835D35YGacTac77Q.40.003183
ORF835D35YGacTac77Q.70.007778
ORF835D35delGAC---660.333333
ORF835D35YGacTac66A0.002322
ORF835D35YGacTac66AY.1180.000376
ORF835D35NGacAac66AY.250.000036
ORF835D35delGAC---66AY.29.10.001323
ORF835D35delGAC---66AY.30.00006
ORF835D35YGacTac66AY.4.20.00013
ORF835D35DgaCgaT66B.1.1.2160.005343
ORF835D35GgAcgGc66B.1.1.70.000005
ORF835D35DgaCgaT66B.1.1110.007051
ORF835D35NGacAac66B.1.20.000053
ORF835D35delGAC---66B.1.20.000053
ORF835D35DgaCgaT66B.1.2430.000418
ORF835D35delGAC---66B.1.243.20.086957
ORF835D35YGacTac66B.1.466.20.002347
ORF835D35YGacTac66B.1.4680.034286
ORF835D35NGacAac66B.1.617.20.000023
ORF835D35DgaCgaT66P.20.00112
ORF835D35NGacAac55AD.20.001095
ORF835D35NGacAac55AY.1030.000031
ORF835D35YGacTac55AY.260.000142
ORF835D35DgaCgaT55AY.4.20.000108
ORF835D35DgaCgaT55AY.50.000103
ORF835D35DgaCgaT55B.1.1.280.001556
ORF835D35DgaCgaT55B.1.1.3180.001509
ORF835D35DgaCgaT55B.1.1.330.002104
ORF835D35delGAC---55B.1.1.3890.030303
ORF835D35GgAcgGc55B.1.36.10.005701
ORF835D35YGacTac55B.1.36.10.005701
ORF835D35YGacTac55B.1.3690.001426
ORF835D35DgaCgaT55B.1.4290.000118
ORF835D35DgaCgaT55B.1.4990.005252
ORF835D35del1Gac-ac55B.1.617.20.000019
ORF835D35DgaCgaT55C.20.080645
ORF835D35NGacAac55P.10.000079
ORF835D35NGacAac55P.1.170.000809
ORF835D35YGacTac44A.2.40.013468
ORF835D35DgaCgaT44A.30.008386
ORF835D35YGacTac44AY.1170.000338
ORF835D35YGacTac44AY.200.000155
ORF835D35delGAC---44AY.250.000024
ORF835D35delGAC---44AY.340.000388
ORF835D35YGacTac44AY.39.10.000158
ORF835D35delGAC---44AY.440.000024
ORF835D35NGacAac44AY.50.000083
ORF835D35delGAC---44AY.50.000083
ORF835D35YGacTac44AY.9.20.000147
ORF835D35DgaCgaT44AY.98.10.000194
ORF835D35delGAC---44B.10.000037
ORF835D35DgaCgaT44B.1.1.2910.00297
ORF835D35HGacCac44B.1.1.3260.007042
ORF835D35DgaCgaT44B.1.1.3260.007042
ORF835D35NGacAac44B.1.1.5190.000159
ORF835D35DgaCgaT44B.1.1390.002933
ORF835D35delGAC---44B.1.1770.000053
ORF835D35NGacAac44B.1.1770.000053
ORF835D35DgaCgaT44B.1.177.730.002265
ORF835D35DgaCgaT44B.1.2370.0199
ORF835D35DgaCgaT44B.1.36.10.004561
ORF835D35YGacTac44B.1.3620.006163
ORF835D35DgaCgaT44C.330.235294
ORF835D35YGacTac44C.37.10.010471
ORF835D35DgaCgaT44D.20.0003
ORF835D35YGacTac44P.70.017467
ORF835D35DgaCgaT33AY.10.001187
ORF835D35NGacAac33AY.1020.00008
ORF835D35DgaCgaT33AY.1170.000254
ORF835D35DgaCgaT33AY.1210.000406
ORF835D35DgaCgaT33AY.130.000483
ORF835D35DgaCgaT33AY.230.000209
