CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 34

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF8	34	D34D		syn	gaT	gaC	1279	1279	1	27993-27995
ORF8	34	D34del		del	GAT	---	560	560	1	27993-27995
ORF8	34	D34G		nonsyn	gAt	gGt	538	538	1	27993-27995
ORF8	34	D34Y		nonsyn	Gat	Tat	372	372	1	27993-27995
ORF8	34	D34E		nonsyn	gaT	gaA	245	236	0.963265	27993-27995
ORF8	34	D34E		nonsyn	gaT	gaG	245	9	0.0367347	27993-27995
ORF8	34	D34V		nonsyn	gAt	gTt	135	134	0.992593	27993-27995
ORF8	34	D34V		nonsyn	gAT	gTA	135	1	0.00740741	27993-27995
ORF8	34	D34N		nonsyn	Gat	Aat	121	121	1	27993-27995
ORF8	34	D34del2		del	gAT	g--	35	34	0.971429	27993-27995
ORF8	34	D34del2		del	GAt	--t	35	1	0.0285714	27993-27995
ORF8	34	D34A		nonsyn	gAt	gCt	30	29	0.966667	27993-27995
ORF8	34	D34A		nonsyn	gAT	gCG	30	1	0.0333333	27993-27995
ORF8	34	D34H		nonsyn	Gat	Cat	6	5	0.833333	27993-27995
ORF8	34	D34del1		del	Gat	-at	6	3	0.5	27993-27995
ORF8	34	D34del1		del	gaT	ga-	6	3	0.5	27993-27995
ORF8	34	D34H		nonsyn	GaT	CaC	6	1	0.166667	27993-27995
ORF8	34	D34K		nonsyn	GaT	AaA	2	2	1	27993-27995
ORF8	34	D34X		nonsyn	GaT	TaA	1	1	1	27993-27995
ORF8	34	D34R		nonsyn	GAt	CGt	1	1	1	27993-27995

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF8	34	D34D	gaT	gaC	1279	1279	All	0.000245
ORF8	34	D34del	GAT	---	560	560	All	0.000107
ORF8	34	D34G	gAt	gGt	538	538	All	0.000103
ORF8	34	D34Y	Gat	Tat	372	372	All	0.000071
ORF8	34	D34D	gaT	gaC	335	335	B.1.1.7	0.0003
ORF8	34	D34E	gaT	gaA	236	245	All	0.000045
ORF8	34	D34E	gaT	gaG	9	245	All	0.000002
ORF8	34	D34D	gaT	gaC	183	183	B.1.239	0.223443
ORF8	34	D34D	gaT	gaC	171	171	AY.4	0.000266
ORF8	34	D34G	gAt	gGt	140	140	B.1.1.517	0.952381
ORF8	34	D34V	gAt	gTt	134	135	All	0.000026
ORF8	34	D34V	gAT	gTA	1	135	All	0
ORF8	34	D34N	Gat	Aat	121	121	All	0.000023
ORF8	34	D34D	gaT	gaC	118	118	AY.98.1	0.005715
ORF8	34	D34E	gaT	gaA	116	116	AY.3	0.001154
ORF8	34	D34G	gAt	gGt	109	109	B.1.1.7	0.000098
ORF8	34	D34Y	Gat	Tat	107	107	R.1	0.009631
ORF8	34	D34del	GAT	---	102	102	B.1.1.7	0.000091
ORF8	34	D34del	GAT	---	74	74	AY.4	0.000115
ORF8	34	D34D	gaT	gaC	67	67	B.1.617.2	0.000252
ORF8	34	D34D	gaT	gaC	48	48	AY.25	0.000289
ORF8	34	D34Y	Gat	Tat	48	48	B.1.617.2	0.000181
ORF8	34	D34D	gaT	gaC	42	42	AY.30	0.01662
ORF8	34	D34G	gAt	gGt	39	39	AY.43	0.000173
ORF8	34	D34del	GAT	---	38	38	AY.29	0.000599
ORF8	34	D34D	gaT	gaC	36	36	AY.103	0.000224
ORF8	34	D34del2	gAT	g--	34	35	All	0.000007
ORF8	34	D34del2	GAt	--t	1	35	All	0
ORF8	34	D34del	GAT	---	34	34	B.1.243	0.002366
ORF8	34	D34V	gAt	gTt	33	33	AY.3	0.000328
ORF8	34	D34del	GAT	---	33	33	B.1.1.222	0.006732
