CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 21 | S21del | del | AGT | --- | 1817 | 1817 | 1 | 27954-27956 | |
ORF8 | 21 | S21I | nonsyn | aGt | aTt | 1370 | 1369 | 0.99927 | 27954-27956 | |
ORF8 | 21 | S21I | nonsyn | aGT | aTC | 1370 | 1 | 0.000729927 | 27954-27956 | |
ORF8 | 21 | S21N | nonsyn | aGt | aAt | 1294 | 1294 | 1 | 27954-27956 | |
ORF8 | 21 | S21S | syn | agT | agC | 133 | 133 | 1 | 27954-27956 | |
ORF8 | 21 | S21G | nonsyn | Agt | Ggt | 106 | 106 | 1 | 27954-27956 | |
ORF8 | 21 | S21del2 | del | AGt | --t | 75 | 56 | 0.746667 | 27954-27956 | |
ORF8 | 21 | S21del2 | del | AGT | --N | 75 | 19 | 0.253333 | 27954-27956 | |
ORF8 | 21 | S21R | nonsyn | agT | agG | 52 | 28 | 0.538462 | 27954-27956 | |
ORF8 | 21 | S21R | nonsyn | agT | agA | 52 | 20 | 0.384615 | 27954-27956 | |
ORF8 | 21 | S21R | nonsyn | Agt | Cgt | 52 | 3 | 0.0576923 | 27954-27956 | |
ORF8 | 21 | S21R | nonsyn | AgT | CgA | 52 | 1 | 0.0192308 | 27954-27956 | |
ORF8 | 21 | S21C | nonsyn | Agt | Tgt | 8 | 8 | 1 | 27954-27956 | |
ORF8 | 21 | S21del1 | del | agT | ag- | 8 | 5 | 0.625 | 27954-27956 | |
ORF8 | 21 | S21del1 | del | AgT | -gA | 8 | 3 | 0.375 | 27954-27956 | |
ORF8 | 21 | S21T | nonsyn | aGt | aCt | 6 | 6 | 1 | 27954-27956 | |
ORF8 | 21 | S21D | nonsyn | AGT | GAC | 2 | 1 | 0.5 | 27954-27956 | |
ORF8 | 21 | S21D | nonsyn | AGt | GAt | 2 | 1 | 0.5 | 27954-27956 | |
ORF8 | 21 | S21V | nonsyn | AGt | GTt | 1 | 1 | 1 | 27954-27956 | |
ORF8 | 21 | S21F | nonsyn | AGt | TTt | 1 | 1 | 1 | 27954-27956 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 21 | S21del | AGT | --- | 1817 | 1817 | All | 0.000348 |
ORF8 | 21 | S21I | aGt | aTt | 1369 | 1370 | All | 0.000262 |
ORF8 | 21 | S21I | aGT | aTC | 1 | 1370 | All | 0 |
ORF8 | 21 | S21N | aGt | aAt | 1294 | 1294 | All | 0.000247 |
ORF8 | 21 | S21del | AGT | --- | 1234 | 1234 | B.1.623 | 0.662017 |
ORF8 | 21 | S21I | aGt | aTt | 983 | 983 | AY.3 | 0.009777 |
ORF8 | 21 | S21N | aGt | aAt | 364 | 364 | B.1.139 | 0.266862 |
ORF8 | 21 | S21N | aGt | aAt | 270 | 270 | B.1.369 | 0.077011 |
ORF8 | 21 | S21N | aGt | aAt | 250 | 250 | B.1.1.7 | 0.000224 |
ORF8 | 21 | S21S | agT | agC | 133 | 133 | All | 0.000025 |
ORF8 | 21 | S21G | Agt | Ggt | 106 | 106 | All | 0.00002 |
ORF8 | 21 | S21del | AGT | --- | 96 | 96 | B.1.1.7 | 0.000086 |
ORF8 | 21 | S21S | agT | agC | 82 | 82 | B.1.637 | 0.005992 |
ORF8 | 21 | S21N | aGt | aAt | 79 | 79 | AY.25 | 0.000475 |
ORF8 | 21 | S21del2 | AGt | --t | 56 | 75 | All | 0.000011 |
ORF8 | 21 | S21del2 | AGT | --N | 19 | 75 | All | 0.000004 |
ORF8 | 21 | S21del2 | AGt | --t | 50 | 69 | B.1.623 | 0.026824 |
ORF8 | 21 | S21del2 | AGT | --N | 19 | 69 | B.1.623 | 0.010193 |
ORF8 | 21 | S21del | AGT | --- | 68 | 68 | AY.4 | 0.000106 |
ORF8 | 21 | S21N | aGt | aAt | 63 | 63 | B.1.444 | 1 |
ORF8 | 21 | S21I | aGt | aTt | 53 | 53 | AY.103 | 0.000329 |
ORF8 | 21 | S21R | agT | agG | 28 | 52 | All | 0.000005 |
ORF8 | 21 | S21R | agT | agA | 20 | 52 | All | 0.000004 |
ORF8 | 21 | S21R | Agt | Cgt | 3 | 52 | All | 0.000001 |
ORF8 | 21 | S21R | AgT | CgA | 1 | 52 | All | 0 |
ORF8 | 21 | S21I | aGt | aTt | 47 | 47 | AY.43 | 0.000208 |
ORF8 | 21 | S21del | AGT | --- | 47 | 47 | B.1.243 | 0.00327 |
ORF8 | 21 | S21I | aGt | aTt | 44 | 44 | B.1.1.7 | 0.000039 |
