CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 21

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF8	21	S21del		del	AGT	---	1817	1817	1	27954-27956
ORF8	21	S21I		nonsyn	aGt	aTt	1370	1369	0.99927	27954-27956
ORF8	21	S21I		nonsyn	aGT	aTC	1370	1	0.000729927	27954-27956
ORF8	21	S21N		nonsyn	aGt	aAt	1294	1294	1	27954-27956
ORF8	21	S21S		syn	agT	agC	133	133	1	27954-27956
ORF8	21	S21G		nonsyn	Agt	Ggt	106	106	1	27954-27956
ORF8	21	S21del2		del	AGt	--t	75	56	0.746667	27954-27956
ORF8	21	S21del2		del	AGT	--N	75	19	0.253333	27954-27956
ORF8	21	S21R		nonsyn	agT	agG	52	28	0.538462	27954-27956
ORF8	21	S21R		nonsyn	agT	agA	52	20	0.384615	27954-27956
ORF8	21	S21R		nonsyn	Agt	Cgt	52	3	0.0576923	27954-27956
ORF8	21	S21R		nonsyn	AgT	CgA	52	1	0.0192308	27954-27956
ORF8	21	S21C		nonsyn	Agt	Tgt	8	8	1	27954-27956
ORF8	21	S21del1		del	agT	ag-	8	5	0.625	27954-27956
ORF8	21	S21del1		del	AgT	-gA	8	3	0.375	27954-27956
ORF8	21	S21T		nonsyn	aGt	aCt	6	6	1	27954-27956
ORF8	21	S21D		nonsyn	AGT	GAC	2	1	0.5	27954-27956
ORF8	21	S21D		nonsyn	AGt	GAt	2	1	0.5	27954-27956
ORF8	21	S21V		nonsyn	AGt	GTt	1	1	1	27954-27956
ORF8	21	S21F		nonsyn	AGt	TTt	1	1	1	27954-27956

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF8	21	S21del	AGT	---	1817	1817	All	0.000348
ORF8	21	S21I	aGt	aTt	1369	1370	All	0.000262
ORF8	21	S21I	aGT	aTC	1	1370	All	0
ORF8	21	S21N	aGt	aAt	1294	1294	All	0.000247
ORF8	21	S21del	AGT	---	1234	1234	B.1.623	0.662017
ORF8	21	S21I	aGt	aTt	983	983	AY.3	0.009777
ORF8	21	S21N	aGt	aAt	364	364	B.1.139	0.266862
ORF8	21	S21N	aGt	aAt	270	270	B.1.369	0.077011
ORF8	21	S21N	aGt	aAt	250	250	B.1.1.7	0.000224
ORF8	21	S21S	agT	agC	133	133	All	0.000025
ORF8	21	S21G	Agt	Ggt	106	106	All	0.00002
ORF8	21	S21del	AGT	---	96	96	B.1.1.7	0.000086
ORF8	21	S21S	agT	agC	82	82	B.1.637	0.005992
ORF8	21	S21N	aGt	aAt	79	79	AY.25	0.000475
ORF8	21	S21del2	AGt	--t	56	75	All	0.000011
ORF8	21	S21del2	AGT	--N	19	75	All	0.000004
ORF8	21	S21del2	AGt	--t	50	69	B.1.623	0.026824
ORF8	21	S21del2	AGT	--N	19	69	B.1.623	0.010193
ORF8	21	S21del	AGT	---	68	68	AY.4	0.000106
