CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 29

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF829Q29LnonsyncAacTa8538510.99765527978-27980
ORF829Q29LnonsynCAATTG85320.0023446727978-27980
ORF829Q29deldelCAA---543543127978-27980
ORF829Q29XnonsynCaaTaa2972950.99326627978-27980
ORF829Q29XnonsynCaATaG29720.0067340127978-27980
ORF829Q29RnonsyncAacGa1581530.96835427978-27980
ORF829Q29RnonsyncAAcGT15830.018987327978-27980
ORF829Q29RnonsynCAAAGG15810.0063291127978-27980
ORF829Q29RnonsyncAAcGG15810.0063291127978-27980
ORF829Q29QsyncaAcaG112112127978-27980
ORF829Q29HnonsyncaAcaC55500.90909127978-27980
ORF829Q29HnonsyncaAcaT5550.090909127978-27980
ORF829Q29KnonsynCaaAaa2121127978-27980
ORF829Q29EnonsynCaaGaa1212127978-27980
ORF829Q29PnonsyncAacCa66127978-27980
ORF829Q29del1delCaa-aa540.827978-27980
ORF829Q29del1delCAA-NN510.227978-27980
ORF829Q29YnonsynCaATaT33127978-27980
ORF829Q29FnonsynCAATTT22127978-27980
ORF829Q29TnonsynCAaACa11127978-27980

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF829Q29LcAacTa851853All0.000163
ORF829Q29LCAATTG2853All0
ORF829Q29delCAA---543543All0.000104
ORF829Q29XCaaTaa295297All0.000056
ORF829Q29XCaATaG2297All0
ORF829Q29LcAacTa219219B.1.6180.883065
ORF829Q29LcAacTa216216B.1.3110.059308
ORF829Q29LcAacTa209209AY.490.667732
ORF829Q29RcAacGa153158All0.000029
ORF829Q29RcAAcGT3158All0.000001
ORF829Q29RCAAAGG1158All0
ORF829Q29RcAAcGG1158All0
ORF829Q29QcaAcaG112112All0.000021
ORF829Q29delCAA---9393B.1.1.70.000083
ORF829Q29delCAA---7878AY.40.000121
ORF829Q29QcaAcaG7676B.1.1.70.000068
ORF829Q29XCaaTaa7373B.1.1.70.000065
ORF829Q29LcAacTa5656B.1.1.70.00005
ORF829Q29HcaAcaC5055All0.00001
ORF829Q29HcaAcaT555All0.000001
ORF829Q29RcAacGa5151P.1.170.00825
ORF829Q29delCAA---3939AY.290.000615
ORF829Q29delCAA---3434B.1.2430.002366
ORF829Q29delCAA---3333B.1.1.2220.006732
ORF829Q29HcaAcaC2727B.1.2430.001879
ORF829Q29LcAacTa2424AY.40.000037
ORF829Q29delCAA---2323B.1.10.000417
ORF829Q29delCAA---2222AY.1030.000137
ORF829Q29KCaaAaa2121All0.000004
ORF829Q29XCaaTaa2121B.1.10.000381
ORF829Q29XCaaTaa2121B.1.5400.203883
ORF829Q29delCAA---1818B0.002301
ORF829Q29XCaaTaa1717AY.430.000075
ORF829Q29RcAacGa1717AZ.20.013957
ORF829Q29LcAacTa1616AY.430.000071
ORF829Q29LcAacTa1515B.1.5820.00736
ORF829Q29XCaaTaa1414B.1.5170.005978
ORF829Q29XCaaTaa1313AY.250.000078
ORF829Q29XCaaTaa1313AY.40.00002
ORF829Q29delCAA---1313AY.480.006047
ORF829Q29RcAacGa1313B.1.617.20.000049