ORF8 | 21 | S21del | AGT | --- | 39 | 39 | AY.29 | 0.000615 |
ORF8 | 21 | S21G | Agt | Ggt | 39 | 39 | B.1.1.7 | 0.000035 |
ORF8 | 21 | S21I | aGt | aTt | 39 | 39 | B.1.617.2 | 0.000147 |
ORF8 | 21 | S21N | aGt | aAt | 36 | 36 | B.1.617.2 | 0.000136 |
ORF8 | 21 | S21N | aGt | aAt | 35 | 35 | AY.20 | 0.00136 |
ORF8 | 21 | S21I | aGt | aTt | 35 | 35 | AY.4 | 0.000054 |
ORF8 | 21 | S21del | AGT | --- | 33 | 33 | B.1.1.222 | 0.006732 |
ORF8 | 21 | S21N | aGt | aAt | 29 | 29 | AY.44 | 0.000177 |
ORF8 | 21 | S21N | aGt | aAt | 28 | 28 | B.1.1.189 | 0.04236 |
ORF8 | 21 | S21N | aGt | aAt | 25 | 25 | B.1 | 0.000229 |
ORF8 | 21 | S21del | AGT | --- | 25 | 25 | B.1 | 0.000229 |
ORF8 | 21 | S21del | AGT | --- | 23 | 23 | B.1.1 | 0.000417 |
ORF8 | 21 | S21I | aGt | aTt | 19 | 19 | B.1.1.519 | 0.000755 |
ORF8 | 21 | S21R | agT | agG | 18 | 18 | AY.103 | 0.000112 |
ORF8 | 21 | S21del | AGT | --- | 18 | 18 | B | 0.002301 |
ORF8 | 21 | S21N | aGt | aAt | 15 | 15 | AY.102 | 0.000398 |
ORF8 | 21 | S21N | aGt | aAt | 14 | 14 | AY.4 | 0.000022 |
ORF8 | 21 | S21del | AGT | --- | 14 | 14 | AY.48 | 0.006512 |
ORF8 | 21 | S21I | aGt | aTt | 14 | 14 | P.1.14 | 0.000669 |
ORF8 | 21 | S21R | agT | agA | 13 | 13 | B.1.623 | 0.006974 |
ORF8 | 21 | S21I | aGt | aTt | 12 | 12 | B.1.1.433 | 0.017094 |
ORF8 | 21 | S21G | Agt | Ggt | 11 | 11 | B.1.617.2 | 0.000041 |
ORF8 | 21 | S21I | aGt | aTt | 10 | 10 | AY.44 | 0.000061 |
ORF8 | 21 | S21I | aGt | aTt | 9 | 9 | AY.102 | 0.000239 |
ORF8 | 21 | S21I | aGt | aTt | 9 | 9 | AY.104 | 0.017857 |
ORF8 | 21 | S21del | AGT | --- | 9 | 9 | B.1.160 | 0.000281 |
ORF8 | 21 | S21del | AGT | --- | 9 | 9 | B.1.177 | 0.000119 |
ORF8 | 21 | S21C | Agt | Tgt | 8 | 8 | All | 0.000002 |
ORF8 | 21 | S21del1 | agT | ag- | 5 | 8 | All | 0.000001 |
ORF8 | 21 | S21del1 | AgT | -gA | 3 | 8 | All | 0.000001 |
ORF8 | 21 | S21N | aGt | aAt | 8 | 8 | AY.76 | 0.038647 |
ORF8 | 21 | S21del | AGT | --- | 8 | 8 | B.1.2 | 0.00007 |
ORF8 | 21 | S21N | aGt | aAt | 7 | 7 | AY.118 | 0.000439 |
ORF8 | 21 | S21N | aGt | aAt | 7 | 7 | AY.39 | 0.000173 |
ORF8 | 21 | S21del | AGT | --- | 7 | 7 | AY.44 | 0.000043 |
ORF8 | 21 | S21del | AGT | --- | 7 | 7 | AZ.5 | 0.024561 |
ORF8 | 21 | S21del | AGT | --- | 7 | 7 | B.1.1.265 | 0.022082 |
ORF8 | 21 | S21N | aGt | aAt | 7 | 7 | B.1.2 | 0.000062 |
ORF8 | 21 | S21del | AGT | --- | 7 | 7 | B.1.36.16 | 0.009972 |
ORF8 | 21 | S21del | AGT | --- | 7 | 7 | P.1 | 0.00011 |
ORF8 | 21 | S21del | AGT | --- | 7 | 7 | P.1.14 | 0.000335 |
ORF8 | 21 | S21T | aGt | aCt | 6 | 6 | All | 0.000001 |
ORF8 | 21 | S21I | aGt | aTt | 6 | 6 | AY.29 | 0.000095 |
ORF8 | 21 | S21del | AGT | --- | 6 | 6 | AY.29.1 | 0.001323 |
ORF8 | 21 | S21del | AGT | --- | 6 | 6 | AY.3 | 0.00006 |
ORF8 | 21 | S21del | AGT | --- | 6 | 6 | AY.3.1 | 0.000512 |
ORF8 | 21 | S21I | aGt | aTt | 6 | 6 | AY.39 | 0.000148 |
ORF8 | 21 | S21G | Agt | Ggt | 6 | 6 | AY.4 | 0.000009 |
ORF8 | 21 | S21del | AGT | --- | 6 | 6 | B.1.243.2 | 0.086957 |
ORF8 | 21 | S21G | Agt | Ggt | 6 | 6 | B.1.429 | 0.000141 |
ORF8 | 21 | S21del | AGT | --- | 6 | 6 | B.1.526 | 0.000141 |
ORF8 | 21 | S21del | AGT | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF8 | 21 | S21S | agT | agC | 5 | 5 | AY.103 | 0.000031 |
ORF8 | 21 | S21I | aGt | aTt | 5 | 5 | AY.23 | 0.000349 |