ORF835D35YGacTac33AY.290.000047
ORF835D35YGacTac33AY.340.000291
ORF835D35YGacTac33AY.350.000699
ORF835D35GgAcgGc33AY.430.000013
ORF835D35del1gaCga-33AY.440.000018
ORF835D35DgaCgaT33AY.750.000168
ORF835D35DgaCgaT33AY.75.10.000541
ORF835D35DgaCgaT33AY.940.001328
ORF835D35YGacTac33AY.980.000237
ORF835D35EgaCgaA33B.10.000027
ORF835D35VgAcgTc33B.10.000027
ORF835D35NGacAac33B.1.10.000054
ORF835D35delGAC---33B.1.1.2140.000166
ORF835D35YGacTac33B.1.1.2320.005445
ORF835D35DgaCgaT33B.1.1.250.001706
ORF835D35YGacTac33B.1.1.250.001706
ORF835D35YGacTac33B.1.1.280.000934
ORF835D35DgaCgaT33B.1.1.2840.000322
ORF835D35DgaCgaT33B.1.1.3060.001315
ORF835D35YGacTac33B.1.1.330.001263
ORF835D35DgaCgaT33B.1.1.3690.001339
ORF835D35DgaCgaT33B.1.1.3800.029412
ORF835D35DgaCgaT33B.1.1.50.025
ORF835D35DgaCgaT33B.1.1.500.002037
ORF835D35delGAC---33B.1.1.5190.000119
ORF835D35VgAcgTc33B.1.1.70.000003
ORF835D35EgaCgaA33B.1.1.70.000003
ORF835D35HGacCac33B.1.1.70.000003
ORF835D35YGacTac33B.1.130.007126
ORF835D35AgAcgCc33B.1.177.770.002179
ORF835D35YGacTac33B.1.2340.000396
ORF835D35YGacTac33B.1.2430.000209
ORF835D35YGacTac33B.1.2580.0002
ORF835D35DgaCgaT33B.1.2580.0002
ORF835D35DgaCgaT33B.1.3110.000824
ORF835D35DgaCgaT33B.1.3960.002117
ORF835D35DgaCgaT33B.1.4000.001287
ORF835D35delGAC---33B.1.4290.000071
ORF835D35delGAC---33B.1.5090.002597
ORF835D35YGacTac33B.1.5160.005871
ORF835D35HGacCac33B.1.617.20.000011
ORF835D35DgaCgaT33B.1.6210.000266
ORF835D35DgaCgaT33B.1.6230.001609
ORF835D35DgaCgaT33B.6.60.002667
ORF835D35DgaCgaT33C.370.000348
ORF835D35DgaCgaT33P.10.000047
ORF835D35delGAC---33P.1.10.000953
ORF835D35DgaCgaT33P.1.150.000697
ORF835D35DgaCgaT220.111111
ORF835D35DgaCgaT22AE.30.064516
ORF835D35FGACTTT12All0
ORF835D35FGAcTTc12All0
ORF835D35delGAC---22AY.1000.000092
ORF835D35HGacCac22AY.1030.000012
ORF835D35GgAcgGc22AY.1030.000012
ORF835D35YGacTac22AY.1060.00067
ORF835D35DgaCgaT22AY.1160.000574
ORF835D35YGacTac22AY.1160.000574
ORF835D35delGAC---22AY.1180.000125
ORF835D35HGacCac22AY.23.10.000835
ORF835D35DgaCgaT22AY.240.000862
ORF835D35delGAC---22AY.260.000057
ORF835D35YGacTac22AY.270.000129
ORF835D35GgAcgGc22AY.30.00002
ORF835D35del1gAcg-c22AY.40.000003
ORF835D35NGacAac22AY.4.20.000043
ORF835D35DgaCgaT22AY.420.00008
ORF835D35NGacAac22AY.420.00008
ORF835D35GgAcgGc22AY.440.000012
ORF835D35YGacTac22AY.450.000243
ORF835D35DgaCgaT22AY.46.40.000329
ORF835D35delGAC---22AY.480.00093
ORF835D35HGacCac22AY.5.30.000675