ORF829Q29ECaaGaa1212All0.000002
ORF829Q29HcaAcaC1012AY.1030.000062
ORF829Q29HcaAcaT212AY.1030.000012
ORF829Q29XCaaTaa1111AY.420.000443
ORF829Q29delCAA---1111B.10.000101
ORF829Q29delCAA---1010B.1.1600.000312
ORF829Q29RcAacGa99AY.46.40.001481
ORF829Q29LcAacTa99B.10.000082
ORF829Q29LcAacTa99B.1.617.20.000034
ORF829Q29delCAA---99B.1.617.20.000034
ORF829Q29LcAacTa88AY.250.000048
ORF829Q29XCaaTaa88B.10.000073
ORF829Q29delCAA---88B.1.1.2840.000859
ORF829Q29RcAacGa88B.1.20.00007
ORF829Q29RcAacGa88M.30.615385
ORF829Q29delCAA---77AY.440.000043
ORF829Q29delCAA---77B.1.1.2650.022082
ORF829Q29delCAA---77B.1.20.000062
ORF829Q29XCaaTaa77B.1.20.000062
ORF829Q29delCAA---77B.1.36.160.009972
ORF829Q29delCAA---77P.10.00011
ORF829Q29delCAA---77P.1.140.000335
ORF829Q29PcAacCa66All0.000001
ORF829Q29delCAA---66AY.29.10.001323
ORF829Q29delCAA---66AY.30.00006
ORF829Q29XCaaTaa66AY.30.00006
ORF829Q29QcaAcaG66B.1.1.5190.000238
ORF829Q29delCAA---66B.1.1770.000079
ORF829Q29delCAA---66B.1.243.20.086957
ORF829Q29del1Caa-aa45All0.000001
ORF829Q29del1CAA-NN15All0
ORF829Q29LcAacTa55AY.20.001781
ORF829Q29KCaaAaa55AY.40.000008
ORF829Q29LcAacTa55B.1.1.2840.000537
ORF829Q29HcaAcaC55B.1.1.70.000004
ORF829Q29RcAacGa55B.1.177.560.003338
ORF829Q29XCaaTaa55B.1.5250.000566
ORF829Q29delCAA---44AY.340.000388
ORF829Q29XCaaTaa44AY.9.20.000147
ORF829Q29delCAA---44B.1.1.5190.000159
ORF829Q29PcAacCa44B.1.177.120.000607
ORF829Q29KCaaAaa44B.1.617.20.000015
ORF829Q29YCaATaT33All0.000001
ORF829Q29delCAA---33AY.1000.000138
ORF829Q29RcAacGa33AY.120.000948
ORF829Q29XCaaTaa33AY.1200.000112
ORF829Q29LcAacTa33AY.1210.000406
ORF829Q29XCaaTaa33AY.200.000117
ORF829Q29delCAA---33AY.250.000018
ORF829Q29RcAacGa33AY.250.000018
ORF829Q29QcaAcaG33AY.250.000018
ORF829Q29XCaaTaa33AY.270.000194
ORF829Q29RcAacGa33AY.390.000074
ORF829Q29QcaAcaG33AY.40.000005
ORF829Q29RcAacGa33AY.40.000005
ORF829Q29QcaAcaG33AY.420.000121
ORF829Q29delCAA---33AY.430.000013
ORF829Q29XCaaTaa33AY.440.000018
ORF829Q29XCaaTaa33AY.980.000237
ORF829Q29RcAacGa33B.10.000027
ORF829Q29ECaaGaa33B.1.10.000054
ORF829Q29LcAacTa33B.1.10.000054
ORF829Q29del1Caa-aa23B.1.1.70.000002
ORF829Q29RcAacGa23B.1.1.70.000002
ORF829Q29RcAAcGG13B.1.1.70.000001
ORF829Q29del1CAA-NN13B.1.1.70.000001
ORF829Q29XCaaTaa33B.1.160.310.024194
ORF829Q29QcaAcaG33B.1.2400.000647
ORF829Q29XCaaTaa33B.1.3200.003736
ORF829Q29delCAA---33B.1.4290.000071
ORF829Q29delCAA---33B.1.5090.002597