ORF8	21	S21N	aGt	aAt	63	63	B.1.444	1
ORF8	21	S21I	aGt	aTt	53	53	AY.103	0.000329
ORF8	21	S21R	agT	agG	28	52	All	0.000005
ORF8	21	S21R	agT	agA	20	52	All	0.000004
ORF8	21	S21R	Agt	Cgt	3	52	All	0.000001
ORF8	21	S21R	AgT	CgA	1	52	All	0
ORF8	21	S21I	aGt	aTt	47	47	AY.43	0.000208
ORF8	21	S21del	AGT	---	47	47	B.1.243	0.00327
ORF8	21	S21I	aGt	aTt	44	44	B.1.1.7	0.000039
ORF8	21	S21del	AGT	---	39	39	AY.29	0.000615
ORF8	21	S21G	Agt	Ggt	39	39	B.1.1.7	0.000035
ORF8	21	S21I	aGt	aTt	39	39	B.1.617.2	0.000147
ORF8	21	S21N	aGt	aAt	36	36	B.1.617.2	0.000136
ORF8	21	S21N	aGt	aAt	35	35	AY.20	0.00136
ORF8	21	S21I	aGt	aTt	35	35	AY.4	0.000054
ORF8	21	S21del	AGT	---	33	33	B.1.1.222	0.006732
ORF8	21	S21N	aGt	aAt	29	29	AY.44	0.000177
ORF8	21	S21N	aGt	aAt	28	28	B.1.1.189	0.04236
ORF8	21	S21N	aGt	aAt	25	25	B.1	0.000229
ORF8	21	S21del	AGT	---	25	25	B.1	0.000229
ORF8	21	S21del	AGT	---	23	23	B.1.1	0.000417
ORF8	21	S21I	aGt	aTt	19	19	B.1.1.519	0.000755
ORF8	21	S21R	agT	agG	18	18	AY.103	0.000112
ORF8	21	S21del	AGT	---	18	18	B	0.002301
ORF8	21	S21N	aGt	aAt	15	15	AY.102	0.000398
ORF8	21	S21N	aGt	aAt	14	14	AY.4	0.000022
ORF8	21	S21del	AGT	---	14	14	AY.48	0.006512
ORF8	21	S21I	aGt	aTt	14	14	P.1.14	0.000669
ORF8	21	S21R	agT	agA	13	13	B.1.623	0.006974
ORF8	21	S21I	aGt	aTt	12	12	B.1.1.433	0.017094
ORF8	21	S21G	Agt	Ggt	11	11	B.1.617.2	0.000041
ORF8	21	S21I	aGt	aTt	10	10	AY.44	0.000061
ORF8	21	S21I	aGt	aTt	9	9	AY.102	0.000239
ORF8	21	S21I	aGt	aTt	9	9	AY.104	0.017857
ORF8	21	S21del	AGT	---	9	9	B.1.160	0.000281
ORF8	21	S21del	AGT	---	9	9	B.1.177	0.000119
ORF8	21	S21C	Agt	Tgt	8	8	All	0.000002
ORF8	21	S21del1	agT	ag-	5	8	All	0.000001
ORF8	21	S21del1	AgT	-gA	3	8	All	0.000001
ORF8	21	S21N	aGt	aAt	8	8	AY.76	0.038647
ORF8	21	S21del	AGT	---	8	8	B.1.2	0.00007
ORF8	21	S21N	aGt	aAt	7	7	AY.118	0.000439
ORF8	21	S21N	aGt	aAt	7	7	AY.39	0.000173
ORF8	21	S21del	AGT	---	7	7	AY.44	0.000043
ORF8	21	S21del	AGT	---	7	7	AZ.5	0.024561
ORF8	21	S21del	AGT	---	7	7	B.1.1.265	0.022082
ORF8	21	S21N	aGt	aAt	7	7	B.1.2	0.000062
ORF8	21	S21del	AGT	---	7	7	B.1.36.16	0.009972
ORF8	21	S21del	AGT	---	7	7	P.1	0.00011