ORF835D35YGacTac22AY.540.000191
ORF835D35YGacTac22AY.550.001835
ORF835D35DgaCgaT22AY.60.000082
ORF835D35DgaCgaT22AY.610.00021
ORF835D35YGacTac22AY.740.000231
ORF835D35delGAC---22AY.840.000875
ORF835D35DgaCgaT22AY.860.00166
ORF835D35DgaCgaT22AY.9.10.000167
ORF835D35DgaCgaT22AY.920.000575
ORF835D35DgaCgaT22AY.980.000158
ORF835D35YGacTac22AZ.30.00304
ORF835D35GgAcgGc22B.10.000018
ORF835D35YGacTac22B.1.1.1350.00939
ORF835D35DgaCgaT22B.1.1.2140.000111
ORF835D35YGacTac22B.1.1.2140.000111
ORF835D35GgAcgGc22B.1.1.280.000622
ORF835D35DgaCgaT22B.1.1.3720.001377
ORF835D35DgaCgaT22B.1.1.390.001019
ORF835D35DgaCgaT22B.1.1.4160.00181
ORF835D35AgAcgCc22B.1.1.70.000002
ORF835D35FGACTTT12B.1.1.70.000001
ORF835D35FGAcTTc12B.1.1.70.000001
ORF835D35delGAC---22B.1.1260.002551
ORF835D35DgaCgaT22B.1.177.100.001756
ORF835D35YGacTac22B.1.177.600.000437
ORF835D35YGacTac22B.1.177.70.00033
ORF835D35HGacCac22B.1.177.810.000379
ORF835D35GgAcgGc22B.1.177.820.000955
ORF835D35YGacTac22B.1.177.870.001456
ORF835D35EgaCgaA22B.1.2100.004264
ORF835D35NGacAac22B.1.2340.000264
ORF835D35YGacTac22B.1.2390.002442
ORF835D35GgAcgGc22B.1.258.140.001961
ORF835D35DgaCgaT22B.1.258.170.000208
ORF835D35delGAC---22B.1.258.170.000208
ORF835D35DgaCgaT22B.1.2980.004228
ORF835D35delGAC---22B.1.3510.000059
ORF835D35delGAC---22B.1.360.000292
ORF835D35DgaCgaT22B.1.36.80.002
ORF835D35YGacTac22B.1.3990.003868
ORF835D35DgaCgaT22B.1.4040.002604
ORF835D35DgaCgaT22B.1.4080.00738
ORF835D35DgaCgaT22B.1.4200.020833
ORF835D35delGAC---22B.1.4270.000101
ORF835D35NGacAac22B.1.4290.000047
ORF835D35HGacCac22B.1.4290.000047
ORF835D35YGacTac22B.1.4660.046512
ORF835D35DgaCgaT22B.1.466.20.000782
ORF835D35DgaCgaT22B.1.4800.004975
ORF835D35YGacTac22B.1.5250.000226
ORF835D35YGacTac22B.1.5750.000607
ORF835D35YGacTac22B.1.5760.001813
ORF835D35DgaCgaT22B.1.5760.001813
ORF835D35YGacTac22B.1.5960.000174
ORF835D35YGacTac22B.1.621.10.001012
ORF835D35delGAC---22B.1.6280.000705
ORF835D35DgaCgaT22B.1.6370.000146
ORF835D35EgaCgaA22B.400.000729
ORF835D35delGAC---22B.400.000729
ORF835D35GgAcgGc22P.10.000032
ORF835D35delGAC---22P.1.150.000465
ORF835D35delGAC---22P.1.170.000324
ORF835D35YGacTac22P.20.000373
ORF835D35HGacCac22Q.30.00029
ORF835D35EgaCgaA110.055556
ORF835D35YGacTac110.055556
ORF835D35YGacTac11A.20.000662
ORF835D35DgaCgaT11A.20.000662
ORF835D35EgaCgaA11A.2.40.003367
ORF835D35DgaCgaT11A.2.50.000499
ORF835D35delGAC---11AE.40.043478
