CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 3

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF83F3deldelTTT---72487248127900-27902
ORF83F3LnonsynTttCtt313230890.98627127900-27902
ORF83F3LnonsynttTttG3132240.0076628427900-27902
ORF83F3LnonsynttTttA3132120.0038314227900-27902
ORF83F3LnonsynTtTCtA313230.00095785427900-27902
ORF83F3LnonsynTtTCtC313220.0006385727900-27902
ORF83F3LnonsynTtTCtG313220.0006385727900-27902
ORF83F3SnonsyntTttCt518518127900-27902
ORF83F3del2delTTt--t5165140.99612427900-27902
ORF83F3del2deltTTt--51620.0038759727900-27902
ORF83F3CnonsyntTttGt183183127900-27902
ORF83F3FsynttTttC129129127900-27902
ORF83F3YnonsyntTttAt103980.95145627900-27902
ORF83F3YnonsyntTTtAC10350.048543727900-27902
ORF83F3del1delTtt-tt81720.88888927900-27902
ORF83F3del1delttTtt-8160.074074127900-27902
ORF83F3del1delTTt-Nt8110.012345727900-27902
ORF83F3del1delTTt-Ct8110.012345727900-27902
ORF83F3del1delTTt-At8110.012345727900-27902
ORF83F3InonsynTttAtt45400.88888927900-27902
ORF83F3InonsynTtTAtC4550.11111127900-27902
ORF83F3VnonsynTttGtt870.87527900-27902
ORF83F3VnonsynTtTGtG810.12527900-27902
ORF83F3HnonsynTTtCAt750.71428627900-27902
ORF83F3NnonsynTTtAAt740.57142927900-27902
ORF83F3NnonsynTTTAAC730.42857127900-27902
ORF83F3HnonsynTTTCAC720.28571427900-27902
ORF83F3PnonsynTTtCCt22127900-27902
ORF83F3MnonsynTtTAtG11127900-27902
ORF83F3TnonsynTTtACt11127900-27902
ORF83F3DnonsynTTtGAt11127900-27902
ORF83F3RnonsynTTtCGt11127900-27902
ORF83F3XnonsyntTTtAA11127900-27902

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF83F3delTTT---72487248All0.001386
ORF83F3LTttCtt30893132All0.000591
ORF83F3LttTttG243132All0.000005
ORF83F3LttTttA123132All0.000002
ORF83F3LTtTCtA33132All0.000001
ORF83F3LTtTCtC23132All0
ORF83F3LTtTCtG23132All0
ORF83F3delTTT---30913091B.1.1.3180.93271
ORF83F3LTttCtt13011319AY.40.002025
ORF83F3LttTttG181319AY.40.000028
ORF83F3delTTT---11551155AZ.20.948276
ORF83F3delTTT---11521152AZ.10.999133
ORF83F3delTTT---614614AZ.30.933131
ORF83F3LTttCtt583583B.1.1.4330.830484
ORF83F3StTttCt518518All0.000099
ORF83F3del2TTt--t514516All0.000098
ORF83F3del2tTTt--2516All0
ORF83F3del2TTt--t378378B.1.6250.889412
ORF83F3delTTT---274274AZ.40.919463
ORF83F3LTttCtt265268B.1.1.70.000237
ORF83F3LttTttA3268B.1.1.70.000003
ORF83F3delTTT---226226AZ.50.792982
ORF83F3CtTttGt183183All0.000035
ORF83F3LTttCtt148149B.1.1600.004616
ORF83F3LttTttA1149B.1.1600.000031
ORF83F3FttTttC129129All0.000025
ORF83F3StTttCt120120B.1.1.70.000107
ORF83F3CtTttGt112112AY.40.000174