ORF8 | 21 | S21I | aGt | aTt | 5 | 5 | AY.25 | 0.00003 |
ORF8 | 21 | S21del | AGT | --- | 5 | 5 | AY.43 | 0.000022 |
ORF8 | 21 | S21G | Agt | Ggt | 5 | 5 | B.1 | 0.000046 |
ORF8 | 21 | S21S | agT | agC | 5 | 5 | B.1.396 | 0.003529 |
ORF8 | 21 | S21S | agT | agC | 5 | 5 | P.1.15 | 0.001162 |
ORF8 | 21 | S21I | aGt | aTt | 3 | 4 | 0.166667 | |
ORF8 | 21 | S21I | aGT | aTC | 1 | 4 | 0.055556 | |
ORF8 | 21 | S21N | aGt | aAt | 4 | 4 | AY.1 | 0.001583 |
ORF8 | 21 | S21G | Agt | Ggt | 4 | 4 | AY.103 | 0.000025 |
ORF8 | 21 | S21S | agT | agC | 4 | 4 | AY.118 | 0.000251 |
ORF8 | 21 | S21I | aGt | aTt | 4 | 4 | AY.119 | 0.000141 |
ORF8 | 21 | S21G | Agt | Ggt | 4 | 4 | AY.20 | 0.000155 |
ORF8 | 21 | S21N | aGt | aAt | 4 | 4 | AY.23 | 0.000279 |
ORF8 | 21 | S21G | Agt | Ggt | 4 | 4 | AY.29 | 0.000063 |
ORF8 | 21 | S21N | aGt | aAt | 4 | 4 | AY.33 | 0.000267 |
ORF8 | 21 | S21del | AGT | --- | 4 | 4 | AY.34 | 0.000388 |
ORF8 | 21 | S21I | aGt | aTt | 4 | 4 | AY.36 | 0.000593 |
ORF8 | 21 | S21I | aGt | aTt | 4 | 4 | AY.73 | 0.002661 |
ORF8 | 21 | S21I | aGt | aTt | 4 | 4 | B.1.1 | 0.000073 |
ORF8 | 21 | S21I | aGt | aTt | 4 | 4 | B.1.1.216 | 0.003562 |
ORF8 | 21 | S21del | AGT | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF8 | 21 | S21R | agT | agA | 2 | 4 | B.1.1.7 | 0.000002 |
ORF8 | 21 | S21R | agT | agG | 2 | 4 | B.1.1.7 | 0.000002 |
ORF8 | 21 | S21N | aGt | aAt | 4 | 4 | B.1.119 | 0.042105 |
ORF8 | 21 | S21N | aGt | aAt | 4 | 4 | B.1.351 | 0.000119 |
ORF8 | 21 | S21del | AGT | --- | 4 | 4 | B.1.367 | 0.00317 |
ORF8 | 21 | S21del | AGT | --- | 4 | 4 | B.1.429 | 0.000094 |
ORF8 | 21 | S21I | aGt | aTt | 4 | 4 | B.1.596 | 0.000349 |
ORF8 | 21 | S21N | aGt | aAt | 4 | 4 | C.37 | 0.000464 |
ORF8 | 21 | S21del | AGT | --- | 4 | 4 | P.1.1 | 0.001271 |
ORF8 | 21 | S21T | aGt | aCt | 3 | 3 | AY.20 | 0.000117 |
ORF8 | 21 | S21R | agT | agG | 3 | 3 | AY.25 | 0.000018 |
ORF8 | 21 | S21del | AGT | --- | 3 | 3 | AY.4.2 | 0.000065 |
ORF8 | 21 | S21N | aGt | aAt | 3 | 3 | AY.43 | 0.000013 |
ORF8 | 21 | S21G | Agt | Ggt | 3 | 3 | AY.44 | 0.000018 |
ORF8 | 21 | S21N | aGt | aAt | 3 | 3 | AY.5 | 0.000062 |
ORF8 | 21 | S21I | aGt | aTt | 3 | 3 | AY.5 | 0.000062 |
ORF8 | 21 | S21del | AGT | --- | 3 | 3 | AY.98.1 | 0.000145 |
ORF8 | 21 | S21G | Agt | Ggt | 3 | 3 | AY.99 | 0.003148 |
ORF8 | 21 | S21S | agT | agC | 3 | 3 | B.1 | 0.000027 |
ORF8 | 21 | S21R | agT | agA | 2 | 3 | B.1.1 | 0.000036 |
ORF8 | 21 | S21R | agT | agG | 1 | 3 | B.1.1 | 0.000018 |
ORF8 | 21 | S21I | aGt | aTt | 3 | 3 | B.1.177 | 0.00004 |
ORF8 | 21 | S21I | aGt | aTt | 3 | 3 | B.1.429 | 0.000071 |
ORF8 | 21 | S21del | AGT | --- | 3 | 3 | B.1.509 | 0.002597 |
ORF8 | 21 | S21S | agT | agC | 3 | 3 | B.1.617.2 | 0.000011 |
ORF8 | 21 | S21del1 | AgT | -gA | 3 | 3 | B.1.623 | 0.001609 |
ORF8 | 21 | S21S | agT | agC | 3 | 3 | P.1 | 0.000047 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | 0.111111 | |
ORF8 | 21 | S21del2 | AGt | --t | 2 | 2 | 0.111111 | |
ORF8 | 21 | S21N | aGt | aAt | 2 | 2 | 0.111111 | |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | A.2.2 | 0.003378 |
ORF8 | 21 | S21D | AGT | GAC | 1 | 2 | All | 0 |
ORF8 | 21 | S21D | AGt | GAt | 1 | 2 | All | 0 |
ORF8 | 21 | S21G | Agt | Ggt | 2 | 2 | AY.100 | 0.000092 |
ORF8 | 21 | S21I | aGt | aTt | 2 | 2 | AY.107 | 0.000932 |