ORF8	21	S21del	AGT	---	7	7	P.1.14	0.000335
ORF8	21	S21T	aGt	aCt	6	6	All	0.000001
ORF8	21	S21I	aGt	aTt	6	6	AY.29	0.000095
ORF8	21	S21del	AGT	---	6	6	AY.29.1	0.001323
ORF8	21	S21del	AGT	---	6	6	AY.3	0.00006
ORF8	21	S21del	AGT	---	6	6	AY.3.1	0.000512
ORF8	21	S21I	aGt	aTt	6	6	AY.39	0.000148
ORF8	21	S21G	Agt	Ggt	6	6	AY.4	0.000009
ORF8	21	S21del	AGT	---	6	6	B.1.243.2	0.086957
ORF8	21	S21G	Agt	Ggt	6	6	B.1.429	0.000141
ORF8	21	S21del	AGT	---	6	6	B.1.526	0.000141
ORF8	21	S21del	AGT	---	6	6	B.1.617.2	0.000023
ORF8	21	S21S	agT	agC	5	5	AY.103	0.000031
ORF8	21	S21I	aGt	aTt	5	5	AY.23	0.000349
ORF8	21	S21I	aGt	aTt	5	5	AY.25	0.00003
ORF8	21	S21del	AGT	---	5	5	AY.43	0.000022
ORF8	21	S21G	Agt	Ggt	5	5	B.1	0.000046
ORF8	21	S21S	agT	agC	5	5	B.1.396	0.003529
ORF8	21	S21S	agT	agC	5	5	P.1.15	0.001162
ORF8	21	S21I	aGt	aTt	3	4		0.166667
ORF8	21	S21I	aGT	aTC	1	4		0.055556
ORF8	21	S21N	aGt	aAt	4	4	AY.1	0.001583
ORF8	21	S21G	Agt	Ggt	4	4	AY.103	0.000025
ORF8	21	S21S	agT	agC	4	4	AY.118	0.000251
ORF8	21	S21I	aGt	aTt	4	4	AY.119	0.000141
ORF8	21	S21G	Agt	Ggt	4	4	AY.20	0.000155
ORF8	21	S21N	aGt	aAt	4	4	AY.23	0.000279
ORF8	21	S21G	Agt	Ggt	4	4	AY.29	0.000063
ORF8	21	S21N	aGt	aAt	4	4	AY.33	0.000267
ORF8	21	S21del	AGT	---	4	4	AY.34	0.000388
ORF8	21	S21I	aGt	aTt	4	4	AY.36	0.000593
ORF8	21	S21I	aGt	aTt	4	4	AY.73	0.002661
ORF8	21	S21I	aGt	aTt	4	4	B.1.1	0.000073
ORF8	21	S21I	aGt	aTt	4	4	B.1.1.216	0.003562
ORF8	21	S21del	AGT	---	4	4	B.1.1.519	0.000159
ORF8	21	S21R	agT	agA	2	4	B.1.1.7	0.000002
ORF8	21	S21R	agT	agG	2	4	B.1.1.7	0.000002
ORF8	21	S21N	aGt	aAt	4	4	B.1.119	0.042105
ORF8	21	S21N	aGt	aAt	4	4	B.1.351	0.000119
ORF8	21	S21del	AGT	---	4	4	B.1.367	0.00317
ORF8	21	S21del	AGT	---	4	4	B.1.429	0.000094
ORF8	21	S21I	aGt	aTt	4	4	B.1.596	0.000349
ORF8	21	S21N	aGt	aAt	4	4	C.37	0.000464
ORF8	21	S21del	AGT	---	4	4	P.1.1	0.001271
ORF8	21	S21T	aGt	aCt	3	3	AY.20	0.000117
ORF8	21	S21R	agT	agG	3	3	AY.25	0.000018
ORF8	21	S21del	AGT	---	3	3	AY.4.2	0.000065
ORF8	21	S21N	aGt	aAt	3	3	AY.43	0.000013
ORF8	21	S21G	Agt	Ggt	3	3	AY.44	0.000018
ORF8	21	S21N	aGt	aAt	3	3	AY.5	0.000062