ORF829Q29delCAA---33B.1.5260.000071
ORF829Q29XCaaTaa33B.1.617.20.000011
ORF829Q29RcAacGa33P.10.000047
ORF829Q29delCAA---33P.1.10.000953
ORF829Q29delCAA---33P.1.170.000485
ORF829Q29YCaATaT220.111111
ORF829Q29delCAA---220.111111
ORF829Q29RcAAcGT220.111111
ORF829Q29FCAATTT220.111111
ORF829Q29KCaaAaa220.111111
ORF829Q29LCAATTG220.111111
ORF829Q29XCaATaG220.111111
ORF829Q29delCAA---22A.2.20.003378
ORF829Q29FCAATTT22All0
ORF829Q29LcAacTa22AY.1020.000053
ORF829Q29RcAacGa22AY.1030.000012
ORF829Q29XCaaTaa22AY.1030.000012
ORF829Q29LcAacTa22AY.110.002677
ORF829Q29delCAA---22AY.1140.000462
ORF829Q29LcAacTa22AY.116.10.000623
ORF829Q29LcAacTa22AY.1170.000169
ORF829Q29delCAA---22AY.1180.000125
ORF829Q29QcaAcaG22AY.1190.000071
ORF829Q29LcAacTa22AY.130.000322
ORF829Q29LcAacTa22AY.220.004184
ORF829Q29delCAA---22AY.260.000057
ORF829Q29QcaAcaG22AY.30.00002
ORF829Q29HcaAcaC22AY.40.000003
ORF829Q29PcAacCa22AY.40.000003
ORF829Q29HcaAcaC22AY.430.000009
ORF829Q29LcAacTa22AY.440.000012
ORF829Q29delCAA---22AY.470.000062
ORF829Q29LcAacTa22AY.650.001066
ORF829Q29LcAacTa22AY.700.000417
ORF829Q29delCAA---22AY.840.000875
ORF829Q29XCaaTaa22B.1.1.1980.002937
ORF829Q29delCAA---22B.1.1.2140.000111
ORF829Q29XCaaTaa22B.1.1.250.001137
ORF829Q29XCaaTaa22B.1.1.280.000622
ORF829Q29LcAacTa22B.1.1.390.001019
ORF829Q29XCaaTaa22B.1.1.5190.000079
ORF829Q29ECaaGaa22B.1.1.70.000002
ORF829Q29delCAA---22B.1.1260.002551
ORF829Q29XCaaTaa22B.1.1600.000062
ORF829Q29XCaaTaa22B.1.1770.000026
ORF829Q29LcAacTa22B.1.360.000292
ORF829Q29delCAA---22B.1.360.000292
ORF829Q29HcaAcaC22B.1.4160.002538
ORF829Q29XCaaTaa22B.1.466.20.000782
ORF829Q29XCaaTaa22B.1.5960.000174
ORF829Q29QcaAcaG22B.1.6320.013423
ORF829Q29delCAA---22B.400.000729
ORF829Q29XCaaTaa22C.350.001548
ORF829Q29delCAA---22P.1.150.000465
ORF829Q29XCaaTaa11A.20.000662
ORF829Q29HcaAcaT11A.2.40.003367
ORF829Q29delCAA---11A.2.50.000499
ORF829Q29delCAA---11A.23.10.000704
ORF829Q29delCAA---11AE.40.043478
ORF829Q29TCAaACa11All0
ORF829Q29RcAacGa11AY.1000.000046
ORF829Q29delCAA---11AY.1020.000027
ORF829Q29XCaaTaa11AY.1020.000027
ORF829Q29LcAacTa11AY.1030.000006
ORF829Q29delCAA---11AY.1080.001103
ORF829Q29LcAacTa11AY.1140.000231
ORF829Q29XCaaTaa11AY.1150.005208
ORF829Q29XCaaTaa11AY.1170.000085
ORF829Q29QcaAcaG11AY.1170.000085
ORF829Q29XCaaTaa11AY.1180.000063
ORF829Q29KCaaAaa11AY.1190.000035
ORF829Q29XCaaTaa11AY.1190.000035
ORF829Q29RcAacGa11AY.1200.000037