ORF8 | 21 | S21del1 | agT | ag- | 2 | 2 | AY.114 | 0.000462 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | AY.114 | 0.000462 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | AY.118 | 0.000125 |
ORF8 | 21 | S21G | Agt | Ggt | 2 | 2 | AY.25 | 0.000012 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | AY.25 | 0.000012 |
ORF8 | 21 | S21S | agT | agC | 2 | 2 | AY.25 | 0.000012 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | AY.26 | 0.000057 |
ORF8 | 21 | S21N | aGt | aAt | 2 | 2 | AY.3 | 0.00002 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | AY.37 | 0.000632 |
ORF8 | 21 | S21S | agT | agC | 2 | 2 | AY.4 | 0.000003 |
ORF8 | 21 | S21N | aGt | aAt | 2 | 2 | AY.46.4 | 0.000329 |
ORF8 | 21 | S21S | agT | agC | 2 | 2 | AY.47 | 0.000062 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | AY.47 | 0.000062 |
ORF8 | 21 | S21G | Agt | Ggt | 2 | 2 | AY.6 | 0.000082 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | AY.67 | 0.000929 |
ORF8 | 21 | S21G | Agt | Ggt | 2 | 2 | AY.75 | 0.000112 |
ORF8 | 21 | S21I | aGt | aTt | 2 | 2 | AY.9 | 0.000135 |
ORF8 | 21 | S21I | aGt | aTt | 2 | 2 | B.1 | 0.000018 |
ORF8 | 21 | S21N | aGt | aAt | 2 | 2 | B.1.1 | 0.000036 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | B.1.1.214 | 0.000111 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | B.1.1.306 | 0.000877 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | B.1.1.318 | 0.000604 |
ORF8 | 21 | S21S | agT | agC | 2 | 2 | B.1.1.7 | 0.000002 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | B.1.1.70 | 0.000682 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | B.1.126 | 0.002551 |
ORF8 | 21 | S21G | Agt | Ggt | 2 | 2 | B.1.177 | 0.000026 |
ORF8 | 21 | S21I | aGt | aTt | 2 | 2 | B.1.243 | 0.000139 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF8 | 21 | S21R | agT | agG | 2 | 2 | B.1.369 | 0.00057 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | B.40 | 0.000729 |
ORF8 | 21 | S21I | aGt | aTt | 2 | 2 | C.37 | 0.000232 |
ORF8 | 21 | S21I | aGt | aTt | 2 | 2 | D.2 | 0.00015 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF8 | 21 | S21del | AGT | --- | 2 | 2 | R.1 | 0.00018 |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | 0.055556 | |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | A | 0.000387 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | A.2.5 | 0.000499 |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | A.23.1 | 0.000704 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | AD.2 | 0.000219 |
ORF8 | 21 | S21del2 | AGt | --t | 1 | 1 | AD.2 | 0.000219 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | AE.4 | 0.043478 |
ORF8 | 21 | S21F | AGt | TTt | 1 | 1 | All | 0 |
ORF8 | 21 | S21V | AGt | GTt | 1 | 1 | All | 0 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | AY.100 | 0.000046 |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | AY.102 | 0.000027 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | AY.103 | 0.000006 |
