CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 21

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF821S21deldelAGT---18171817127954-27956
ORF821S21InonsynaGtaTt137013690.9992727954-27956
ORF821S21InonsynaGTaTC137010.00072992727954-27956
ORF821S21NnonsynaGtaAt12941294127954-27956
ORF821S21SsynagTagC133133127954-27956
ORF821S21GnonsynAgtGgt106106127954-27956
ORF821S21del2delAGt--t75560.74666727954-27956
ORF821S21del2delAGT--N75190.25333327954-27956
ORF821S21RnonsynagTagG52280.53846227954-27956
ORF821S21RnonsynagTagA52200.38461527954-27956
ORF821S21RnonsynAgtCgt5230.057692327954-27956
ORF821S21RnonsynAgTCgA5210.019230827954-27956
ORF821S21CnonsynAgtTgt88127954-27956
ORF821S21del1delagTag-850.62527954-27956
ORF821S21del1delAgT-gA830.37527954-27956
ORF821S21TnonsynaGtaCt66127954-27956
ORF821S21DnonsynAGTGAC210.527954-27956
ORF821S21DnonsynAGtGAt210.527954-27956
ORF821S21VnonsynAGtGTt11127954-27956
ORF821S21FnonsynAGtTTt11127954-27956

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF821S21delAGT---18171817All0.000348
ORF821S21IaGtaTt13691370All0.000262
ORF821S21IaGTaTC11370All0
ORF821S21NaGtaAt12941294All0.000247
ORF821S21delAGT---12341234B.1.6230.662017
ORF821S21IaGtaTt983983AY.30.009777
ORF821S21NaGtaAt364364B.1.1390.266862
ORF821S21NaGtaAt270270B.1.3690.077011
ORF821S21NaGtaAt250250B.1.1.70.000224
ORF821S21SagTagC133133All0.000025
ORF821S21GAgtGgt106106All0.00002
ORF821S21delAGT---9696B.1.1.70.000086
ORF821S21SagTagC8282B.1.6370.005992
ORF821S21NaGtaAt7979AY.250.000475
ORF821S21del2AGt--t5675All0.000011
ORF821S21del2AGT--N1975All0.000004
ORF821S21del2AGt--t5069B.1.6230.026824
ORF821S21del2AGT--N1969B.1.6230.010193
ORF821S21delAGT---6868AY.40.000106
ORF821S21NaGtaAt6363B.1.4441
ORF821S21IaGtaTt5353AY.1030.000329
ORF821S21RagTagG2852All0.000005
ORF821S21RagTagA2052All0.000004
ORF821S21RAgtCgt352All0.000001
ORF821S21RAgTCgA152All0
ORF821S21IaGtaTt4747AY.430.000208
ORF821S21delAGT---4747B.1.2430.00327
ORF821S21IaGtaTt4444B.1.1.70.000039
ORF821S21delAGT---3939AY.290.000615
ORF821S21GAgtGgt3939B.1.1.70.000035
ORF821S21IaGtaTt3939B.1.617.20.000147
ORF821S21NaGtaAt3636B.1.617.20.000136
ORF821S21NaGtaAt3535AY.200.00136
ORF821S21IaGtaTt3535AY.40.000054
ORF821S21delAGT---3333B.1.1.2220.006732
ORF821S21NaGtaAt2929AY.440.000177
ORF821S21NaGtaAt2828B.1.1.1890.04236
ORF821S21NaGtaAt2525B.10.000229
ORF821S21delAGT---2525B.10.000229
ORF821S21delAGT---2323B.1.10.000417
ORF821S21IaGtaTt1919B.1.1.5190.000755
ORF821S21RagTagG1818AY.1030.000112
ORF821S21delAGT---1818B0.002301
ORF821S21NaGtaAt1515AY.1020.000398
ORF821S21NaGtaAt1414AY.40.000022
ORF821S21delAGT---1414AY.480.006512
ORF821S21IaGtaTt1414P.1.140.000669
ORF821S21RagTagA1313B.1.6230.006974
ORF821S21IaGtaTt1212B.1.1.4330.017094
ORF821S21GAgtGgt1111B.1.617.20.000041
ORF821S21IaGtaTt1010AY.440.000061
ORF821S21IaGtaTt99AY.1020.000239
ORF821S21IaGtaTt99AY.1040.017857
ORF821S21delAGT---99B.1.1600.000281
