CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 24 & Codon = tTa

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF824S24LnonsyntCatTa1416521416020.99964727963-27965

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF824S24LtCatTa141602141652All0.027083
ORF824S24LtCatTa109728109767B.1.20.966196
ORF824S24LtCatTa99529952B.1.5960.867201
ORF824S24LtCatTa79677974B.10.072974
ORF824S24LtCatTa36293629B.1.5950.947025
ORF824S24LtCatTa14211421B.1.5770.976632
ORF824S24LtCatTa10801080B.1.5880.982712
ORF824S24LtCatTa10541054B.1.160.160.979554
ORF824S24LtCatTa942942B.1.4260.950555
ORF824S24LtCatTa761761B.1.2650.966963
ORF824S24LtCatTa519519B.1.5870.98482
ORF824S24LtCatTa361361B.1.3360.880488
ORF824S24LtCatTa300300B.1.4250.898204
ORF824S24LtCatTa288288B.1.5670.96
ORF824S24LtCatTa237237B.1.10.004299
ORF824S24LtCatTa202202B.1.5900.918182
ORF824S24LtCatTa188188B.1.5210.935323
ORF824S24LtCatTa167167B.1.3010.988166
ORF824S24LtCatTa148148B.1.595.10.865497
ORF824S24LtCatTa146146B.1.1600.004553
ORF824S24LtCatTa137137B.1.595.41
ORF824S24LtCatTa129129B.1.5890.977273
ORF824S24LtCatTa120120B.1.3700.96
ORF824S24LtCatTa117117B.1.4240.943548
ORF824S24LtCatTa114114AB.10.934426
ORF824S24LtCatTa9898B.1.4231
ORF824S24LtCatTa9393B.1.5910.989362
ORF824S24LtCatTa8888B.1.4351
ORF824S24LtCatTa8787B.1.5930.945652
ORF824S24LtCatTa7878B.1.4500.886364
ORF824S24LtCatTa7373B.4.50.869048
ORF824S24LtCatTa7070B.1.2430.004871
ORF824S24LtCatTa6363B.1.2840.828947
ORF824S24LtCatTa5353B.1.177.730.030011
ORF824S24LtCatTa4444B.1.2340.005806
ORF824S24LtCatTa4142B.1.1.70.000037
ORF824S24LtCatTa4141B.1.4290.000965
ORF824S24LtCatTa4141B.1.5660.788462
ORF824S24LtCatTa4040B.1.177.120.006068
ORF824S24LtCatTa3838B.1.595.31
ORF824S24LtCatTa3636B.1.438.10.003861
ORF824S24LtCatTa3434B.1.5260.000799
ORF824S24LtCatTa3333B.1.5800.134146
ORF824S24LtCatTa3030B.1.2210.002131
ORF824S24LtCatTa3030B.1.5940.9375
ORF824S24LtCatTa2626B.1.588.11
ORF824S24LtCatTa2525B.1.5921
ORF824S24LtCatTa2222B.1.1.3350.285714
ORF824S24LtCatTa2222B.1.177.440.011417
ORF824S24LtCatTa2222B.1.3690.006275
ORF824S24LtCatTa2222B.1.5760.019946
ORF824S24LtCatTa2121B0.002684
ORF824S24LtCatTa2121B.1.1.2220.004284
ORF824S24LtCatTa2020B.1.3960.014114
ORF824S24LtCatTa1919AY.440.000116
ORF824S24LtCatTa1818B.1.595.20.72
ORF824S24LtCatTa1717B.1.3110.004668
ORF824S24LtCatTa1717B.1.3610.021907
ORF824S24LtCatTa1515AY.30.000149
ORF824S24LtCatTa1415B.1.2060.011419
ORF824S24LtCatTa1414B.1.1.5190.000556
ORF824S24LtCatTa1414B.1.3670.011094
ORF824S24LtCatTa1313B.1.4270.000656
ORF824S24LtCatTa1212B.1.1770.000158
ORF824S24LtCatTa1212B.1.5640.005111
ORF824S24LtCatTa1212B.1.617.20.000045
ORF824S24LtCatTa1111B.1.5820.005397
ORF824S24LtCatTa1010AY.40.000016
ORF824S24LtCatTa1010B.1.3750.008197
ORF824S24LtCatTa1010B.1.621.10.005058
ORF824S24LtCatTa99B.1.1.2650.028391
ORF824S24LtCatTa88B.1.1.5070.069565
ORF824S24LtCatTa88B.1.1260.010204
ORF824S24LtCatTa88B.1.3620.012327
ORF824S24LtCatTa88B.1.5170.003416
ORF824S24LtCatTa77AY.1030.000043