ORF8 | 21 | S21V | AGt | GTt | 1 | 1 | AY.103 | 0.000006 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | AY.105 | 0.000643 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | AY.106 | 0.000335 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | AY.110 | 0.000113 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | AY.116 | 0.000287 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | AY.117 | 0.000085 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | AY.2 | 0.000356 |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | AY.20 | 0.000039 |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | AY.23 | 0.00007 |
ORF8 | 21 | S21del1 | agT | ag- | 1 | 1 | AY.25 | 0.000006 |
ORF8 | 21 | S21del2 | AGt | --t | 1 | 1 | AY.25 | 0.000006 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | AY.27 | 0.000065 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 21 | S21C | Agt | Tgt | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 21 | S21C | Agt | Tgt | 1 | 1 | AY.3.1 | 0.000085 |
ORF8 | 21 | S21G | Agt | Ggt | 1 | 1 | AY.34 | 0.000097 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | AY.36 | 0.000148 |
ORF8 | 21 | S21T | aGt | aCt | 1 | 1 | AY.4 | 0.000002 |
ORF8 | 21 | S21R | Agt | Cgt | 1 | 1 | AY.4 | 0.000002 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | AY.4.2 | 0.000022 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | AY.4.2 | 0.000022 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | AY.4.4 | 0.000409 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | AY.42 | 0.00004 |
ORF8 | 21 | S21G | Agt | Ggt | 1 | 1 | AY.43 | 0.000004 |
ORF8 | 21 | S21R | agT | agG | 1 | 1 | AY.43 | 0.000004 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | AY.45 | 0.000122 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | AY.46.4 | 0.000165 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | AY.54 | 0.000095 |
ORF8 | 21 | S21G | Agt | Ggt | 1 | 1 | AY.54 | 0.000095 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | AY.55 | 0.000917 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | AY.55 | 0.000917 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | AY.84 | 0.000437 |
ORF8 | 21 | S21G | Agt | Ggt | 1 | 1 | AY.85 | 0.000427 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | AY.98.1 | 0.000048 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF8 | 21 | S21D | AGt | GAt | 1 | 1 | AY.99 | 0.001049 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF8 | 21 | S21G | Agt | Ggt | 1 | 1 | AY.99.2 | 0.000092 |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | AY.99.2 | 0.000092 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | AY.99.2 | 0.000092 |
ORF8 | 21 | S21T | aGt | aCt | 1 | 1 | AZ.5 | 0.003509 |
ORF8 | 21 | S21del1 | agT | ag- | 1 | 1 | B.1 | 0.000009 |
ORF8 | 21 | S21R | agT | agA | 1 | 1 | B.1 | 0.000009 |
ORF8 | 21 | S21C | Agt | Tgt | 1 | 1 | B.1 | 0.000009 |
ORF8 | 21 | S21C | Agt | Tgt | 1 | 1 | B.1.1 | 0.000018 |
ORF8 | 21 | S21F | AGt | TTt | 1 | 1 | B.1.1 | 0.000018 |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | B.1.1 | 0.000018 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF8 | 21 | S21G | Agt | Ggt | 1 | 1 | B.1.1.231 | 0.003096 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | B.1.1.263 | 0.001558 |
ORF8 | 21 | S21R | agT | agA | 1 | 1 | B.1.1.282 | 0.011628 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | B.1.1.294 | 0.001266 |
ORF8 | 21 | S21R | Agt | Cgt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF8 | 21 | S21C | Agt | Tgt | 1 | 1 | B.1.1.308 | 0.011765 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.1.354 | 0.004386 |