ORF83F3delTTT---110110AZ.2.10.894309
ORF83F3YtTttAt98103All0.000019
ORF83F3YtTTtAC5103All0.000001
ORF83F3delTTT---9393AZ.60.781513
ORF83F3del1Ttt-tt7281All0.000014
ORF83F3del1ttTtt-681All0.000001
ORF83F3del1TTt-Ct181All0
ORF83F3del1TTt-Nt181All0
ORF83F3del1TTt-At181All0
ORF83F3delTTT---8181B.1.1.70.000073
ORF83F3delTTT---7979AY.40.000123
ORF83F3LTttCtt7979AY.4.20.001713
ORF83F3LTttCtt7979AY.46.60.005704
ORF83F3StTttCt7575P.20.013998
ORF83F3StTttCt7373B.10.000669
ORF83F3del2TTt--t6161B.1.1.5280.293269
ORF83F3FttTttC5454C.310.964286
ORF83F3LTttCtt5051AY.250.000301
ORF83F3LttTttG151AY.250.000006
ORF83F3LTttCtt5151AY.440.00031
ORF83F3StTttCt4949B.1.20.000431
ORF83F3delTTT---4949B.1.2430.00341
ORF83F3ITttAtt4045All0.000008
ORF83F3ITtTAtC545All0.000001
ORF83F3YtTttAt4242B.1.20.00037
ORF83F3delTTT---3737AY.290.000584
ORF83F3LTttCtt3637B.1.617.20.000136
ORF83F3LTtTCtA137B.1.617.20.000004
ORF83F3LTttCtt3535AY.1030.000217
ORF83F3CtTttGt3434C.160.036055
ORF83F3LTttCtt3333AY.39.10.001307
ORF83F3del2TTt--t3232B.10.000293
ORF83F3LTttCtt2929B.1.1180.194631
ORF83F3delTTT---2929B.1.3990.056093
ORF83F3delTTT---2828P.10.000441
ORF83F3LTttCtt2424AY.1020.000636
ORF83F3LTttCtt2222B.1.6370.001608
ORF83F3LTttCtt2121AY.30.000209
ORF83F3YtTttAt2020B.1.1.3180.006035
ORF83F3LTttCtt1919AY.1200.000706
ORF83F3StTttCt1818AY.30.000179
ORF83F3delTTT---1717B0.002173
ORF83F3LTttCtt1617B.10.000147
ORF83F3LttTttA117B.10.000009
ORF83F3del1Ttt-tt1717B.1.1.70.000015
ORF83F3StTttCt1717B.1.617.20.000064
ORF83F3StTttCt1616AY.40.000025
ORF83F3LTttCtt1616B.1.1.2220.003264
ORF83F3del1Ttt-tt1616B.1.177.350.011057
ORF83F3LTttCtt1616C.291
ORF83F3delTTT---1515B.1.10.000272
ORF83F3LTttCtt1414AY.430.000062
ORF83F3delTTT---1414B.1.1.280.004357
ORF83F3LTttCtt1313AY.1000.000598
ORF83F3FttTttC1313B.1.1.70.000012
ORF83F3LTtTCtA2120.111111
ORF83F3LttTttG2120.111111
ORF83F3LTtTCtG2120.111111
ORF83F3LttTttA2120.111111
ORF83F3LTttCtt2120.111111
ORF83F3LTtTCtC2120.111111
ORF83F3StTttCt1212AY.1030.000075
ORF83F3LTttCtt1212AY.1170.001014
ORF83F3LTttCtt1212B.1.10.000218
ORF83F3LTttCtt1011AY.290.000158
ORF83F3LttTttG111AY.290.000016
ORF83F3delTTT---1111B.10.000101
ORF83F3delTTT---1111B.1.20.000097
ORF83F3StTttCt1010AY.430.000044
ORF83F3StTttCt1010AY.440.000061
ORF83F3YtTttAt1010B.1.4270.000505
ORF83F3FttTttC99AY.40.000014
ORF83F3delTTT---99AY.440.000055
ORF83F3YtTttAt99AZ.20.007389
ORF83F3FttTttC99B.1.10.000163
ORF83F3del2TTt--t99B.1.1.3180.002716
ORF83F3LTttCtt89B.1.20.00007
ORF83F3LttTttA19B.1.20.000009