ORF821S21delAGT---99B.1.1770.000119
ORF821S21CAgtTgt88All0.000002
ORF821S21del1agTag-58All0.000001
ORF821S21del1AgT-gA38All0.000001
ORF821S21NaGtaAt88AY.760.038647
ORF821S21delAGT---88B.1.20.00007
ORF821S21NaGtaAt77AY.1180.000439
ORF821S21NaGtaAt77AY.390.000173
ORF821S21delAGT---77AY.440.000043
ORF821S21delAGT---77AZ.50.024561
ORF821S21delAGT---77B.1.1.2650.022082
ORF821S21NaGtaAt77B.1.20.000062
ORF821S21delAGT---77B.1.36.160.009972
ORF821S21delAGT---77P.10.00011
ORF821S21delAGT---77P.1.140.000335
ORF821S21TaGtaCt66All0.000001
ORF821S21IaGtaTt66AY.290.000095
ORF821S21delAGT---66AY.29.10.001323
ORF821S21delAGT---66AY.30.00006
ORF821S21delAGT---66AY.3.10.000512
ORF821S21IaGtaTt66AY.390.000148
ORF821S21GAgtGgt66AY.40.000009
ORF821S21delAGT---66B.1.243.20.086957
ORF821S21GAgtGgt66B.1.4290.000141
ORF821S21delAGT---66B.1.5260.000141
ORF821S21delAGT---66B.1.617.20.000023
ORF821S21SagTagC55AY.1030.000031
ORF821S21IaGtaTt55AY.230.000349
ORF821S21IaGtaTt55AY.250.00003
ORF821S21delAGT---55AY.430.000022
ORF821S21GAgtGgt55B.10.000046
ORF821S21SagTagC55B.1.3960.003529
ORF821S21SagTagC55P.1.150.001162
ORF821S21IaGtaTt340.166667
ORF821S21IaGTaTC140.055556
ORF821S21NaGtaAt44AY.10.001583
ORF821S21GAgtGgt44AY.1030.000025
ORF821S21SagTagC44AY.1180.000251
ORF821S21IaGtaTt44AY.1190.000141
ORF821S21GAgtGgt44AY.200.000155
ORF821S21NaGtaAt44AY.230.000279
ORF821S21GAgtGgt44AY.290.000063
ORF821S21NaGtaAt44AY.330.000267
ORF821S21delAGT---44AY.340.000388
ORF821S21IaGtaTt44AY.360.000593
ORF821S21IaGtaTt44AY.730.002661
ORF821S21IaGtaTt44B.1.10.000073
ORF821S21IaGtaTt44B.1.1.2160.003562
ORF821S21delAGT---44B.1.1.5190.000159
ORF821S21RagTagA24B.1.1.70.000002
ORF821S21RagTagG24B.1.1.70.000002
ORF821S21NaGtaAt44B.1.1190.042105
ORF821S21NaGtaAt44B.1.3510.000119
ORF821S21delAGT---44B.1.3670.00317
ORF821S21delAGT---44B.1.4290.000094
ORF821S21IaGtaTt44B.1.5960.000349
ORF821S21NaGtaAt44C.370.000464
ORF821S21delAGT---44P.1.10.001271
ORF821S21TaGtaCt33AY.200.000117
ORF821S21RagTagG33AY.250.000018
ORF821S21delAGT---33AY.4.20.000065
ORF821S21NaGtaAt33AY.430.000013
ORF821S21GAgtGgt33AY.440.000018
ORF821S21NaGtaAt33AY.50.000062
ORF821S21IaGtaTt33AY.50.000062
ORF821S21delAGT---33AY.98.10.000145
ORF821S21GAgtGgt33AY.990.003148
ORF821S21SagTagC33B.10.000027
ORF821S21RagTagA23B.1.10.000036
ORF821S21RagTagG13B.1.10.000018
ORF821S21IaGtaTt33B.1.1770.00004
ORF821S21IaGtaTt33B.1.4290.000071
ORF821S21delAGT---33B.1.5090.002597
ORF821S21SagTagC33B.1.617.20.000011
ORF821S21del1AgT-gA33B.1.6230.001609
ORF821S21SagTagC33P.10.000047
ORF821S21delAGT---220.111111
ORF821S21del2AGt--t220.111111
ORF821S21NaGtaAt220.111111
ORF821S21delAGT---22A.2.20.003378
ORF821S21DAGTGAC12All0
ORF821S21DAGtGAt12All0
ORF821S21GAgtGgt22AY.1000.000092
ORF821S21IaGtaTt22AY.1070.000932
ORF821S21del1agTag-22AY.1140.000462
ORF821S21delAGT---22AY.1140.000462
ORF821S21delAGT---22AY.1180.000125
ORF821S21GAgtGgt22AY.250.000012
ORF821S21delAGT---22AY.250.000012