ORF8	34	D34G	gAt	gGt	32	32	AY.4	0.00005
ORF8	34	D34del2	gAT	g--	31	31	AY.43	0.000137
ORF8	34	D34A	gAt	gCt	29	30	All	0.000006
ORF8	34	D34A	gAT	gCG	1	30	All	0
ORF8	34	D34Y	Gat	Tat	30	30	B.1.1.7	0.000027
ORF8	34	D34G	gAt	gGt	29	29	B.1.617.2	0.000109
ORF8	34	D34E	gaT	gaA	28	28	B.1.1.222	0.005712
ORF8	34	D34del	GAT	---	24	24	AY.103	0.000149
ORF8	34	D34V	gAt	gTt	23	23	B.1.1.7	0.000021
ORF8	34	D34G	gAt	gGt	23	23	B.1.177.79	0.053864
ORF8	34	D34del	GAT	---	22	22	B.1.1	0.000399
ORF8	34	D34N	Gat	Aat	21	21	B.1.1.77	0.875
ORF8	34	D34D	gaT	gaC	20	20	AY.44	0.000122
ORF8	34	D34D	gaT	gaC	18	18	AY.43	0.00008
ORF8	34	D34del	GAT	---	18	18	B	0.002301
ORF8	34	D34D	gaT	gaC	18	18	B.1	0.000165
ORF8	34	D34D	gaT	gaC	18	18	B.1.258	0.001198
ORF8	34	D34G	gAt	gGt	18	18	B.1.36.8	0.018
ORF8	34	D34Y	Gat	Tat	17	17	AY.23	0.001186
ORF8	34	D34E	gaT	gaA	17	17	B.1.2	0.00015
ORF8	34	D34N	Gat	Aat	17	17	B.28	0.055738
ORF8	34	D34Y	Gat	Tat	16	16	AY.92	0.004596
ORF8	34	D34G	gAt	gGt	16	16	B.1.177.82	0.007637
ORF8	34	D34N	Gat	Aat	14	14	B.1	0.000128
ORF8	34	D34del	GAT	---	14	14	B.1.617.2	0.000053
ORF8	34	D34G	gAt	gGt	12	12	AY.103	0.000075
ORF8	34	D34Y	Gat	Tat	12	12	AY.4	0.000019
ORF8	34	D34N	Gat	Aat	12	12	AY.4	0.000019
ORF8	34	D34G	gAt	gGt	12	12	AY.98.1	0.000581
ORF8	34	D34E	gaT	gaA	10	12	B.1.617.2	0.000038
ORF8	34	D34E	gaT	gaG	2	12	B.1.617.2	0.000008
ORF8	34	D34del	GAT	---	11	11	AY.4.2	0.000239
ORF8	34	D34G	gAt	gGt	10	10	AY.39	0.000247
ORF8	34	D34del	GAT	---	10	10	B.1	0.000092
ORF8	34	D34Y	Gat	Tat	10	10	B.1.1	0.000181
ORF8	34	D34N	Gat	Aat	10	10	B.1.1.7	0.000009
ORF8	34	D34del	GAT	---	10	10	B.1.160	0.000312
ORF8	34	D34V	gAt	gTt	9	9	AY.25	0.000054
ORF8	34	D34V	gAt	gTt	9	9	AY.46	0.000937
ORF8	34	D34Y	Gat	Tat	9	9	B.1.1.176	0.003954
ORF8	34	D34D	gaT	gaC	8	8	AY.39	0.000198
ORF8	34	D34E	gaT	gaA	8	8	AY.69	0.001493
ORF8	34	D34del	GAT	---	8	8	B.1.1.284	0.000859
ORF8	34	D34D	gaT	gaC	8	8	B.1.1.519	0.000318
ORF8	34	D34E	gaT	gaA	8	8	B.1.1.7	0.000007
ORF8	34	D34D	gaT	gaC	8	8	B.1.258.4	0.027586
ORF8	34	D34D	gaT	gaC	8	8	B.1.526	0.000188
ORF8	34	D34D	gaT	gaC	8	8	Q.4	0.003638
ORF8	34	D34Y	Gat	Tat	7	7	AY.102	0.000186
ORF8	34	D34E	gaT	gaG	6	7	AY.117	0.000507
ORF8	34	D34E	gaT	gaA	1	7	AY.117	0.000085
ORF8	34	D34A	gAt	gCt	7	7	AY.39	0.000173
ORF8	34	D34V	gAt	gTt	7	7	AY.79	0.008475
ORF8	34	D34Y	Gat	Tat	7	7	B.1	0.000064
ORF8	34	D34V	gAt	gTt	7	7	B.1.1.25	0.00398
ORF8	34	D34del	GAT	---	7	7	B.1.1.265	0.022082
ORF8	34	D34del	GAT	---	7	7	B.1.36.16	0.009972
ORF8	34	D34Y	Gat	Tat	7	7	B.1.400	0.003003
ORF8	34	D34D	gaT	gaC	7	7	B.1.617.1	0.000903
ORF8	34	D34D	gaT	gaC	7	7	P.1	0.00011