ORF835D35RGACCGG11All0
ORF835D35MGACATG11All0
ORF835D35delGAC---11AU.30.00211
ORF835D35DgaCgaT11AY.1010.00049
ORF835D35delGAC---11AY.1020.000027
ORF835D35EgaCgaA11AY.1030.000006
ORF835D35DgaCgaT11AY.1050.000643
ORF835D35GgAcgGc11AY.1050.000643
ORF835D35delGAC---11AY.1080.001103
ORF835D35del1gaCga-11AY.1080.001103
ORF835D35DgaCgaT11AY.110.001339
ORF835D35NGacAac11AY.1160.000287
ORF835D35YGacTac11AY.116.10.000311
ORF835D35GgAcgGc11AY.1170.000085
ORF835D35EgaCgaA11AY.1170.000085
ORF835D35HGacCac11AY.1170.000085
ORF835D35NGacAac11AY.1190.000035
ORF835D35EgaCgaA11AY.120.000316
ORF835D35GgAcgGc11AY.1200.000037
ORF835D35DgaCgaT11AY.1200.000037
ORF835D35YGacTac11AY.120.10.000321
ORF835D35NGacAac11AY.120.10.000321
ORF835D35YGacTac11AY.1210.000135
ORF835D35NGacAac11AY.1210.000135
ORF835D35EgaCgaA11AY.130.000161
ORF835D35DgaCgaT11AY.160.00038
ORF835D35YGacTac11AY.210.001898
ORF835D35NGacAac11AY.230.00007
ORF835D35YGacTac11AY.23.10.000417
ORF835D35DgaCgaT11AY.290.000016
ORF835D35NGacAac11AY.290.000016
ORF835D35GgAcgGc11AY.290.000016
ORF835D35VgAcgTc11AY.30.00001
ORF835D35NGacAac11AY.3.10.000085
ORF835D35GgAcgGc11AY.3.10.000085
ORF835D35HGacCac11AY.320.000532
ORF835D35DgaCgaT11AY.320.000532
ORF835D35DgaCgaT11AY.340.000097
ORF835D35YGacTac11AY.34.10.00051
ORF835D35DgaCgaT11AY.34.10.00051
ORF835D35HGacCac11AY.350.000233
ORF835D35HGacCac11AY.360.000148
ORF835D35del1Gac-ac11AY.390.000025
ORF835D35GgAcgGc11AY.390.000025
ORF835D35VgAcgTc11AY.390.000025
ORF835D35EgaCgaA11AY.40.000002
ORF835D35HGacCac11AY.40.000002
ORF835D35AgAcgCc11AY.40.000002
ORF835D35DgaCgaT11AY.4.2.10.000149
ORF835D35delGAC---11AY.4.40.000409
ORF835D35YGacTac11AY.4.40.000409
ORF835D35YGacTac11AY.420.00004
ORF835D35HGacCac11AY.430.000004
ORF835D35NGacAac11AY.430.000004
ORF835D35HGacCac11AY.440.000006
ORF835D35NGacAac11AY.440.000006
ORF835D35AgAcgCc11AY.460.000104
ORF835D35YGacTac11AY.460.000104
ORF835D35DgaCgaT11AY.46.60.000072
ORF835D35DgaCgaT11AY.470.000031
ORF835D35YGacTac11AY.480.000465
ORF835D35DgaCgaT11AY.5.10.003759
ORF835D35DgaCgaT11AY.5.40.000277
ORF835D35HGacCac11AY.580.000907
ORF835D35EgaCgaA11AY.610.000105
ORF835D35YGacTac11AY.610.000105
ORF835D35DgaCgaT11AY.620.000436
ORF835D35YGacTac11AY.620.000436
ORF835D35del2GAC--Y11AY.670.000464
ORF835D35YGacTac11AY.680.000274
ORF835D35GgAcgGc11AY.690.000187
ORF835D35DgaCgaT11AY.70.000196
ORF835D35DgaCgaT11AY.7.10.000113
ORF835D35EgaCgaA11AY.7.10.000113