ORF83F3LTttCtt89P.10.000126
ORF83F3LttTttG19P.10.000016
ORF83F3VTttGtt78All0.000001
ORF83F3VTtTGtG18All0
ORF83F3StTttCt88AY.250.000048
ORF83F3LTttCtt88AY.390.000198
ORF83F3LTttCtt88AY.5.40.002214
ORF83F3delTTT---88B.1.617.20.00003
ORF83F3HTTtCAt57All0.000001
ORF83F3NTTtAAt47All0.000001
ORF83F3NTTTAAC37All0.000001
ORF83F3HTTTCAC27All0
ORF83F3del1Ttt-tt77AY.1030.000043
ORF83F3LTttCtt57AY.260.000142
ORF83F3LttTttA27AY.260.000057
ORF83F3delTTT---77B.1.1.2650.022082
ORF83F3LTttCtt77B.1.177.460.006428
ORF83F3LTttCtt77B.1.3510.000208
ORF83F3StTttCt77B.1.4290.000165
ORF83F3CtTttGt77B.1.617.20.000026
ORF83F3LTttCtt77P.1.140.000335
ORF83F3YtTTtAC460.222222
ORF83F3YtTttAt260.111111
ORF83F3LTttCtt66AY.140.000528
ORF83F3LTttCtt66AY.200.000233
ORF83F3delTTT---66AY.29.10.001323
ORF83F3delTTT---66AY.30.00006
ORF83F3del1Ttt-tt66AY.740.000694
ORF83F3LTttCtt56AY.9.20.000184
ORF83F3LttTttG16AY.9.20.000037
ORF83F3ITttAtt66B.1.1.1280.042553
ORF83F3del2TTt--t66B.1.1.340.078947
ORF83F3StTttCt66B.1.1600.000187
ORF83F3delTTT---66B.1.243.20.086957
ORF83F3delTTT---66B.1.617.10.000774
ORF83F3StTttCt55AY.1000.00023
ORF83F3delTTT---55AY.3.10.000426
ORF83F3StTttCt55AY.330.000334
ORF83F3LTttCtt55B.1.1.1760.002197
ORF83F3LTttCtt55B.1.1.2940.006329
ORF83F3LTttCtt55B.1.1.330.002104
ORF83F3delTTT---55B.1.1.5190.000199
ORF83F3StTttCt55B.1.1390.003666
ORF83F3NTTTAAC240.111111
ORF83F3NTTtAAt240.111111
ORF83F3ITtTAtC240.111111
ORF83F3HTTtCAt240.111111
ORF83F3HTTTCAC240.111111
ORF83F3ITttAtt240.111111
ORF83F3delTTT---44AT.10.020513
ORF83F3StTttCt44AY.1190.000141
ORF83F3LTttCtt44AY.330.000267
ORF83F3FttTttC44AY.430.000018
ORF83F3CtTttGt44AZ.20.003284
ORF83F3del1Ttt-tt44B.1.1.4870.022346
ORF83F3del2TTt--t44B.1.1280.002541
ORF83F3LTttCtt44B.1.1770.000053
ORF83F3del1Ttt-tt44B.1.1770.000053
ORF83F3delTTT---44B.1.5260.000094
ORF83F3LTttCtt44B.1.6120.01061
ORF83F3FttTttC44B.1.617.20.000015
ORF83F3CtTttGt44B.1.6250.009412
ORF83F3FttTttC44B.230.011696
ORF83F3StTttCt44P.10.000063
ORF83F3FttTttC33AY.1030.000019
ORF83F3delTTT---33AY.1030.000019
ORF83F3LTttCtt33AY.1190.000106
ORF83F3LTttCtt33AY.230.000209
ORF83F3delTTT---33AY.250.000018
ORF83F3delTTT---33AY.260.000085
ORF83F3StTttCt33AY.290.000047
ORF83F3LTttCtt33AY.3.10.000256
ORF83F3delTTT---33AY.370.000948
ORF83F3StTttCt33AY.390.000074
ORF83F3CtTttGt33AY.430.000013
ORF83F3LTttCtt33AY.46.40.000494
ORF83F3delTTT---33AY.480.001395
ORF83F3StTttCt33AY.980.000237
ORF83F3ITttAtt33B.10.000027
ORF83F3FttTttC33B.10.000027
ORF83F3del1Ttt-tt23B.10.000018