ORF8	34	D34del	GAT	---	7	7	P.1	0.00011
ORF8	34	D34del	GAT	---	7	7	P.1.14	0.000335
ORF8	34	D34del	GAT	---	6	6		0.333333
ORF8	34	D34H	Gat	Cat	5	6	All	0.000001
ORF8	34	D34del1	Gat	-at	3	6	All	0.000001
ORF8	34	D34del1	gaT	ga-	3	6	All	0.000001
ORF8	34	D34H	GaT	CaC	1	6	All	0
ORF8	34	D34D	gaT	gaC	6	6	AY.102	0.000159
ORF8	34	D34N	Gat	Aat	6	6	AY.25	0.000036
ORF8	34	D34del	GAT	---	6	6	AY.29.1	0.001323
ORF8	34	D34del	GAT	---	6	6	AY.3	0.00006
ORF8	34	D34G	gAt	gGt	6	6	B.1	0.000055
ORF8	34	D34G	gAt	gGt	6	6	B.1.1	0.000109
ORF8	34	D34del	GAT	---	6	6	B.1.2	0.000053
ORF8	34	D34del	GAT	---	6	6	B.1.243.2	0.086957
ORF8	34	D34G	gAt	gGt	6	6	B.1.596	0.000523
ORF8	34	D34V	gAt	gTt	6	6	B.1.619.1	0.003849
ORF8	34	D34Y	Gat	Tat	5	5	AY.118	0.000313
ORF8	34	D34Y	Gat	Tat	5	5	AY.25	0.00003
ORF8	34	D34D	gaT	gaC	5	5	AY.3	0.00005
ORF8	34	D34del	GAT	---	5	5	AY.44	0.00003
ORF8	34	D34Y	Gat	Tat	5	5	AY.44	0.00003
ORF8	34	D34G	gAt	gGt	5	5	AY.44	0.00003
ORF8	34	D34Y	Gat	Tat	5	5	AY.98.1	0.000242
ORF8	34	D34V	gAt	gTt	5	5	B.1.1	0.000091
ORF8	34	D34del	GAT	---	5	5	B.1.1.389	0.030303
ORF8	34	D34G	gAt	gGt	5	5	B.1.1.519	0.000199
ORF8	34	D34A	gAt	gCt	5	5	B.1.177.32	0.006748
ORF8	34	D34N	Gat	Aat	5	5	B.1.351	0.000149
ORF8	34	D34D	gaT	gaC	5	5	B.1.36.18	0.002101
ORF8	34	D34Y	Gat	Tat	5	5	B.1.511	0.172414
ORF8	34	D34V	gAt	gTt	5	5	B.1.617.2	0.000019
ORF8	34	D34E	gaT	gaA	5	5	B.4	0.011038
ORF8	34	D34D	gaT	gaC	4	4	AY.118	0.000251
ORF8	34	D34del	GAT	---	4	4	AY.25	0.000024
ORF8	34	D34G	gAt	gGt	4	4	AY.29	0.000063
ORF8	34	D34G	gAt	gGt	4	4	AY.3	0.00004
ORF8	34	D34del	GAT	---	4	4	AY.34	0.000388
ORF8	34	D34del	GAT	---	4	4	AY.43	0.000018
ORF8	34	D34del	GAT	---	4	4	AY.5	0.000083
ORF8	34	D34G	gAt	gGt	4	4	B.1.1.101	0.04
ORF8	34	D34D	gaT	gaC	4	4	B.1.1.63	0.001543
ORF8	34	D34D	gaT	gaC	4	4	B.1.160	0.000125
ORF8	34	D34D	gaT	gaC	4	4	B.1.177	0.000053
ORF8	34	D34del	GAT	---	4	4	B.1.177	0.000053
ORF8	34	D34Y	Gat	Tat	4	4	B.1.177.7	0.000659
ORF8	34	D34D	gaT	gaC	4	4	C.11	0.042553
ORF8	34	D34Y	Gat	Tat	4	4	P.1.14	0.000191
ORF8	34	D34V	gAt	gTt	3	3	AY.103	0.000019
ORF8	34	D34Y	Gat	Tat	3	3	AY.103	0.000019
ORF8	34	D34Y	Gat	Tat	3	3	AY.114	0.000693
ORF8	34	D34G	gAt	gGt	3	3	AY.25	0.000018
ORF8	34	D34D	gaT	gaC	3	3	AY.26	0.000085
ORF8	34	D34V	gAt	gTt	3	3	AY.4	0.000005
ORF8	34	D34D	gaT	gaC	3	3	AY.4.2	0.000065
ORF8	34	D34D	gaT	gaC	3	3	AY.42	0.000121
ORF8	34	D34E	gaT	gaA	3	3	AY.45	0.000365
ORF8	34	D34Y	Gat	Tat	3	3	AY.46.6	0.000217
ORF8	34	D34D	gaT	gaC	3	3	AY.5	0.000062
ORF8	34	D34D	gaT	gaC	3	3	AY.6	0.000123
ORF8	34	D34D	gaT	gaC	3	3	AY.74	0.000347
ORF8	34	D34D	gaT	gaC	3	3	AY.99.2	0.000276