ORF824S24LtCatTa77B.1.3490.005004
ORF824S24LtCatTa66B.1.160.140.012712
ORF824S24LtCatTa66B.1.2400.001293
ORF824S24LtCatTa55B.1.1.280.001556
ORF824S24LtCatTa55B.1.2640.061728
ORF824S24LtCatTa55B.1.3020.066667
ORF824S24LtCatTa55B.1.6120.013263
ORF824S24LtCatTa55P.10.000079
ORF824S24LtCatTa44AY.330.000267
ORF824S24LtCatTa44B.1.1390.002933
ORF824S24LtCatTa44B.1.3240.006421
ORF824S24LtCatTa44B.1.3300.114286
ORF824S24LtCatTa44B.1.4460.08
ORF824S24LtCatTa44B.1.6060.024096
ORF824S24LtCatTa44B.1.6210.000354
ORF824S24LtCatTa44B.1.780.034188
ORF824S24LtCatTa44P.1.170.000647
ORF824S24LtCatTa33AY.250.000018
ORF824S24LtCatTa33AY.430.000013
ORF824S24LtCatTa33B.1.1.5260.010638
ORF824S24LtCatTa33B.1.177.520.005272
ORF824S24LtCatTa33B.1.2100.006397
ORF824S24LtCatTa33B.1.2140.010989
ORF824S24LtCatTa33B.1.2580.0002
ORF824S24LtCatTa33B.1.2600.010033
ORF824S24LtCatTa33B.1.2980.006342
ORF824S24LtCatTa33B.1.3380.025862
ORF824S24LtCatTa33B.1.3540.130435
ORF824S24LtCatTa33B.1.4000.001287
ORF824S24LtCatTa33B.1.4130.012766
ORF824S24LtCatTa33B.1.5500.041096
ORF824S24LtCatTa33B.1.88.10.014423
ORF824S24LtCatTa33B.1.9.50.017045
ORF824S24LtCatTa33P.1.120.001452
ORF824S24LtCatTa33R.10.00027
ORF824S24LtCatTa22A.10.000564
ORF824S24LtCatTa12A.2.40.003367
ORF824S24LtCatTa22A.210.00554
ORF824S24LtCatTa22A.30.004193
ORF824S24LtCatTa22AY.420.00008
ORF824S24LtCatTa22B.1.1.1610.007067
ORF824S24LtCatTa22B.1.1.2100.011429
ORF824S24LtCatTa22B.1.1.2200.003717
ORF824S24LtCatTa22B.1.1.2510.015873
ORF824S24LtCatTa22B.1.1.390.001019
ORF824S24LtCatTa22B.1.1.4160.00181
ORF824S24LtCatTa22B.1.1.500.001358
ORF824S24LtCatTa22B.1.1040.00738
ORF824S24LtCatTa22B.1.1100.00905
ORF824S24LtCatTa22B.1.1110.00235
ORF824S24LtCatTa22B.1.1570.00597
ORF824S24LtCatTa22B.1.177.60.001953
ORF824S24LtCatTa22B.1.177.600.000437
ORF824S24LtCatTa22B.1.2120.033333
ORF824S24LtCatTa22B.1.2230.005556
ORF824S24LtCatTa22B.1.2320.001075
ORF824S24LtCatTa22B.1.2390.002442
ORF824S24LtCatTa12B.1.258.170.000104
ORF824S24LtCatTa22B.1.3050.004301
ORF824S24LtCatTa22B.1.3060.011429
ORF824S24LtCatTa22B.1.3330.021053
ORF824S24LtCatTa22B.1.3400.008584
ORF824S24LtCatTa22B.1.360.000292
ORF824S24LtCatTa22B.1.3660.009756
ORF824S24LtCatTa22B.1.3950.014085
ORF824S24LtCatTa22B.1.4040.002604
ORF824S24LtCatTa22B.1.4280.002041
ORF824S24LtCatTa22B.1.4390.011834
ORF824S24LtCatTa22B.1.4430.009346
ORF824S24LtCatTa22B.1.5090.001732
ORF824S24LtCatTa22B.1.5270.007407
ORF824S24LtCatTa22B.1.5610.000794
ORF824S24LtCatTa22B.1.5650.001621
ORF824S24LtCatTa22B.1.5690.028986
ORF824S24LtCatTa22B.1.6090.000959
ORF824S24LtCatTa22B.1.940.054054
ORF824S24LtCatTa22B.40.004415
ORF824S24LtCatTa22B.4.10.037736
ORF824S24LtCatTa22P.1.10.000635
ORF824S24LtCatTa22P.1.100.000539
ORF824S24LtCatTa110.055556
ORF824S24LtCatTa11A0.000387
ORF824S24LtCatTa11A.2.5.20.001572
ORF824S24LtCatTa11AY.1000.000046
ORF824S24LtCatTa11AY.1200.000037
ORF824S24LtCatTa11AY.140.000088
ORF824S24LtCatTa11AY.4.50.000107
ORF824S24LtCatTa11AY.460.000104
ORF824S24LtCatTa11AY.46.10.001027