ORF8	21	S21I	aGt	aTt	3	3	AY.5	0.000062
ORF8	21	S21del	AGT	---	3	3	AY.98.1	0.000145
ORF8	21	S21G	Agt	Ggt	3	3	AY.99	0.003148
ORF8	21	S21S	agT	agC	3	3	B.1	0.000027
ORF8	21	S21R	agT	agA	2	3	B.1.1	0.000036
ORF8	21	S21R	agT	agG	1	3	B.1.1	0.000018
ORF8	21	S21I	aGt	aTt	3	3	B.1.177	0.00004
ORF8	21	S21I	aGt	aTt	3	3	B.1.429	0.000071
ORF8	21	S21del	AGT	---	3	3	B.1.509	0.002597
ORF8	21	S21S	agT	agC	3	3	B.1.617.2	0.000011
ORF8	21	S21del1	AgT	-gA	3	3	B.1.623	0.001609
ORF8	21	S21S	agT	agC	3	3	P.1	0.000047
ORF8	21	S21del	AGT	---	2	2		0.111111
ORF8	21	S21del2	AGt	--t	2	2		0.111111
ORF8	21	S21N	aGt	aAt	2	2		0.111111
ORF8	21	S21del	AGT	---	2	2	A.2.2	0.003378
ORF8	21	S21D	AGT	GAC	1	2	All	0
ORF8	21	S21D	AGt	GAt	1	2	All	0
ORF8	21	S21G	Agt	Ggt	2	2	AY.100	0.000092
ORF8	21	S21I	aGt	aTt	2	2	AY.107	0.000932
ORF8	21	S21del1	agT	ag-	2	2	AY.114	0.000462
ORF8	21	S21del	AGT	---	2	2	AY.114	0.000462
ORF8	21	S21del	AGT	---	2	2	AY.118	0.000125
ORF8	21	S21G	Agt	Ggt	2	2	AY.25	0.000012
ORF8	21	S21del	AGT	---	2	2	AY.25	0.000012
ORF8	21	S21S	agT	agC	2	2	AY.25	0.000012
ORF8	21	S21del	AGT	---	2	2	AY.26	0.000057
ORF8	21	S21N	aGt	aAt	2	2	AY.3	0.00002
ORF8	21	S21del	AGT	---	2	2	AY.37	0.000632
ORF8	21	S21S	agT	agC	2	2	AY.4	0.000003
ORF8	21	S21N	aGt	aAt	2	2	AY.46.4	0.000329
ORF8	21	S21S	agT	agC	2	2	AY.47	0.000062
ORF8	21	S21del	AGT	---	2	2	AY.47	0.000062
ORF8	21	S21G	Agt	Ggt	2	2	AY.6	0.000082
ORF8	21	S21del	AGT	---	2	2	AY.67	0.000929
ORF8	21	S21G	Agt	Ggt	2	2	AY.75	0.000112
ORF8	21	S21I	aGt	aTt	2	2	AY.9	0.000135
ORF8	21	S21I	aGt	aTt	2	2	B.1	0.000018
ORF8	21	S21N	aGt	aAt	2	2	B.1.1	0.000036
ORF8	21	S21del	AGT	---	2	2	B.1.1.214	0.000111
ORF8	21	S21del	AGT	---	2	2	B.1.1.306	0.000877
ORF8	21	S21del	AGT	---	2	2	B.1.1.318	0.000604
ORF8	21	S21S	agT	agC	2	2	B.1.1.7	0.000002
ORF8	21	S21del	AGT	---	2	2	B.1.1.70	0.000682
ORF8	21	S21del	AGT	---	2	2	B.1.126	0.002551
ORF8	21	S21G	Agt	Ggt	2	2	B.1.177	0.000026
ORF8	21	S21I	aGt	aTt	2	2	B.1.243	0.000139
ORF8	21	S21del	AGT	---	2	2	B.1.258	0.000133
ORF8	21	S21del	AGT	---	2	2	B.1.351	0.000059
ORF8	21	S21del	AGT	---	2	2	B.1.36	0.000292
ORF8	21	S21del	AGT	---	2	2	B.1.36.17	0.000988