ORF8	34	D34A	gAt	gCt	3	3	B.1	0.000027
ORF8	34	D34D	gaT	gaC	3	3	B.1.1	0.000054
ORF8	34	D34N	Gat	Aat	3	3	B.1.1	0.000054
ORF8	34	D34E	gaT	gaA	3	3	B.1.1	0.000054
ORF8	34	D34G	gAt	gGt	3	3	B.1.1.189	0.004539
ORF8	34	D34del	GAT	---	3	3	B.1.1.214	0.000166
ORF8	34	D34D	gaT	gaC	3	3	B.1.1.393	0.333333
ORF8	34	D34del	GAT	---	3	3	B.1.1.519	0.000119
ORF8	34	D34G	gAt	gGt	3	3	B.1.110.3	0.002155
ORF8	34	D34G	gAt	gGt	3	3	B.1.160	0.000094
ORF8	34	D34D	gaT	gaC	3	3	B.1.2	0.000026
ORF8	34	D34E	gaT	gaA	3	3	B.1.369	0.000856
ORF8	34	D34G	gAt	gGt	3	3	B.1.416	0.003807
ORF8	34	D34G	gAt	gGt	3	3	B.1.427	0.000151
ORF8	34	D34Y	Gat	Tat	3	3	B.1.429	0.000071
ORF8	34	D34G	gAt	gGt	3	3	B.1.429	0.000071
ORF8	34	D34del	GAT	---	3	3	B.1.429	0.000071
ORF8	34	D34del	GAT	---	3	3	B.1.509	0.002597
ORF8	34	D34N	Gat	Aat	3	3	B.1.517	0.001281
ORF8	34	D34G	gAt	gGt	3	3	B.1.561	0.001191
ORF8	34	D34del	GAT	---	3	3	P.1.1	0.000953
ORF8	34	D34K	GaT	AaA	2	2		0.111111
ORF8	34	D34N	Gat	Aat	2	2	A.2.5	0.000998
ORF8	34	D34K	GaT	AaA	2	2	All	0
ORF8	34	D34D	gaT	gaC	2	2	AY.1	0.000791
ORF8	34	D34H	Gat	Cat	2	2	AY.100	0.000092
ORF8	34	D34D	gaT	gaC	2	2	AY.100	0.000092
ORF8	34	D34del	GAT	---	2	2	AY.100	0.000092
ORF8	34	D34V	gAt	gTt	2	2	AY.102	0.000053
ORF8	34	D34E	gaT	gaA	2	2	AY.102	0.000053
ORF8	34	D34N	Gat	Aat	2	2	AY.113	0.000285
ORF8	34	D34del	GAT	---	2	2	AY.114	0.000462
ORF8	34	D34D	gaT	gaC	2	2	AY.117	0.000169
ORF8	34	D34del	GAT	---	2	2	AY.118	0.000125
ORF8	34	D34E	gaT	gaA	2	2	AY.20	0.000078
ORF8	34	D34A	gAt	gCt	2	2	AY.26	0.000057
ORF8	34	D34del	GAT	---	2	2	AY.26	0.000057
ORF8	34	D34D	gaT	gaC	2	2	AY.27	0.000129
ORF8	34	D34D	gaT	gaC	2	2	AY.29	0.000032
ORF8	34	D34V	gAt	gTt	2	2	AY.34	0.000194
ORF8	34	D34G	gAt	gGt	2	2	AY.34	0.000194
ORF8	34	D34V	gAt	gTt	2	2	AY.35	0.000466
ORF8	34	D34D	gaT	gaC	2	2	AY.39.1	0.000079
ORF8	34	D34Y	Gat	Tat	2	2	AY.39.1	0.000079
ORF8	34	D34E	gaT	gaA	2	2	AY.43	0.000009
ORF8	34	D34V	gAt	gTt	2	2	AY.43	0.000009
ORF8	34	D34E	gaT	gaA	2	2	AY.44	0.000012
ORF8	34	D34D	gaT	gaC	2	2	AY.45	0.000243
ORF8	34	D34del	GAT	---	2	2	AY.48	0.00093
ORF8	34	D34Y	Gat	Tat	2	2	AY.5	0.000041
ORF8	34	D34D	gaT	gaC	2	2	AY.61	0.00021
ORF8	34	D34G	gAt	gGt	2	2	AY.75	0.000112
ORF8	34	D34del	GAT	---	2	2	AY.84	0.000875
ORF8	34	D34V	gAt	gTt	2	2	B.1	0.000018
ORF8	34	D34E	gaT	gaG	1	2	B.1	0.000009
ORF8	34	D34E	gaT	gaA	1	2	B.1	0.000009
ORF8	34	D34E	gaT	gaA	2	2	B.1.1.216	0.001781
ORF8	34	D34G	gAt	gGt	2	2	B.1.1.222	0.000408
ORF8	34	D34Y	Gat	Tat	2	2	B.1.1.232	0.00363
ORF8	34	D34Y	Gat	Tat	2	2	B.1.1.33	0.000842
ORF8	34	D34D	gaT	gaC	2	2	B.1.1.416	0.00181
ORF8	34	D34A	gAt	gCt	2	2	B.1.1.7	0.000002