ORF83F3del1ttTtt-13B.10.000009
ORF83F3CtTttGt33B.1.10.000054
ORF83F3StTttCt33B.1.10.000054
ORF83F3ITttAtt23B.1.10.000036
ORF83F3ITtTAtC13B.1.10.000018
ORF83F3StTttCt33B.1.1.3060.001315
ORF83F3ITttAtt33B.1.1.3170.001235
ORF83F3del2TTt--t33B.1.1.5070.026087
ORF83F3LTttCtt33B.1.1.5190.000119
ORF83F3ITttAtt33B.1.1.70.000003
ORF83F3delTTT---33B.1.1260.003827
ORF83F3LTttCtt33B.1.177.120.000455
ORF83F3LTttCtt33B.1.2360.00616
ORF83F3StTttCt33B.1.258.170.000312
ORF83F3StTttCt33B.1.3110.000824
ORF83F3StTttCt33B.1.360.000438
ORF83F3LTttCtt33B.1.5880.00273
ORF83F3LTttCtt33B.1.5960.000261
ORF83F3YtTttAt33P.10.000047
ORF83F3LTttCtt33Q.20.00184
ORF83F3FttTttC220.111111
ORF83F3delTTT---220.111111
ORF83F3delTTT---22A.2.20.003378
ORF83F3delTTT---22AD.20.000438
ORF83F3PTTtCCt22All0
ORF83F3delTTT---22AY.1180.000125
ORF83F3del1ttTtt-22AY.200.000078
ORF83F3CtTttGt22AY.200.000078
ORF83F3CtTttGt22AY.250.000012
ORF83F3StTttCt22AY.270.000129
ORF83F3YtTTtAC12AY.30.00001
ORF83F3NTTtAAt12AY.30.00001
ORF83F3ITttAtt12AY.30.00001
ORF83F3NTTTAAC12AY.30.00001
ORF83F3ITtTAtC12AY.30.00001
ORF83F3YtTttAt12AY.30.00001
ORF83F3CtTttGt22AY.390.000049
ORF83F3ITttAtt22AY.40.000003
ORF83F3StTttCt22AY.4.20.000043
ORF83F3LTttCtt22AY.4.50.000215
ORF83F3LTttCtt22AY.420.00008
ORF83F3delTTT---22AY.430.000009
ORF83F3del1Ttt-tt22AY.460.000208
ORF83F3StTttCt22AY.46.50.000397
ORF83F3delTTT---22AY.470.000062
ORF83F3FttTttC22AY.50.000041
ORF83F3delTTT---22AY.700.000417
ORF83F3LTttCtt22AY.710.00095
ORF83F3StTttCt22AY.810.003984
ORF83F3LTttCtt22AY.90.000135
ORF83F3FttTttC22AY.90.000135
ORF83F3LTttCtt22AY.920.000575
ORF83F3StTttCt22AY.99.20.000184
ORF83F3LTttCtt22AY.99.20.000184
ORF83F3del2TTt--t22AZ.20.001642
ORF83F3del1TTt-At12AZ.20.000821
ORF83F3del1TTt-Nt12AZ.20.000821
ORF83F3FttTttC22B.1.1.10.000653
ORF83F3delTTT---22B.1.1.2140.000111
ORF83F3delTTT---22B.1.1.3060.000877
ORF83F3StTttCt22B.1.1.5190.000079
ORF83F3CtTttGt22B.1.1.5280.009615
ORF83F3del2TTt--t22B.1.1.70.000002
ORF83F3VTttGtt22B.1.1.70.000002
ORF83F3delTTT---22B.1.110.30.001437
ORF83F3LTttCtt22B.1.177.330.003289
ORF83F3ITttAtt22B.1.20.000018
ORF83F3StTttCt22B.1.2430.000139
ORF83F3YtTttAt22B.1.3510.000059
ORF83F3FttTttC22B.1.4270.000101
ORF83F3delTTT---22B.1.4270.000101
ORF83F3YtTttAt22B.1.4290.000047
ORF83F3ITttAtt22B.1.4290.000047
ORF83F3LTttCtt22B.1.4330.00639
ORF83F3FttTttC22B.1.4920.014085
ORF83F3delTTT---22B.1.5090.001732
ORF83F3StTttCt22B.1.5510.002581
ORF83F3delTTT---22B.1.5680.002222
ORF83F3del1Ttt-tt22B.1.617.20.000008
ORF83F3delTTT---22B.1.6210.000177