ORF8	21	S21R	agT	agG	2	2	B.1.369	0.00057
ORF8	21	S21del	AGT	---	2	2	B.1.427	0.000101
ORF8	21	S21del	AGT	---	2	2	B.1.621	0.000177
ORF8	21	S21del	AGT	---	2	2	B.40	0.000729
ORF8	21	S21I	aGt	aTt	2	2	C.37	0.000232
ORF8	21	S21I	aGt	aTt	2	2	D.2	0.00015
ORF8	21	S21del	AGT	---	2	2	P.1.15	0.000465
ORF8	21	S21del	AGT	---	2	2	R.1	0.00018
ORF8	21	S21S	agT	agC	1	1		0.055556
ORF8	21	S21S	agT	agC	1	1	A	0.000387
ORF8	21	S21del	AGT	---	1	1	A.2.5	0.000499
ORF8	21	S21S	agT	agC	1	1	A.23.1	0.000704
ORF8	21	S21del	AGT	---	1	1	A.23.1	0.000704
ORF8	21	S21del	AGT	---	1	1	AD.2	0.000219
ORF8	21	S21del2	AGt	--t	1	1	AD.2	0.000219
ORF8	21	S21del	AGT	---	1	1	AE.4	0.043478
ORF8	21	S21F	AGt	TTt	1	1	All	0
ORF8	21	S21V	AGt	GTt	1	1	All	0
ORF8	21	S21I	aGt	aTt	1	1	AY.100	0.000046
ORF8	21	S21S	agT	agC	1	1	AY.102	0.000027
ORF8	21	S21del	AGT	---	1	1	AY.103	0.000006
ORF8	21	S21N	aGt	aAt	1	1	AY.103	0.000006
ORF8	21	S21V	AGt	GTt	1	1	AY.103	0.000006
ORF8	21	S21I	aGt	aTt	1	1	AY.105	0.000643
ORF8	21	S21N	aGt	aAt	1	1	AY.106	0.000335
ORF8	21	S21del	AGT	---	1	1	AY.108	0.001103
ORF8	21	S21I	aGt	aTt	1	1	AY.110	0.000113
ORF8	21	S21N	aGt	aAt	1	1	AY.116	0.000287
ORF8	21	S21I	aGt	aTt	1	1	AY.117	0.000085
ORF8	21	S21N	aGt	aAt	1	1	AY.2	0.000356
ORF8	21	S21S	agT	agC	1	1	AY.20	0.000039
ORF8	21	S21S	agT	agC	1	1	AY.23	0.00007
ORF8	21	S21del1	agT	ag-	1	1	AY.25	0.000006
ORF8	21	S21del2	AGt	--t	1	1	AY.25	0.000006
ORF8	21	S21I	aGt	aTt	1	1	AY.27	0.000065
ORF8	21	S21I	aGt	aTt	1	1	AY.29.1	0.000221
ORF8	21	S21S	agT	agC	1	1	AY.3	0.00001
ORF8	21	S21C	Agt	Tgt	1	1	AY.3	0.00001
ORF8	21	S21C	Agt	Tgt	1	1	AY.3.1	0.000085
ORF8	21	S21G	Agt	Ggt	1	1	AY.34	0.000097
ORF8	21	S21N	aGt	aAt	1	1	AY.36	0.000148
ORF8	21	S21T	aGt	aCt	1	1	AY.4	0.000002
ORF8	21	S21R	Agt	Cgt	1	1	AY.4	0.000002
ORF8	21	S21I	aGt	aTt	1	1	AY.4.2	0.000022
ORF8	21	S21N	aGt	aAt	1	1	AY.4.2	0.000022
ORF8	21	S21I	aGt	aTt	1	1	AY.4.2.1	0.000149
ORF8	21	S21I	aGt	aTt	1	1	AY.4.4	0.000409
ORF8	21	S21N	aGt	aAt	1	1	AY.42	0.00004
ORF8	21	S21G	Agt	Ggt	1	1	AY.43	0.000004
ORF8	21	S21R	agT	agG	1	1	AY.43	0.000004
ORF8	21	S21N	aGt	aAt	1	1	AY.45	0.000122