ORF8	34	D34V	gAt	gTt	2	2	B.1.111	0.00235
ORF8	34	D34del	GAT	---	2	2	B.1.126	0.002551
ORF8	34	D34Y	Gat	Tat	2	2	B.1.177	0.000026
ORF8	34	D34Y	Gat	Tat	2	2	B.1.177.52	0.003515
ORF8	34	D34D	gaT	gaC	2	2	B.1.177.81	0.000379
ORF8	34	D34E	gaT	gaA	2	2	B.1.177.87	0.001456
ORF8	34	D34N	Gat	Aat	2	2	B.1.2	0.000018
ORF8	34	D34G	gAt	gGt	2	2	B.1.2	0.000018
ORF8	34	D34Y	Gat	Tat	2	2	B.1.2	0.000018
ORF8	34	D34del1	gaT	ga-	1	2	B.1.2	0.000009
ORF8	34	D34del1	Gat	-at	1	2	B.1.2	0.000009
ORF8	34	D34V	gAt	gTt	2	2	B.1.221	0.000142
ORF8	34	D34Y	Gat	Tat	2	2	B.1.232	0.001075
ORF8	34	D34del	GAT	---	2	2	B.1.258.17	0.000208
ORF8	34	D34G	gAt	gGt	2	2	B.1.258.6	0.039216
ORF8	34	D34del	GAT	---	2	2	B.1.36	0.000292
ORF8	34	D34V	gAt	gTt	2	2	B.1.36	0.000292
ORF8	34	D34D	gaT	gaC	2	2	B.1.36.29	0.001035
ORF8	34	D34D	gaT	gaC	2	2	B.1.361	0.002577
ORF8	34	D34N	Gat	Aat	2	2	B.1.375	0.001639
ORF8	34	D34del	GAT	---	2	2	B.1.427	0.000101
ORF8	34	D34V	gAt	gTt	2	2	B.1.427	0.000101
ORF8	34	D34D	gaT	gaC	2	2	B.1.438.1	0.000215
ORF8	34	D34Y	Gat	Tat	2	2	B.1.499	0.002101
ORF8	34	D34E	gaT	gaA	2	2	B.1.511	0.068966
ORF8	34	D34N	Gat	Aat	2	2	B.1.525	0.000226
ORF8	34	D34A	gAt	gCt	2	2	B.1.526	0.000047
ORF8	34	D34G	gAt	gGt	2	2	B.1.526	0.000047
ORF8	34	D34N	Gat	Aat	2	2	B.1.541	0.00885
ORF8	34	D34Y	Gat	Tat	2	2	B.1.564	0.000852
ORF8	34	D34G	gAt	gGt	2	2	B.1.609	0.000959
ORF8	34	D34D	gaT	gaC	2	2	B.1.610	0.007092
ORF8	34	D34Y	Gat	Tat	2	2	B.1.617.1	0.000258
ORF8	34	D34E	gaT	gaA	2	2	B.1.628	0.000705
ORF8	34	D34del2	gAT	g--	2	2	B.1.628	0.000705
ORF8	34	D34G	gAt	gGt	2	2	B.1.637	0.000146
ORF8	34	D34del	GAT	---	2	2	B.40	0.000729
ORF8	34	D34D	gaT	gaC	2	2	C.3	0.015267
ORF8	34	D34E	gaT	gaA	2	2	C.37	0.000232
ORF8	34	D34E	gaT	gaA	2	2	P.1	0.000032
ORF8	34	D34del	GAT	---	2	2	P.1.15	0.000465
ORF8	34	D34del	GAT	---	2	2	P.1.17	0.000324
ORF8	34	D34D	gaT	gaC	2	2	P.1.2	0.002312
ORF8	34	D34D	gaT	gaC	2	2	R.1	0.00018
ORF8	34	D34E	gaT	gaA	1	1	A	0.000387
ORF8	34	D34del	GAT	---	1	1	A.2.5	0.000499
ORF8	34	D34G	gAt	gGt	1	1	A.23.1	0.000704
ORF8	34	D34del	GAT	---	1	1	AE.4	0.043478
ORF8	34	D34X	GaT	TaA	1	1	All	0
ORF8	34	D34R	GAt	CGt	1	1	All	0
ORF8	34	D34del	GAT	---	1	1	AU.3	0.00211
ORF8	34	D34Y	Gat	Tat	1	1	AY.1	0.000396
ORF8	34	D34G	gAt	gGt	1	1	AY.100	0.000046
ORF8	34	D34N	Gat	Aat	1	1	AY.100	0.000046
ORF8	34	D34D	gaT	gaC	1	1	AY.101	0.00049
ORF8	34	D34del	GAT	---	1	1	AY.102	0.000027
ORF8	34	D34D	gaT	gaC	1	1	AY.106	0.000335
ORF8	34	D34D	gaT	gaC	1	1	AY.108	0.001103
ORF8	34	D34del	GAT	---	1	1	AY.108	0.001103
ORF8	34	D34D	gaT	gaC	1	1	AY.111	0.000183
ORF8	34	D34D	gaT	gaC	1	1	AY.113	0.000142