ORF8 | 21 | S21C | Agt | Tgt | 1 | 1 | B.1.1.396 | 0.045455 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF8 | 21 | S21del2 | AGt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF8 | 21 | S21C | Agt | Tgt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF8 | 21 | S21R | agT | agA | 1 | 1 | B.1.177 | 0.000013 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF8 | 21 | S21D | AGT | GAC | 1 | 1 | B.1.177.63 | 0.002703 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.195 | 0.005025 |
ORF8 | 21 | S21G | Agt | Ggt | 1 | 1 | B.1.2 | 0.000009 |
ORF8 | 21 | S21del1 | agT | ag- | 1 | 1 | B.1.2 | 0.000009 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | B.1.221 | 0.000071 |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | B.1.243.1 | 0.022222 |
ORF8 | 21 | S21C | Agt | Tgt | 1 | 1 | B.1.258 | 0.000067 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.258.12 | 0.007874 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | B.1.311 | 0.000275 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF8 | 21 | S21G | Agt | Ggt | 1 | 1 | B.1.396 | 0.000706 |
ORF8 | 21 | S21G | Agt | Ggt | 1 | 1 | B.1.413 | 0.004255 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | B.1.427 | 0.00005 |
ORF8 | 21 | S21del2 | AGt | --t | 1 | 1 | B.1.429 | 0.000024 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | B.1.439 | 0.005917 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.506 | 0.02381 |
ORF8 | 21 | S21R | agT | agG | 1 | 1 | B.1.515 | 0.014493 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | B.1.526 | 0.000024 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | B.1.564 | 0.000426 |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | B.1.582 | 0.000491 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | B.1.606 | 0.006024 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.609 | 0.000479 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | B.1.611 | 0.04 |
ORF8 | 21 | S21T | aGt | aCt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF8 | 21 | S21R | AgT | CgA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | B.1.623 | 0.000536 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | B.1.637 | 0.000073 |
ORF8 | 21 | S21G | Agt | Ggt | 1 | 1 | B.40 | 0.000364 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | C.26 | 0.007353 |
ORF8 | 21 | S21G | Agt | Ggt | 1 | 1 | C.37 | 0.000116 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | D.2 | 0.000075 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | N.3 | 0.005814 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | N.6 | 0.007092 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | P.1 | 0.000016 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | P.1.15 | 0.000232 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | P.1.15 | 0.000232 |
ORF8 | 21 | S21N | aGt | aAt | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 21 | S21S | agT | agC | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 21 | S21I | aGt | aTt | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 21 | S21R | Agt | Cgt | 1 | 1 | P.1.7 | 0.000319 |
ORF8 | 21 | S21del | AGT | --- | 1 | 1 | Q.2 | 0.000613 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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