ORF8	21	S21I	aGt	aTt	1	1	AY.46.1	0.001027
ORF8	21	S21del	AGT	---	1	1	AY.46.4	0.000165
ORF8	21	S21N	aGt	aAt	1	1	AY.54	0.000095
ORF8	21	S21G	Agt	Ggt	1	1	AY.54	0.000095
ORF8	21	S21del	AGT	---	1	1	AY.55	0.000917
ORF8	21	S21I	aGt	aTt	1	1	AY.55	0.000917
ORF8	21	S21del	AGT	---	1	1	AY.75	0.000056
ORF8	21	S21del	AGT	---	1	1	AY.84	0.000437
ORF8	21	S21G	Agt	Ggt	1	1	AY.85	0.000427
ORF8	21	S21del	AGT	---	1	1	AY.9	0.000068
ORF8	21	S21S	agT	agC	1	1	AY.98.1	0.000048
ORF8	21	S21I	aGt	aTt	1	1	AY.98.1	0.000048
ORF8	21	S21D	AGt	GAt	1	1	AY.99	0.001049
ORF8	21	S21del	AGT	---	1	1	AY.99.1	0.001553
ORF8	21	S21G	Agt	Ggt	1	1	AY.99.2	0.000092
ORF8	21	S21S	agT	agC	1	1	AY.99.2	0.000092
ORF8	21	S21I	aGt	aTt	1	1	AY.99.2	0.000092
ORF8	21	S21T	aGt	aCt	1	1	AZ.5	0.003509
ORF8	21	S21del1	agT	ag-	1	1	B.1	0.000009
ORF8	21	S21R	agT	agA	1	1	B.1	0.000009
ORF8	21	S21C	Agt	Tgt	1	1	B.1	0.000009
ORF8	21	S21C	Agt	Tgt	1	1	B.1.1	0.000018
ORF8	21	S21F	AGt	TTt	1	1	B.1.1	0.000018
ORF8	21	S21S	agT	agC	1	1	B.1.1	0.000018
ORF8	21	S21del	AGT	---	1	1	B.1.1.174	0.003378
ORF8	21	S21del	AGT	---	1	1	B.1.1.216	0.00089
ORF8	21	S21G	Agt	Ggt	1	1	B.1.1.231	0.003096
ORF8	21	S21del	AGT	---	1	1	B.1.1.25	0.000569
ORF8	21	S21S	agT	agC	1	1	B.1.1.263	0.001558
ORF8	21	S21R	agT	agA	1	1	B.1.1.282	0.011628
ORF8	21	S21del	AGT	---	1	1	B.1.1.284	0.000107
ORF8	21	S21I	aGt	aTt	1	1	B.1.1.294	0.001266
ORF8	21	S21R	Agt	Cgt	1	1	B.1.1.306	0.000438
ORF8	21	S21C	Agt	Tgt	1	1	B.1.1.308	0.011765
ORF8	21	S21I	aGt	aTt	1	1	B.1.1.317	0.000412
ORF8	21	S21N	aGt	aAt	1	1	B.1.1.318	0.000302
ORF8	21	S21del	AGT	---	1	1	B.1.1.354	0.004386
ORF8	21	S21C	Agt	Tgt	1	1	B.1.1.396	0.045455
ORF8	21	S21del	AGT	---	1	1	B.1.1.50	0.000679
ORF8	21	S21I	aGt	aTt	1	1	B.1.1.63	0.000386
ORF8	21	S21del2	AGt	--t	1	1	B.1.1.7	0.000001
ORF8	21	S21C	Agt	Tgt	1	1	B.1.1.7	0.000001
ORF8	21	S21R	agT	agA	1	1	B.1.177	0.000013
ORF8	21	S21I	aGt	aTt	1	1	B.1.177.21	0.000076
ORF8	21	S21D	AGT	GAC	1	1	B.1.177.63	0.002703
ORF8	21	S21del	AGT	---	1	1	B.1.177.7	0.000165
ORF8	21	S21del	AGT	---	1	1	B.1.177.83	0.001481
ORF8	21	S21del	AGT	---	1	1	B.1.195	0.005025