ORF835D35DgaCgaT11AY.700.000209
ORF835D35YGacTac11AY.720.001361
ORF835D35YGacTac11AY.730.000665
ORF835D35EgaCgaA11AY.740.000116
ORF835D35YGacTac11AY.75.10.00018
ORF835D35DgaCgaT11AY.790.001211
ORF835D35DgaCgaT11AY.840.000437
ORF835D35YGacTac11AY.840.000437
ORF835D35YGacTac11AY.850.000427
ORF835D35YGacTac11AY.880.000884
ORF835D35delGAC---11AY.90.000068
ORF835D35EgaCgaA11AY.90.000068
ORF835D35YGacTac11AY.9.10.000084
ORF835D35GgAcgGc11AY.9.20.000037
ORF835D35DgaCgaT11AY.9.20.000037
ORF835D35DgaCgaT11AY.900.000684
ORF835D35YGacTac11AY.930.000273
ORF835D35HGacCac11AY.990.001049
ORF835D35DgaCgaT11AY.99.20.000092
ORF835D35YGacTac11AZ.20.000821
ORF835D35DgaCgaT11AZ.20.000821
ORF835D35DgaCgaT11AZ.30.00152
ORF835D35YGacTac11AZ.50.003509
ORF835D35HGacCac11B0.000128
ORF835D35YGacTac11B0.000128
ORF835D35HGacCac11B.10.000009
ORF835D35RGACCGG11B.10.000009
ORF835D35NGacAac11B.10.000009
ORF835D35HGacCac11B.1.10.000018
ORF835D35MGACATG11B.1.10.000018
ORF835D35NGacAac11B.1.1.10.000327
ORF835D35VgAcgTc11B.1.1.1350.004695
ORF835D35DgaCgaT11B.1.1.1590.004673
ORF835D35delGAC---11B.1.1.1740.003378
ORF835D35YGacTac11B.1.1.1760.000439
ORF835D35delGAC---11B.1.1.2160.00089
ORF835D35DgaCgaT11B.1.1.2200.001859
ORF835D35NGacAac11B.1.1.2220.000204
ORF835D35YGacTac11B.1.1.2220.000204
ORF835D35GgAcgGc11B.1.1.2220.000204
ORF835D35VgAcgTc11B.1.1.250.000569
ORF835D35delGAC---11B.1.1.250.000569
ORF835D35DgaCgaT11B.1.1.2540.011236
ORF835D35DgaCgaT11B.1.1.2630.001558
ORF835D35YGacTac11B.1.1.2690.001353
ORF835D35YGacTac11B.1.1.270.00565
ORF835D35NGacAac11B.1.1.2700.010309
ORF835D35YGacTac11B.1.1.2770.000759
ORF835D35YGacTac11B.1.1.2820.011628
ORF835D35YGacTac11B.1.1.2840.000107
ORF835D35YGacTac11B.1.1.2890.002083
ORF835D35YGacTac11B.1.1.3170.000412
ORF835D35NGacAac11B.1.1.3170.000412
ORF835D35DgaCgaT11B.1.1.3290.003846
ORF835D35EgaCgaA11B.1.1.330.000421
ORF835D35YGacTac11B.1.1.3480.000796
ORF835D35DgaCgaT11B.1.1.3510.002793
ORF835D35delGAC---11B.1.1.3540.004386
ORF835D35GgAcgGc11B.1.1.3620.005618
ORF835D35DgaCgaT11B.1.1.3750.011905
ORF835D35DgaCgaT11B.1.1.3760.005952
ORF835D35NGacAac11B.1.1.3810.04
ORF835D35GgAcgGc11B.1.1.4020.011111
ORF835D35DgaCgaT11B.1.1.4090.002833
ORF835D35DgaCgaT11B.1.1.4110.014706
ORF835D35YGacTac11B.1.1.4160.000905
ORF835D35NGacAac11B.1.1.4200.001006
ORF835D35YGacTac11B.1.1.4860.001577
ORF835D35YGacTac11B.1.1.500.000679
ORF835D35YGacTac11B.1.1.5170.006803
ORF835D35YGacTac11B.1.1.5250.005464