ORF83F3LTttCtt22B.1.6210.000177
ORF83F3delTTT---22B.1.6370.000146
ORF83F3LTttCtt22B.120.012821
ORF83F3LTttCtt22C.370.000232
ORF83F3del1ttTtt-12P.10.000016
ORF83F3del1Ttt-tt12P.10.000016
ORF83F3delTTT---22P.1.120.000968
ORF83F3YtTttAt22P.1.130.001797
ORF83F3StTttCt22P.1.140.000096
ORF83F3delTTT---22P.1.150.000465
ORF83F3LTttCtt11A.2.50.000499
ORF83F3delTTT---11A.2.50.000499
ORF83F3del2TTt--t11A.230.010526
ORF83F3delTTT---11A.23.10.000704
ORF83F3StTttCt11A.50.001923
ORF83F3StTttCt11AD.20.000219
ORF83F3DTTtGAt11All0
ORF83F3XtTTtAA11All0
ORF83F3MTtTAtG11All0
ORF83F3TTTtACt11All0
ORF83F3RTTtCGt11All0
ORF83F3LTttCtt11AM.40.003571
ORF83F3delTTT---11AY.1000.000046
ORF83F3StTttCt11AY.1020.000027
ORF83F3VTttGtt11AY.1030.000006
ORF83F3delTTT---11AY.1070.000466
ORF83F3delTTT---11AY.1080.001103
ORF83F3LTttCtt11AY.1100.000113
ORF83F3LTttCtt11AY.1160.000287
ORF83F3FttTttC11AY.1180.000063
ORF83F3LTttCtt11AY.1180.000063
ORF83F3del2TTt--t11AY.1190.000035
ORF83F3LTttCtt11AY.120.000316
ORF83F3del1Ttt-tt11AY.1200.000037
ORF83F3StTttCt11AY.1200.000037
ORF83F3del2TTt--t11AY.130.000161
ORF83F3ITttAtt11AY.130.000161
ORF83F3delTTT---11AY.130.000161
ORF83F3delTTT---11AY.200.000039
ORF83F3FttTttC11AY.200.000039
ORF83F3del2TTt--t11AY.250.000006
ORF83F3StTttCt11AY.260.000028
ORF83F3FttTttC11AY.30.00001
ORF83F3LTttCtt11AY.340.000097
ORF83F3delTTT---11AY.360.000148
ORF83F3FttTttC11AY.380.000499
ORF83F3delTTT---11AY.390.000025
ORF83F3del2TTt--t11AY.390.000025
ORF83F3del1Ttt-tt11AY.40.000002
ORF83F3VTttGtt11AY.40.000002
ORF83F3del2TTt--t11AY.4.20.000022
ORF83F3delTTT---11AY.4.20.000022
ORF83F3CtTttGt11AY.4.20.000022
ORF83F3PTTtCCt11AY.430.000004
ORF83F3HTTtCAt11AY.430.000004
ORF83F3del1Ttt-tt11AY.440.000006
ORF83F3VTttGtt11AY.440.000006
ORF83F3ITttAtt11AY.440.000006
ORF83F3LTttCtt11AY.450.000122
ORF83F3CtTttGt11AY.450.000122
ORF83F3StTttCt11AY.470.000031
ORF83F3LTttCtt11AY.470.000031
ORF83F3StTttCt11AY.50.000021
ORF83F3LTttCtt11AY.50.000021
ORF83F3StTttCt11AY.5.40.000277
ORF83F3StTttCt11AY.550.000917
ORF83F3delTTT---11AY.550.000917
ORF83F3LTttCtt11AY.570.000656
ORF83F3LTttCtt11AY.60.000041
ORF83F3VTttGtt11AY.60.000041
ORF83F3StTttCt11AY.60.000041
ORF83F3LTttCtt11AY.600.000938
ORF83F3CtTttGt11AY.610.000105
ORF83F3LTttCtt11AY.610.000105
ORF83F3ITttAtt11AY.620.000436
ORF83F3StTttCt11AY.640.000595
ORF83F3LTttCtt11AY.640.000595
ORF83F3delTTT---11AY.670.000464
ORF83F3LTttCtt11AY.7.10.000113
ORF83F3delTTT---11AY.740.000116
ORF83F3LTttCtt11AY.740.000116
ORF83F3delTTT---11AY.750.000056