ORF821S21SagTagC22AY.250.000012
ORF821S21delAGT---22AY.260.000057
ORF821S21NaGtaAt22AY.30.00002
ORF821S21delAGT---22AY.370.000632
ORF821S21SagTagC22AY.40.000003
ORF821S21NaGtaAt22AY.46.40.000329
ORF821S21SagTagC22AY.470.000062
ORF821S21delAGT---22AY.470.000062
ORF821S21GAgtGgt22AY.60.000082
ORF821S21delAGT---22AY.670.000929
ORF821S21GAgtGgt22AY.750.000112
ORF821S21IaGtaTt22AY.90.000135
ORF821S21IaGtaTt22B.10.000018
ORF821S21NaGtaAt22B.1.10.000036
ORF821S21delAGT---22B.1.1.2140.000111
ORF821S21delAGT---22B.1.1.3060.000877
ORF821S21delAGT---22B.1.1.3180.000604
ORF821S21SagTagC22B.1.1.70.000002
ORF821S21delAGT---22B.1.1.700.000682
ORF821S21delAGT---22B.1.1260.002551
ORF821S21GAgtGgt22B.1.1770.000026
ORF821S21IaGtaTt22B.1.2430.000139
ORF821S21delAGT---22B.1.2580.000133
ORF821S21delAGT---22B.1.3510.000059
ORF821S21delAGT---22B.1.360.000292
ORF821S21delAGT---22B.1.36.170.000988
ORF821S21RagTagG22B.1.3690.00057
ORF821S21delAGT---22B.1.4270.000101
ORF821S21delAGT---22B.1.6210.000177
ORF821S21delAGT---22B.400.000729
ORF821S21IaGtaTt22C.370.000232
ORF821S21IaGtaTt22D.20.00015
ORF821S21delAGT---22P.1.150.000465
ORF821S21delAGT---22R.10.00018
ORF821S21SagTagC110.055556
ORF821S21SagTagC11A0.000387
ORF821S21delAGT---11A.2.50.000499
ORF821S21SagTagC11A.23.10.000704
ORF821S21delAGT---11A.23.10.000704
ORF821S21delAGT---11AD.20.000219
ORF821S21del2AGt--t11AD.20.000219
ORF821S21delAGT---11AE.40.043478
ORF821S21FAGtTTt11All0
ORF821S21VAGtGTt11All0
ORF821S21IaGtaTt11AY.1000.000046
ORF821S21SagTagC11AY.1020.000027
ORF821S21delAGT---11AY.1030.000006
ORF821S21NaGtaAt11AY.1030.000006
ORF821S21VAGtGTt11AY.1030.000006
ORF821S21IaGtaTt11AY.1050.000643
ORF821S21NaGtaAt11AY.1060.000335
ORF821S21delAGT---11AY.1080.001103
ORF821S21IaGtaTt11AY.1100.000113
ORF821S21NaGtaAt11AY.1160.000287
ORF821S21IaGtaTt11AY.1170.000085
ORF821S21NaGtaAt11AY.20.000356
ORF821S21SagTagC11AY.200.000039
ORF821S21SagTagC11AY.230.00007
ORF821S21del1agTag-11AY.250.000006
ORF821S21del2AGt--t11AY.250.000006
ORF821S21IaGtaTt11AY.270.000065
ORF821S21IaGtaTt11AY.29.10.000221
ORF821S21SagTagC11AY.30.00001
ORF821S21CAgtTgt11AY.30.00001
ORF821S21CAgtTgt11AY.3.10.000085
ORF821S21GAgtGgt11AY.340.000097
ORF821S21NaGtaAt11AY.360.000148
ORF821S21TaGtaCt11AY.40.000002
ORF821S21RAgtCgt11AY.40.000002
ORF821S21IaGtaTt11AY.4.20.000022
ORF821S21NaGtaAt11AY.4.20.000022
ORF821S21IaGtaTt11AY.4.2.10.000149
ORF821S21IaGtaTt11AY.4.40.000409
ORF821S21NaGtaAt11AY.420.00004
ORF821S21GAgtGgt11AY.430.000004
ORF821S21RagTagG11AY.430.000004
ORF821S21NaGtaAt11AY.450.000122
ORF821S21IaGtaTt11AY.46.10.001027
ORF821S21delAGT---11AY.46.40.000165
ORF821S21NaGtaAt11AY.540.000095
ORF821S21GAgtGgt11AY.540.000095
ORF821S21delAGT---11AY.550.000917
ORF821S21IaGtaTt11AY.550.000917
ORF821S21delAGT---11AY.750.000056
ORF821S21delAGT---11AY.840.000437
ORF821S21GAgtGgt11AY.850.000427
ORF821S21delAGT---11AY.90.000068
ORF821S21SagTagC11AY.98.10.000048
ORF821S21IaGtaTt11AY.98.10.000048