ORF824S24LtCatTa11AY.60.000041
ORF824S24LtCatTa11AY.750.000056
ORF824S24LtCatTa11AY.860.00083
ORF824S24LtCatTa11AY.98.10.000048
ORF824S24LtCatTa11B.1.1.1180.010204
ORF824S24LtCatTa11B.1.1.1210.002427
ORF824S24LtCatTa11B.1.1.1220.045455
ORF824S24LtCatTa11B.1.1.1230.017857
ORF824S24LtCatTa11B.1.1.1350.004695
ORF824S24LtCatTa11B.1.1.1480.008772
ORF824S24LtCatTa11B.1.1.1710.003676
ORF824S24LtCatTa11B.1.1.1770.019231
ORF824S24LtCatTa11B.1.1.1920.002309
ORF824S24LtCatTa11B.1.1.2160.00089
ORF824S24LtCatTa11B.1.1.2300.009174
ORF824S24LtCatTa11B.1.1.2440.015385
ORF824S24LtCatTa11B.1.1.2580.003257
ORF824S24LtCatTa11B.1.1.2770.000759
ORF824S24LtCatTa11B.1.1.3040.002809
ORF824S24LtCatTa11B.1.1.3160.000925
ORF824S24LtCatTa11B.1.1.3500.04
ORF824S24LtCatTa11B.1.1.3560.008547
ORF824S24LtCatTa11B.1.1.3700.012658
ORF824S24LtCatTa11B.1.1.3720.000689
ORF824S24LtCatTa11B.1.1.4210.030303
ORF824S24LtCatTa11B.1.1.4340.000349
ORF824S24LtCatTa11B.1.1.440.00241
ORF824S24LtCatTa11B.1.1.4610.012048
ORF824S24LtCatTa11B.1.1.4800.025
ORF824S24LtCatTa11B.1.1.5180.006329
ORF824S24LtCatTa11B.1.1.700.000341
ORF824S24LtCatTa11B.1.1.720.030303
ORF824S24LtCatTa11B.1.1030.019231
ORF824S24LtCatTa11B.1.110.30.000718
ORF824S24LtCatTa11B.1.1280.000635
ORF824S24LtCatTa11B.1.1430.021277
ORF824S24LtCatTa11B.1.177.100.000878
ORF824S24LtCatTa11B.1.177.540.000606
ORF824S24LtCatTa11B.1.1890.004292
ORF824S24LtCatTa11B.1.1940.04
ORF824S24LtCatTa11B.1.1990.004132
ORF824S24LtCatTa11B.1.2110.025
ORF824S24LtCatTa11B.1.2290.009709
ORF824S24LtCatTa11B.1.2360.002053
ORF824S24LtCatTa11B.1.2410.000812
ORF824S24LtCatTa11B.1.258.230.02381
ORF824S24LtCatTa11B.1.2790.000514
ORF824S24LtCatTa11B.1.2810.021739
ORF824S24LtCatTa11B.1.3250.006897
ORF824S24LtCatTa11B.1.3260.007576
ORF824S24LtCatTa11B.1.3280.03125
ORF824S24LtCatTa11B.1.3430.020833
ORF824S24LtCatTa11B.1.3510.00003
ORF824S24LtCatTa11B.1.36.380.001642
ORF824S24LtCatTa11B.1.3600.012658
ORF824S24LtCatTa11B.1.3630.012987
ORF824S24LtCatTa11B.1.3780.006849
ORF824S24LtCatTa11B.1.3800.006623
ORF824S24LtCatTa11B.1.3970.004854
ORF824S24LtCatTa11B.1.400.10.015152
ORF824S24LtCatTa11B.1.4090.000781
ORF824S24LtCatTa11B.1.4160.001269
ORF824S24LtCatTa11B.1.4170.028571
ORF824S24LtCatTa11B.1.4320.011236
ORF824S24LtCatTa11B.1.4330.003195
ORF824S24LtCatTa11B.1.4370.020833
ORF824S24LtCatTa11B.1.4530.003236
ORF824S24LtCatTa11B.1.4590.004082
ORF824S24LtCatTa11B.1.4730.019231
ORF824S24LtCatTa11B.1.5330.009615
ORF824S24LtCatTa11B.1.5410.004425
ORF824S24LtCatTa11B.1.5460.003704
ORF824S24LtCatTa11B.1.5560.007519
ORF824S24LtCatTa11B.1.5580.004566
ORF824S24LtCatTa11B.1.5680.001111
ORF824S24LtCatTa11B.1.5720.025
ORF824S24LtCatTa11B.1.5740.002151
ORF824S24LtCatTa11B.1.5750.000303
ORF824S24LtCatTa11B.1.5810.009434
ORF824S24LtCatTa11B.1.5990.00365
ORF824S24LtCatTa11B.1.6110.04
ORF824S24LtCatTa11B.1.6230.000536
ORF824S24LtCatTa11B.1.670.043478
ORF824S24LtCatTa11B.30.000831
ORF824S24LtCatTa11C.36.30.000567
ORF824S24LtCatTa11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.