ORF829Q29LcAacTa11AY.1200.000037
ORF829Q29RcAacGa11AY.160.00038
ORF829Q29QcaAcaG11AY.200.000039
ORF829Q29XCaaTaa11AY.210.001898
ORF829Q29ECaaGaa11AY.250.000006
ORF829Q29del1Caa-aa11AY.250.000006
ORF829Q29RcAacGa11AY.260.000028
ORF829Q29XCaaTaa11AY.290.000016
ORF829Q29RcAacGa11AY.290.000016
ORF829Q29RcAacGa11AY.30.00001
ORF829Q29LcAacTa11AY.30.00001
ORF829Q29delCAA---11AY.3.10.000085
ORF829Q29XCaaTaa11AY.390.000025
ORF829Q29del1Caa-aa11AY.40.000002
ORF829Q29LcAacTa11AY.4.20.000022
ORF829Q29delCAA---11AY.4.20.000022
ORF829Q29RcAacGa11AY.4.20.000022
ORF829Q29XCaaTaa11AY.4.40.000409
ORF829Q29KCaaAaa11AY.420.00004
ORF829Q29KCaaAaa11AY.430.000004
ORF829Q29RcAacGa11AY.430.000004
ORF829Q29QcaAcaG11AY.440.000006
ORF829Q29XCaaTaa11AY.450.000122
ORF829Q29LcAacTa11AY.460.000104
ORF829Q29XCaaTaa11AY.460.000104
ORF829Q29LcAacTa11AY.46.20.000635
ORF829Q29LcAacTa11AY.46.40.000165
ORF829Q29LcAacTa11AY.46.60.000072
ORF829Q29delCAA---11AY.50.000021
ORF829Q29LcAacTa11AY.540.000095
ORF829Q29XCaaTaa11AY.60.000041
ORF829Q29XCaaTaa11AY.610.000105
ORF829Q29LcAacTa11AY.660.00107
ORF829Q29delCAA---11AY.670.000464
ORF829Q29RcAacGa11AY.7.10.000113
ORF829Q29delCAA---11AY.90.000068
ORF829Q29LcAacTa11AY.9.10.000084
ORF829Q29HcaAcaT11AY.9.10.000084
ORF829Q29RcAacGa11AY.930.000273
ORF829Q29XCaaTaa11AY.960.002075
ORF829Q29LcAacTa11AY.980.000079
ORF829Q29XCaaTaa11AY.98.10.000048
ORF829Q29XCaaTaa11AY.990.001049
ORF829Q29delCAA---11AY.99.10.001553
ORF829Q29RcAacGa11AY.99.20.000092
ORF829Q29XCaaTaa11B0.000128
ORF829Q29LcAacTa11B0.000128
ORF829Q29TCAaACa11B.10.000009
ORF829Q29HcaAcaC11B.10.000009
ORF829Q29KCaaAaa11B.10.000009
ORF829Q29ECaaGaa11B.10.000009
ORF829Q29KCaaAaa11B.1.10.000018
ORF829Q29QcaAcaG11B.1.10.000018
ORF829Q29RCAAAGG11B.1.10.000018
ORF829Q29XCaaTaa11B.1.1.10.000327
ORF829Q29LcAacTa11B.1.1.10.000327
ORF829Q29XCaaTaa11B.1.1.1710.003676
ORF829Q29delCAA---11B.1.1.1740.003378
ORF829Q29RcAacGa11B.1.1.1940.00495
ORF829Q29XCaaTaa11B.1.1.2160.00089
ORF829Q29delCAA---11B.1.1.2160.00089
ORF829Q29delCAA---11B.1.1.250.000569
ORF829Q29ECaaGaa11B.1.1.2820.011628
ORF829Q29RcAacGa11B.1.1.2940.001266
ORF829Q29XCaaTaa11B.1.1.3060.000438
ORF829Q29KCaaAaa11B.1.1.3120.001912
ORF829Q29ECaaGaa11B.1.1.3170.000412
ORF829Q29RcAacGa11B.1.1.3180.000302
ORF829Q29delCAA---11B.1.1.3540.004386
ORF829Q29XCaaTaa11B.1.1.3690.000446
ORF829Q29RcAacGa11B.1.1.3940.02439
ORF829Q29XCaaTaa11B.1.1.3980.003226
ORF829Q29KCaaAaa11B.1.1.440.00241