ORF835D35YGacTac11B.1.1.540.003021
ORF835D35delGAC---11B.1.1.630.000386
ORF835D35del1GAC-NN11B.1.1.70.000001
ORF835D35YGacTac11B.1.1.700.000341
ORF835D35DgaCgaT11B.1.1040.00369
ORF835D35YGacTac11B.1.1040.00369
ORF835D35YGacTac11B.1.110.30.000718
ORF835D35YGacTac11B.1.1110.001175
ORF835D35NGacAac11B.1.1600.000031
ORF835D35YGacTac11B.1.160.160.000929
ORF835D35DgaCgaT11B.1.177.200.001517
ORF835D35YGacTac11B.1.177.210.000076
ORF835D35DgaCgaT11B.1.177.210.000076
ORF835D35DgaCgaT11B.1.177.40.000211
ORF835D35DgaCgaT11B.1.177.420.000894
ORF835D35DgaCgaT11B.1.177.440.000519
ORF835D35DgaCgaT11B.1.177.480.003125
ORF835D35DgaCgaT11B.1.177.530.002392
ORF835D35DgaCgaT11B.1.177.540.000606
ORF835D35YGacTac11B.1.177.540.000606
ORF835D35EgaCgaA11B.1.177.540.000606
ORF835D35DgaCgaT11B.1.177.570.000281
ORF835D35YGacTac11B.1.177.60.000977
ORF835D35DgaCgaT11B.1.177.600.000218
ORF835D35YGacTac11B.1.177.610.043478
ORF835D35delGAC---11B.1.177.630.002703
ORF835D35delGAC---11B.1.177.70.000165
ORF835D35delGAC---11B.1.177.830.001481
ORF835D35YGaCTaT11B.1.177.850.005435
ORF835D35DgaCgaT11B.1.177.860.000183
ORF835D35DgaCgaT11B.1.1820.007246
ORF835D35delGAC---11B.1.1950.005025
ORF835D35del1gaCga-11B.1.20.000009
ORF835D35EgaCgaA11B.1.20.000009
ORF835D35YGacTac11B.1.2060.000816
ORF835D35delGAC---11B.1.2100.002132
ORF835D35YGacTac11B.1.220.001318
ORF835D35NGacAac11B.1.2210.000071
ORF835D35del1Gac-ac11B.1.2430.00007
ORF835D35DgaCgaT11B.1.2470.014925
ORF835D35GgAcgGc11B.1.2580.000067
ORF835D35delGAC---11B.1.2580.000067
ORF835D35delGAC---11B.1.258.120.007874
ORF835D35YGacTac11B.1.258.170.000104
ORF835D35YGacTac11B.1.2600.003344
ORF835D35DgaCgaT11B.1.264.10.047619
ORF835D35GgAcgGc11B.1.2910.019231
ORF835D35DgaCgaT11B.1.3240.001605
ORF835D35DgaCgaT11B.1.3290.000608
ORF835D35YGacTac11B.1.3490.000715
ORF835D35DgaCgaT11B.1.351.10.038462
ORF835D35delGAC---11B.1.351.20.000303
ORF835D35VgAcgTc11B.1.351.30.000876
ORF835D35YGacTac11B.1.360.000146
ORF835D35DgaCgaT11B.1.360.000146
ORF835D35DgaCgaT11B.1.36.160.001425
ORF835D35YGacTac11B.1.36.190.009259
ORF835D35YGacTac11B.1.36.220.001208
ORF835D35YGacTac11B.1.36.290.000517
ORF835D35delGAC---11B.1.36.290.000517
ORF835D35DgaCgaT11B.1.36.360.000602
ORF835D35YGacTac11B.1.36.370.002778
ORF835D35YGacTac11B.1.36.80.001
ORF835D35DgaCgaT11B.1.3620.001541
ORF835D35DgaCgaT11B.1.3660.004878
ORF835D35DgaCgaT11B.1.3690.000285
ORF835D35YGacTac11B.1.3750.00082