ORF8	34	D34Y	Gat	Tat	1	1	AY.116	0.000287
ORF8	34	D34N	Gat	Aat	1	1	AY.117	0.000085
ORF8	34	D34E	gaT	gaA	1	1	AY.118	0.000063
ORF8	34	D34G	gAt	gGt	1	1	AY.121	0.000135
ORF8	34	D34D	gaT	gaC	1	1	AY.14	0.000088
ORF8	34	D34Y	Gat	Tat	1	1	AY.14	0.000088
ORF8	34	D34Y	Gat	Tat	1	1	AY.16.1	0.00047
ORF8	34	D34D	gaT	gaC	1	1	AY.20	0.000039
ORF8	34	D34Y	Gat	Tat	1	1	AY.20	0.000039
ORF8	34	D34G	gAt	gGt	1	1	AY.20	0.000039
ORF8	34	D34V	gAt	gTt	1	1	AY.23	0.00007
ORF8	34	D34G	gAt	gGt	1	1	AY.24	0.000431
ORF8	34	D34del2	GAt	--t	1	1	AY.25	0.000006
ORF8	34	D34E	gaT	gaA	1	1	AY.25	0.000006
ORF8	34	D34G	gAt	gGt	1	1	AY.28	0.00189
ORF8	34	D34Y	Gat	Tat	1	1	AY.3	0.00001
ORF8	34	D34N	Gat	Aat	1	1	AY.3.1	0.000085
ORF8	34	D34D	gaT	gaC	1	1	AY.3.1	0.000085
ORF8	34	D34A	gAt	gCt	1	1	AY.30	0.000396
ORF8	34	D34G	gAt	gGt	1	1	AY.35	0.000233
ORF8	34	D34Y	Gat	Tat	1	1	AY.39	0.000025
ORF8	34	D34V	gAT	gTA	1	1	AY.39	0.000025
ORF8	34	D34del	GAT	---	1	1	AY.39	0.000025
ORF8	34	D34N	Gat	Aat	1	1	AY.39.1	0.00004
ORF8	34	D34X	GaT	TaA	1	1	AY.4	0.000002
ORF8	34	D34A	gAt	gCt	1	1	AY.4	0.000002
ORF8	34	D34del	GAT	---	1	1	AY.4.4	0.000409
ORF8	34	D34Y	Gat	Tat	1	1	AY.42	0.00004
ORF8	34	D34Y	Gat	Tat	1	1	AY.43	0.000004
ORF8	34	D34A	gAt	gCt	1	1	AY.44	0.000006
ORF8	34	D34N	Gat	Aat	1	1	AY.44	0.000006
ORF8	34	D34Y	Gat	Tat	1	1	AY.45	0.000122
ORF8	34	D34G	gAt	gGt	1	1	AY.46	0.000104
ORF8	34	D34Y	Gat	Tat	1	1	AY.47	0.000031
ORF8	34	D34del1	Gat	-at	1	1	AY.47	0.000031
ORF8	34	D34G	gAt	gGt	1	1	AY.5	0.000021
ORF8	34	D34V	gAt	gTt	1	1	AY.5	0.000021
ORF8	34	D34D	gaT	gaC	1	1	AY.51	0.000909
ORF8	34	D34D	gaT	gaC	1	1	AY.54	0.000095
ORF8	34	D34Y	Gat	Tat	1	1	AY.58	0.000907
ORF8	34	D34G	gAt	gGt	1	1	AY.6	0.000041
ORF8	34	D34del	GAT	---	1	1	AY.67	0.000464
ORF8	34	D34D	gaT	gaC	1	1	AY.70	0.000209
ORF8	34	D34D	gaT	gaC	1	1	AY.71	0.000475
ORF8	34	D34E	gaT	gaA	1	1	AY.75	0.000056
ORF8	34	D34Y	Gat	Tat	1	1	AY.75	0.000056
ORF8	34	D34Y	Gat	Tat	1	1	AY.75.1	0.00018
ORF8	34	D34Y	Gat	Tat	1	1	AY.79	0.001211
ORF8	34	D34A	gAt	gCt	1	1	AY.9	0.000068
ORF8	34	D34del	GAT	---	1	1	AY.9	0.000068
ORF8	34	D34D	gaT	gaC	1	1	AY.92	0.000287
ORF8	34	D34D	gaT	gaC	1	1	AY.98	0.000079
ORF8	34	D34V	gAt	gTt	1	1	AY.98.1	0.000048
ORF8	34	D34D	gaT	gaC	1	1	AY.99	0.001049
ORF8	34	D34del	GAT	---	1	1	AY.99.1	0.001553
ORF8	34	D34D	gaT	gaC	1	1	AY.99.1	0.001553
ORF8	34	D34G	gAt	gGt	1	1	AY.99.2	0.000092
ORF8	34	D34D	gaT	gaC	1	1	B	0.000128
ORF8	34	D34R	GAt	CGt	1	1	B.1	0.000009
ORF8	34	D34D	gaT	gaC	1	1	B.1.1.141	0.002012
ORF8	34	D34del	GAT	---	1	1	B.1.1.174	0.003378
ORF8	34	D34Y	Gat	Tat	1	1	B.1.1.186	0.003436
ORF8	34	D34D	gaT	gaC	1	1	B.1.1.214	0.000055