ORF8	21	S21G	Agt	Ggt	1	1	B.1.2	0.000009
ORF8	21	S21del1	agT	ag-	1	1	B.1.2	0.000009
ORF8	21	S21del	AGT	---	1	1	B.1.210	0.002132
ORF8	21	S21I	aGt	aTt	1	1	B.1.221	0.000071
ORF8	21	S21S	agT	agC	1	1	B.1.243.1	0.022222
ORF8	21	S21C	Agt	Tgt	1	1	B.1.258	0.000067
ORF8	21	S21del	AGT	---	1	1	B.1.258.12	0.007874
ORF8	21	S21del	AGT	---	1	1	B.1.258.17	0.000104
ORF8	21	S21S	agT	agC	1	1	B.1.311	0.000275
ORF8	21	S21I	aGt	aTt	1	1	B.1.351	0.00003
ORF8	21	S21del	AGT	---	1	1	B.1.351.2	0.000303
ORF8	21	S21del	AGT	---	1	1	B.1.36.29	0.000517
ORF8	21	S21G	Agt	Ggt	1	1	B.1.396	0.000706
ORF8	21	S21G	Agt	Ggt	1	1	B.1.413	0.004255
ORF8	21	S21I	aGt	aTt	1	1	B.1.427	0.00005
ORF8	21	S21del2	AGt	--t	1	1	B.1.429	0.000024
ORF8	21	S21N	aGt	aAt	1	1	B.1.439	0.005917
ORF8	21	S21del	AGT	---	1	1	B.1.468	0.005714
ORF8	21	S21del	AGT	---	1	1	B.1.506	0.02381
ORF8	21	S21R	agT	agG	1	1	B.1.515	0.014493
ORF8	21	S21I	aGt	aTt	1	1	B.1.526	0.000024
ORF8	21	S21N	aGt	aAt	1	1	B.1.564	0.000426
ORF8	21	S21S	agT	agC	1	1	B.1.582	0.000491
ORF8	21	S21N	aGt	aAt	1	1	B.1.596	0.000087
ORF8	21	S21N	aGt	aAt	1	1	B.1.606	0.006024
ORF8	21	S21del	AGT	---	1	1	B.1.609	0.000479
ORF8	21	S21I	aGt	aTt	1	1	B.1.611	0.04
ORF8	21	S21T	aGt	aCt	1	1	B.1.617.2	0.000004
ORF8	21	S21R	AgT	CgA	1	1	B.1.617.2	0.000004
ORF8	21	S21N	aGt	aAt	1	1	B.1.623	0.000536
ORF8	21	S21del	AGT	---	1	1	B.1.630	0.005236
ORF8	21	S21I	aGt	aTt	1	1	B.1.637	0.000073
ORF8	21	S21G	Agt	Ggt	1	1	B.40	0.000364
ORF8	21	S21del	AGT	---	1	1	C.26	0.007353
ORF8	21	S21G	Agt	Ggt	1	1	C.37	0.000116
ORF8	21	S21N	aGt	aAt	1	1	D.2	0.000075
ORF8	21	S21del	AGT	---	1	1	N.3	0.005814
ORF8	21	S21del	AGT	---	1	1	N.6	0.007092
ORF8	21	S21N	aGt	aAt	1	1	P.1	0.000016
ORF8	21	S21del	AGT	---	1	1	P.1.12	0.000484
ORF8	21	S21N	aGt	aAt	1	1	P.1.15	0.000232
ORF8	21	S21I	aGt	aTt	1	1	P.1.15	0.000232
ORF8	21	S21N	aGt	aAt	1	1	P.1.17	0.000162
ORF8	21	S21del	AGT	---	1	1	P.1.17	0.000162
ORF8	21	S21S	agT	agC	1	1	P.1.17	0.000162
ORF8	21	S21I	aGt	aTt	1	1	P.1.17	0.000162
ORF8	21	S21R	Agt	Cgt	1	1	P.1.7	0.000319
ORF8	21	S21del	AGT	---	1	1	Q.2	0.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.