ORF83F3StTttCt11AY.750.000056
ORF83F3ITttAtt11AY.75.10.00018
ORF83F3YtTttAt11AY.840.000437
ORF83F3LTttCtt11AY.870.000833
ORF83F3StTttCt11AY.930.000273
ORF83F3LTttCtt11AY.980.000079
ORF83F3StTttCt11AY.990.001049
ORF83F3delTTT---11AY.99.10.001553
ORF83F3del2TTt--t11AZ.10.000867
ORF83F3YtTttAt11AZ.30.00152
ORF83F3YtTttAt11AZ.50.003509
ORF83F3LttTttA11B0.000128
ORF83F3XtTTtAA11B.10.000009
ORF83F3YtTttAt11B.10.000009
ORF83F3del2TTt--t11B.1.10.000018
ORF83F3MTtTAtG11B.1.10.000018
ORF83F3NTTtAAt11B.1.10.000018
ORF83F3ITttAtt11B.1.1.10.000327
ORF83F3FttTttC11B.1.1.1940.00495
ORF83F3del1ttTtt-11B.1.1.2140.000055
ORF83F3delTTT---11B.1.1.2160.00089
ORF83F3StTttCt11B.1.1.2220.000204
ORF83F3ITttAtt11B.1.1.2220.000204
ORF83F3del2TTt--t11B.1.1.280.000311
ORF83F3delTTT---11B.1.1.2840.000107
ORF83F3LTttCtt11B.1.1.2910.000742
ORF83F3StTttCt11B.1.1.3170.000412
ORF83F3FttTttC11B.1.1.3510.002793
ORF83F3delTTT---11B.1.1.3540.004386
ORF83F3delTTT---11B.1.1.370.000193
ORF83F3del1TTt-Ct11B.1.1.4330.001425
ORF83F3LTttCtt11B.1.1.4340.000349
ORF83F3delTTT---11B.1.1.440.00241
ORF83F3LTttCtt11B.1.1.450.014085
ORF83F3del1Ttt-tt11B.1.1.5190.00004
ORF83F3LTttCtt11B.1.1.670.004566
ORF83F3del1Ttt-tt11B.1.1.700.000341
ORF83F3LTttCtt11B.1.1.890.006061
ORF83F3StTttCt11B.1.1110.001175
ORF83F3del2TTt--t11B.1.1570.002985
ORF83F3delTTT---11B.1.1570.002985
ORF83F3del2TTt--t11B.1.1600.000031
ORF83F3FttTttC11B.1.1600.000031
ORF83F3ITttAtt11B.1.1770.000013
ORF83F3delTTT---11B.1.1770.000013
ORF83F3CtTttGt11B.1.177.210.000076
ORF83F3StTttCt11B.1.177.210.000076
ORF83F3LTttCtt11B.1.177.230.003236
ORF83F3del2TTt--t11B.1.177.500.004695
ORF83F3delTTT---11B.1.177.540.000606
ORF83F3ITtTAtC11B.1.177.630.002703
ORF83F3FttTttC11B.1.177.70.000165
ORF83F3delTTT---11B.1.177.70.000165
ORF83F3StTttCt11B.1.177.730.000566
ORF83F3LTttCtt11B.1.177.730.000566
ORF83F3delTTT---11B.1.177.830.001481
ORF83F3delTTT---11B.1.1950.005025
ORF83F3del1ttTtt-11B.1.20.000009
ORF83F3del2tTTt--11B.1.20.000009
ORF83F3del2TTt--t11B.1.214.20.0006
ORF83F3LTttCtt11B.1.214.20.0006
ORF83F3del1Ttt-tt11B.1.2210.000071
ORF83F3VTtTGtG11B.1.2210.000071
ORF83F3LTttCtt11B.1.2340.000132
ORF83F3FttTttC11B.1.2340.000132
ORF83F3LTttCtt11B.1.2390.001221
ORF83F3CtTttGt11B.1.2430.00007
ORF83F3LTttCtt11B.1.2430.00007
ORF83F3del1Ttt-tt11B.1.2580.000067
ORF83F3FttTttC11B.1.2580.000067
ORF83F3delTTT---11B.1.2580.000067
ORF83F3LTttCtt11B.1.2580.000067
ORF83F3del2TTt--t11B.1.2580.000067
ORF83F3HTTtCAt11B.1.3510.00003
ORF83F3delTTT---11B.1.3510.00003