ORF835D35DgaCgaT11B.1.3770.004566
ORF835D35DgaCgaT11B.1.3850.010638
ORF835D35DgaCgaT11B.1.3990.001934
ORF835D35DgaCgaT11B.1.4030.003268
ORF835D35YGacTac11B.1.4160.001269
ORF835D35DgaCgaT11B.1.4380.006536
ORF835D35DgaCgaT11B.1.4590.004082
ORF835D35YGacTac11B.1.4620.007246
ORF835D35delGAC---11B.1.4680.005714
ORF835D35DgaCgaT11B.1.4700.001404
ORF835D35YGacTac11B.1.4910.052632
ORF835D35YGacTac11B.1.4920.007042
ORF835D35YGacTac11B.1.4970.000315
ORF835D35YGacTac11B.1.4990.00105
ORF835D35YGacTac11B.1.5170.000427
ORF835D35HGacCac11B.1.5250.000113
ORF835D35NGacAac11B.1.5260.000024
ORF835D35delGAC---11B.1.5260.000024
ORF835D35DgaCgaT11B.1.5320.006211
ORF835D35delGAC---11B.1.5640.000426
ORF835D35DgaCgaT11B.1.575.10.002439
ORF835D35DgaCgaT11B.1.5800.004065
ORF835D35del1gaCga-11B.1.5800.004065
ORF835D35DgaCgaT11B.1.5810.009434
ORF835D35DgaCgaT11B.1.5960.000087
ORF835D35VgAcgTc11B.1.5960.000087
ORF835D35NGacAac11B.1.5960.000087
ORF835D35HGacCac11B.1.5960.000087
ORF835D35DgaCgaT11B.1.6000.005848
ORF835D35EgaCgaA11B.1.6000.005848
ORF835D35DgaCgaT11B.1.6090.000479
ORF835D35NGacAac11B.1.617.10.000129
ORF835D35YGacTac11B.1.617.10.000129
ORF835D35AgAcgCc11B.1.617.20.000004
ORF835D35EgaCgaA11B.1.617.20.000004
ORF835D35HGacCac11B.1.6200.000946
ORF835D35YGacTac11B.1.6200.000946
ORF835D35NGacAac11B.1.6210.000089
ORF835D35YGacTac11B.1.6370.000073
ORF835D35YGacTac11B.1.6390.021739
ORF835D35YGacTac11B.1.780.008547
ORF835D35DgaCgaT11B.340.013699
ORF835D35DgaCgaT11B.4.50.011905
ORF835D35DgaCgaT11B.550.00295
ORF835D35NGacAac11B.6.60.000889
ORF835D35VgAcgTc11B.6.60.000889
ORF835D35DgaCgaT11C.160.00106
ORF835D35DgaCgaT11C.180.002591
ORF835D35DgaCgaT11C.230.005814
ORF835D35delGAC---11C.260.007353
ORF835D35YGacTac11C.360.000911
ORF835D35GgAcgGc11D.20.000075
ORF835D35YGacTac11D.20.000075
ORF835D35EgaCgaA11D.20.000075
ORF835D35delGAC---11N.30.005814
ORF835D35DgaCgaT11N.60.007092
ORF835D35delGAC---11N.60.007092
ORF835D35delGAC---11P.1.120.000484
ORF835D35NGacAac11P.1.130.000898
ORF835D35del1gaCga-11P.1.140.000048
ORF835D35YGacTac11P.1.140.000048
ORF835D35YGacTac11P.1.150.000232
ORF835D35DgaCgaT11P.1.170.000162
ORF835D35GgAcgGc11P.1.170.000162
ORF835D35YGacTac11P.1.40.000977
ORF835D35delGAC---11P.1.70.000319
ORF835D35NGacAac11P.20.000187
ORF835D35DgaCgaT11P.30.001595
ORF835D35YGacTac11P.60.003145
ORF835D35DgaCgaT11P.70.004367
ORF835D35DgaCgaT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.