ORF821S21DAGtGAt11AY.990.001049
ORF821S21delAGT---11AY.99.10.001553
ORF821S21GAgtGgt11AY.99.20.000092
ORF821S21SagTagC11AY.99.20.000092
ORF821S21IaGtaTt11AY.99.20.000092
ORF821S21TaGtaCt11AZ.50.003509
ORF821S21del1agTag-11B.10.000009
ORF821S21RagTagA11B.10.000009
ORF821S21CAgtTgt11B.10.000009
ORF821S21CAgtTgt11B.1.10.000018
ORF821S21FAGtTTt11B.1.10.000018
ORF821S21SagTagC11B.1.10.000018
ORF821S21delAGT---11B.1.1.1740.003378
ORF821S21delAGT---11B.1.1.2160.00089
ORF821S21GAgtGgt11B.1.1.2310.003096
ORF821S21delAGT---11B.1.1.250.000569
ORF821S21SagTagC11B.1.1.2630.001558
ORF821S21RagTagA11B.1.1.2820.011628
ORF821S21delAGT---11B.1.1.2840.000107
ORF821S21IaGtaTt11B.1.1.2940.001266
ORF821S21RAgtCgt11B.1.1.3060.000438
ORF821S21CAgtTgt11B.1.1.3080.011765
ORF821S21IaGtaTt11B.1.1.3170.000412
ORF821S21NaGtaAt11B.1.1.3180.000302
ORF821S21delAGT---11B.1.1.3540.004386
ORF821S21CAgtTgt11B.1.1.3960.045455
ORF821S21delAGT---11B.1.1.500.000679
ORF821S21IaGtaTt11B.1.1.630.000386
ORF821S21del2AGt--t11B.1.1.70.000001
ORF821S21CAgtTgt11B.1.1.70.000001
ORF821S21RagTagA11B.1.1770.000013
ORF821S21IaGtaTt11B.1.177.210.000076
ORF821S21DAGTGAC11B.1.177.630.002703
ORF821S21delAGT---11B.1.177.70.000165
ORF821S21delAGT---11B.1.177.830.001481
ORF821S21delAGT---11B.1.1950.005025
ORF821S21GAgtGgt11B.1.20.000009
ORF821S21del1agTag-11B.1.20.000009
ORF821S21delAGT---11B.1.2100.002132
ORF821S21IaGtaTt11B.1.2210.000071
ORF821S21SagTagC11B.1.243.10.022222
ORF821S21CAgtTgt11B.1.2580.000067
ORF821S21delAGT---11B.1.258.120.007874
ORF821S21delAGT---11B.1.258.170.000104
ORF821S21SagTagC11B.1.3110.000275
ORF821S21IaGtaTt11B.1.3510.00003
ORF821S21delAGT---11B.1.351.20.000303
ORF821S21delAGT---11B.1.36.290.000517
ORF821S21GAgtGgt11B.1.3960.000706
ORF821S21GAgtGgt11B.1.4130.004255
ORF821S21IaGtaTt11B.1.4270.00005
ORF821S21del2AGt--t11B.1.4290.000024
ORF821S21NaGtaAt11B.1.4390.005917
ORF821S21delAGT---11B.1.4680.005714
ORF821S21delAGT---11B.1.5060.02381
ORF821S21RagTagG11B.1.5150.014493
ORF821S21IaGtaTt11B.1.5260.000024
ORF821S21NaGtaAt11B.1.5640.000426
ORF821S21SagTagC11B.1.5820.000491
ORF821S21NaGtaAt11B.1.5960.000087
ORF821S21NaGtaAt11B.1.6060.006024
ORF821S21delAGT---11B.1.6090.000479
ORF821S21IaGtaTt11B.1.6110.04
ORF821S21TaGtaCt11B.1.617.20.000004
ORF821S21RAgTCgA11B.1.617.20.000004
ORF821S21NaGtaAt11B.1.6230.000536
ORF821S21delAGT---11B.1.6300.005236
ORF821S21IaGtaTt11B.1.6370.000073
ORF821S21GAgtGgt11B.400.000364
ORF821S21delAGT---11C.260.007353
ORF821S21GAgtGgt11C.370.000116
ORF821S21NaGtaAt11D.20.000075
ORF821S21delAGT---11N.30.005814
ORF821S21delAGT---11N.60.007092
ORF821S21NaGtaAt11P.10.000016
ORF821S21delAGT---11P.1.120.000484
ORF821S21NaGtaAt11P.1.150.000232
ORF821S21IaGtaTt11P.1.150.000232
ORF821S21NaGtaAt11P.1.170.000162
ORF821S21delAGT---11P.1.170.000162
ORF821S21SagTagC11P.1.170.000162
ORF821S21IaGtaTt11P.1.170.000162
ORF821S21RAgtCgt11P.1.70.000319
ORF821S21delAGT---11Q.20.000613