ORF83F3del1Ttt-tt11B.1.36.290.000517
ORF83F3delTTT---11B.1.36.290.000517
ORF83F3LTttCtt11B.1.3800.006623
ORF83F3StTttCt11B.1.3900.010638
ORF83F3LTttCtt11B.1.3990.001934
ORF83F3del2TTt--t11B.1.4090.000781
ORF83F3LTttCtt11B.1.4270.00005
ORF83F3delTTT---11B.1.4290.000024
ORF83F3LTttCtt11B.1.4290.000024
ORF83F3LTttCtt11B.1.4590.004082
ORF83F3StTttCt11B.1.4680.005714
ORF83F3StTttCt11B.1.4690.00361
ORF83F3delTTT---11B.1.4700.001404
ORF83F3LTttCtt11B.1.4700.001404
ORF83F3YtTttAt11B.1.5080.025641
ORF83F3del2tTTt--11B.1.5090.000866
ORF83F3del1Ttt-tt11B.1.5210.004975
ORF83F3LTttCtt11B.1.5250.000113
ORF83F3FttTttC11B.1.5250.000113
ORF83F3delTTT---11B.1.5250.000113
ORF83F3CtTttGt11B.1.5250.000113
ORF83F3FttTttC11B.1.5260.000024
ORF83F3StTttCt11B.1.5260.000024
ORF83F3ITttAtt11B.1.5260.000024
ORF83F3LTttCtt11B.1.5260.000024
ORF83F3LTttCtt11B.1.5400.009709
ORF83F3StTttCt11B.1.5440.006024
ORF83F3del2TTt--t11B.1.5610.000397
ORF83F3ITttAtt11B.1.5650.00081
ORF83F3LTttCtt11B.1.5740.002151
ORF83F3LttTttA11B.1.575.20.004808
ORF83F3delTTT---11B.1.5760.000907
ORF83F3LTttCtt11B.1.5770.000687
ORF83F3LTttCtt11B.1.5800.004065
ORF83F3delTTT---11B.1.5820.000491
ORF83F3LTttCtt11B.1.5950.000261
ORF83F3ITttAtt11B.1.5960.000087
ORF83F3delTTT---11B.1.5960.000087
ORF83F3del1Ttt-tt11B.1.617.10.000129
ORF83F3StTttCt11B.1.617.10.000129
ORF83F3LTttCtt11B.1.617.10.000129
ORF83F3VTttGtt11B.1.617.20.000004
ORF83F3ITttAtt11B.1.617.20.000004
ORF83F3FttTttC11B.1.6200.000946
ORF83F3StTttCt11B.1.6210.000089
ORF83F3LTttCtt11B.1.621.10.000506
ORF83F3StTttCt11B.1.6250.002353
ORF83F3del1Ttt-tt11B.1.6250.002353
ORF83F3delTTT---11B.1.6280.000352
ORF83F3delTTT---11B.1.6300.005236
ORF83F3ITttAtt11B.230.002924
ORF83F3ITttAtt11B.30.000831
ORF83F3StTttCt11B.400.000364
ORF83F3CtTttGt11B.60.00091
ORF83F3ITttAtt11B.6.60.000889
ORF83F3delTTT---11C.260.007353
ORF83F3CtTttGt11C.36.30.000567
ORF83F3StTttCt11C.370.000116
ORF83F3delTTT---11C.370.000116
ORF83F3del2TTt--t11C.40.01
ORF83F3StTttCt11D.20.000075
ORF83F3LTttCtt11D.30.005917
ORF83F3delTTT---11N.60.007092
ORF83F3PTTtCCt11P.10.000016
ORF83F3FttTttC11P.10.000016
ORF83F3HTTtCAt11P.10.000016
ORF83F3TTTtACt11P.10.000016
ORF83F3RTTtCGt11P.10.000016
ORF83F3delTTT---11P.1.140.000048
ORF83F3LTttCtt11P.1.150.000232
ORF83F3StTttCt11P.1.170.000162
ORF83F3delTTT---11P.1.170.000162
ORF83F3DTTtGAt11P.1.170.000162
ORF83F3StTttCt11P.1.20.001156
ORF83F3LTttCtt11Q.70.001111
ORF83F3delTTT---11Q.80.000165
ORF83F3delTTT---11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.