ORF8	34	D34del	GAT	---	1	1	B.1.1.216	0.00089
ORF8	34	D34D	gaT	gaC	1	1	B.1.1.216	0.00089
ORF8	34	D34del	GAT	---	1	1	B.1.1.25	0.000569
ORF8	34	D34Y	Gat	Tat	1	1	B.1.1.277	0.000759
ORF8	34	D34E	gaT	gaA	1	1	B.1.1.277	0.000759
ORF8	34	D34V	gAt	gTt	1	1	B.1.1.28	0.000311
ORF8	34	D34D	gaT	gaC	1	1	B.1.1.28	0.000311
ORF8	34	D34Y	Gat	Tat	1	1	B.1.1.284	0.000107
ORF8	34	D34D	gaT	gaC	1	1	B.1.1.285	0.006536
ORF8	34	D34Y	Gat	Tat	1	1	B.1.1.318	0.000302
ORF8	34	D34D	gaT	gaC	1	1	B.1.1.348	0.000796
ORF8	34	D34Y	Gat	Tat	1	1	B.1.1.348	0.000796
ORF8	34	D34del	GAT	---	1	1	B.1.1.354	0.004386
ORF8	34	D34V	gAt	gTt	1	1	B.1.1.37	0.000193
ORF8	34	D34A	gAt	gCt	1	1	B.1.1.404	0.015873
ORF8	34	D34D	gaT	gaC	1	1	B.1.1.409	0.002833
ORF8	34	D34Y	Gat	Tat	1	1	B.1.1.416	0.000905
ORF8	34	D34D	gaT	gaC	1	1	B.1.1.420	0.001006
ORF8	34	D34D	gaT	gaC	1	1	B.1.1.50	0.000679
ORF8	34	D34D	gaT	gaC	1	1	B.1.1.518	0.006329
ORF8	34	D34N	Gat	Aat	1	1	B.1.1.519	0.00004
ORF8	34	D34E	gaT	gaA	1	1	B.1.1.521	0.005348
ORF8	34	D34del	GAT	---	1	1	B.1.1.63	0.000386
ORF8	34	D34H	GaT	CaC	1	1	B.1.1.7	0.000001
ORF8	34	D34del2	gAT	g--	1	1	B.1.1.7	0.000001
ORF8	34	D34Y	Gat	Tat	1	1	B.1.1.70	0.000341
ORF8	34	D34Y	Gat	Tat	1	1	B.1.110.3	0.000718
ORF8	34	D34H	Gat	Cat	1	1	B.1.128	0.000635
ORF8	34	D34D	gaT	gaC	1	1	B.1.157	0.002985
ORF8	34	D34E	gaT	gaA	1	1	B.1.160	0.000031
ORF8	34	D34del1	gaT	ga-	1	1	B.1.160	0.000031
ORF8	34	D34N	Gat	Aat	1	1	B.1.177	0.000013
ORF8	34	D34A	gAt	gCt	1	1	B.1.177	0.000013
ORF8	34	D34E	gaT	gaA	1	1	B.1.177	0.000013
ORF8	34	D34D	gaT	gaC	1	1	B.1.177.10	0.000878
ORF8	34	D34N	Gat	Aat	1	1	B.1.177.45	0.000381
ORF8	34	D34del1	Gat	-at	1	1	B.1.177.52	0.001757
ORF8	34	D34G	gAt	gGt	1	1	B.1.177.62	0.001192
ORF8	34	D34del	GAT	---	1	1	B.1.177.63	0.002703
ORF8	34	D34del	GAT	---	1	1	B.1.177.7	0.000165
ORF8	34	D34V	gAt	gTt	1	1	B.1.177.73	0.000566
ORF8	34	D34E	gaT	gaA	1	1	B.1.177.81	0.000189
ORF8	34	D34del	GAT	---	1	1	B.1.177.83	0.001481
ORF8	34	D34del	GAT	---	1	1	B.1.195	0.005025
ORF8	34	D34D	gaT	gaC	1	1	B.1.206	0.000816
ORF8	34	D34del	GAT	---	1	1	B.1.210	0.002132
ORF8	34	D34A	gAT	gCG	1	1	B.1.221	0.000071
ORF8	34	D34D	gaT	gaC	1	1	B.1.234	0.000132
ORF8	34	D34G	gAt	gGt	1	1	B.1.240	0.000216
ORF8	34	D34D	gaT	gaC	1	1	B.1.241	0.000812
ORF8	34	D34G	gAt	gGt	1	1	B.1.243	0.00007
ORF8	34	D34del	GAT	---	1	1	B.1.258	0.000067
ORF8	34	D34Y	Gat	Tat	1	1	B.1.258.11	0.000396
ORF8	34	D34del	GAT	---	1	1	B.1.258.12	0.007874
ORF8	34	D34N	Gat	Aat	1	1	B.1.311	0.000275
ORF8	34	D34D	gaT	gaC	1	1	B.1.320	0.001245
ORF8	34	D34E	gaT	gaA	1	1	B.1.346	0.001311
ORF8	34	D34D	gaT	gaC	1	1	B.1.350	0.002933