ORF829Q29LcAacTa11B.1.1.4500.034483
ORF829Q29LcAacTa11B.1.1.460.004367
ORF829Q29KCaaAaa11B.1.1.5230.001563
ORF829Q29LcAacTa11B.1.1600.000031
ORF829Q29LcAacTa11B.1.1660.008475
ORF829Q29ECaaGaa11B.1.1770.000013
ORF829Q29QcaAcaG11B.1.177.210.000076
ORF829Q29LcAacTa11B.1.177.330.001645
ORF829Q29delCAA---11B.1.177.520.001757
ORF829Q29LcAacTa11B.1.177.520.001757
ORF829Q29KCaaAaa11B.1.177.600.000218
ORF829Q29delCAA---11B.1.177.630.002703
ORF829Q29delCAA---11B.1.177.70.000165
ORF829Q29delCAA---11B.1.177.830.001481
ORF829Q29RcAacGa11B.1.177.860.000183
ORF829Q29delCAA---11B.1.1950.005025
ORF829Q29QcaAcaG11B.1.20.000009
ORF829Q29delCAA---11B.1.2100.002132
ORF829Q29RcAacGa11B.1.2210.000071
ORF829Q29XCaaTaa11B.1.2210.000071
ORF829Q29XCaaTaa11B.1.2370.004975
ORF829Q29XCaaTaa11B.1.2580.000067
ORF829Q29delCAA---11B.1.2580.000067
ORF829Q29delCAA---11B.1.258.120.007874
ORF829Q29YCaATaT11B.1.258.170.000104
ORF829Q29delCAA---11B.1.258.170.000104
ORF829Q29RcAacGa11B.1.2840.013158
ORF829Q29XCaaTaa11B.1.3510.00003
ORF829Q29HcaAcaC11B.1.3510.00003
ORF829Q29ECaaGaa11B.1.3510.00003
ORF829Q29delCAA---11B.1.351.20.000303
ORF829Q29XCaaTaa11B.1.36.290.000517
ORF829Q29HcaAcaT11B.1.36.290.000517
ORF829Q29LcAacTa11B.1.36.310.001751
ORF829Q29XCaaTaa11B.1.36.360.000602
ORF829Q29RcAacGa11B.1.36.360.000602
ORF829Q29XCaaTaa11B.1.3660.004878
ORF829Q29KCaaAaa11B.1.3660.004878
ORF829Q29XCaaTaa11B.1.3690.000285
ORF829Q29LcAacTa11B.1.3910.001127
ORF829Q29QcaAcaG11B.1.4270.00005
ORF829Q29LcAacTa11B.1.438.10.000107
ORF829Q29LcAacTa11B.1.4530.003236
ORF829Q29LcAacTa11B.1.4560.003268
ORF829Q29QcaAcaG11B.1.4650.003802
ORF829Q29delCAA---11B.1.4680.005714
ORF829Q29ECaaGaa11B.1.4970.000315
ORF829Q29LcAacTa11B.1.5250.000113
ORF829Q29LcAacTa11B.1.5260.000024
ORF829Q29RcAacGa11B.1.5770.000687
ORF829Q29QcaAcaG11B.1.5960.000087
ORF829Q29XCaaTaa11B.1.5970.00463
ORF829Q29QcaAcaG11B.1.6090.000479
ORF829Q29LcAacTa11B.1.617.10.000129
ORF829Q29QcaAcaG11B.1.617.20.000004
ORF829Q29RcAAcGT11B.1.6200.000946
ORF829Q29LcAacTa11B.1.6210.000089
ORF829Q29XCaaTaa11B.1.6370.000073
ORF829Q29delCAA---11C.260.007353
ORF829Q29delCAA---11N.30.005814
ORF829Q29XCaaTaa11N.50.001767
ORF829Q29delCAA---11N.60.007092
ORF829Q29QcaAcaG11P.10.000016
ORF829Q29XCaaTaa11P.10.000016
ORF829Q29LcAacTa11P.1.120.000484
ORF829Q29delCAA---11P.1.120.000484
ORF829Q29XCaaTaa11P.60.003145
ORF829Q29XCaaTaa11Q.80.000165
ORF829Q29LcAacTa11R.10.00009