ORF8	34	D34G	gAt	gGt	1	1	B.1.351	0.00003
ORF8	34	D34del1	gaT	ga-	1	1	B.1.351	0.00003
ORF8	34	D34D	gaT	gaC	1	1	B.1.351	0.00003
ORF8	34	D34del	GAT	---	1	1	B.1.351	0.00003
ORF8	34	D34del	GAT	---	1	1	B.1.351.2	0.000303
ORF8	34	D34N	Gat	Aat	1	1	B.1.351.3	0.000876
ORF8	34	D34Y	Gat	Tat	1	1	B.1.36	0.000146
ORF8	34	D34D	gaT	gaC	1	1	B.1.36	0.000146
ORF8	34	D34Y	Gat	Tat	1	1	B.1.36.17	0.000494
ORF8	34	D34del	GAT	---	1	1	B.1.36.29	0.000517
ORF8	34	D34Y	Gat	Tat	1	1	B.1.36.29	0.000517
ORF8	34	D34D	gaT	gaC	1	1	B.1.36.31	0.001751
ORF8	34	D34Y	Gat	Tat	1	1	B.1.36.31	0.001751
ORF8	34	D34D	gaT	gaC	1	1	B.1.405	0.012346
ORF8	34	D34N	Gat	Aat	1	1	B.1.427	0.00005
ORF8	34	D34D	gaT	gaC	1	1	B.1.429	0.000024
ORF8	34	D34Y	Gat	Tat	1	1	B.1.466	0.023256
ORF8	34	D34Y	Gat	Tat	1	1	B.1.466.2	0.000391
ORF8	34	D34del	GAT	---	1	1	B.1.468	0.005714
ORF8	34	D34N	Gat	Aat	1	1	B.1.473	0.019231
ORF8	34	D34A	gAt	gCt	1	1	B.1.492	0.007042
ORF8	34	D34D	gaT	gaC	1	1	B.1.497	0.000315
ORF8	34	D34del	GAT	---	1	1	B.1.526	0.000024
ORF8	34	D34E	gaT	gaA	1	1	B.1.526	0.000024
ORF8	34	D34Y	Gat	Tat	1	1	B.1.548	0.035714
ORF8	34	D34N	Gat	Aat	1	1	B.1.558	0.004566
ORF8	34	D34E	gaT	gaA	1	1	B.1.564	0.000426
ORF8	34	D34del	GAT	---	1	1	B.1.564	0.000426
ORF8	34	D34G	gAt	gGt	1	1	B.1.587	0.001898
ORF8	34	D34N	Gat	Aat	1	1	B.1.596	0.000087
ORF8	34	D34D	gaT	gaC	1	1	B.1.596	0.000087
ORF8	34	D34H	Gat	Cat	1	1	B.1.617.1	0.000129
ORF8	34	D34H	Gat	Cat	1	1	B.1.617.2	0.000004
ORF8	34	D34A	gAt	gCt	1	1	B.1.617.2	0.000004
ORF8	34	D34N	Gat	Aat	1	1	B.1.617.2	0.000004
ORF8	34	D34D	gaT	gaC	1	1	B.1.620	0.000946
ORF8	34	D34Y	Gat	Tat	1	1	B.1.621	0.000089
ORF8	34	D34Y	Gat	Tat	1	1	B.1.627	0.00202
ORF8	34	D34Y	Gat	Tat	1	1	B.6	0.00091
ORF8	34	D34D	gaT	gaC	1	1	B.6.6	0.000889
ORF8	34	D34D	gaT	gaC	1	1	C.1	0.002392
ORF8	34	D34D	gaT	gaC	1	1	C.16	0.00106
ORF8	34	D34del	GAT	---	1	1	C.26	0.007353
ORF8	34	D34N	Gat	Aat	1	1	C.37	0.000116
ORF8	34	D34D	gaT	gaC	1	1	D.2	0.000075
ORF8	34	D34G	gAt	gGt	1	1	D.2	0.000075
ORF8	34	D34E	gaT	gaA	1	1	N.3	0.005814
ORF8	34	D34del	GAT	---	1	1	N.3	0.005814
ORF8	34	D34del	GAT	---	1	1	N.6	0.007092
ORF8	34	D34N	Gat	Aat	1	1	P.1	0.000016
ORF8	34	D34D	gaT	gaC	1	1	P.1.1	0.000318
ORF8	34	D34del	GAT	---	1	1	P.1.12	0.000484
ORF8	34	D34D	gaT	gaC	1	1	P.1.15	0.000232
ORF8	34	D34D	gaT	gaC	1	1	P.1.16	0.000374
ORF8	34	D34Y	Gat	Tat	1	1	P.1.17	0.000162
ORF8	34	D34D	gaT	gaC	1	1	P.1.17	0.000162
ORF8	34	D34del	GAT	---	1	1	P.1.7	0.000319
ORF8	34	D34N	Gat	Aat	1	1	P.2	0.000187
ORF8	34	D34G	gAt	gGt	1	1	R.1	0.00009
ORF8	34	D34D	gaT	gaC	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.