CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 2

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF82K2deldelAAA---76607660127897-27899
ORF82K2QnonsynAaaCaa643643127897-27899
ORF82K2KsynaaAaaG403403127897-27899
ORF82K2EnonsynAaaGaa8888127897-27899
ORF82K2NnonsynaaAaaT81550.67901227897-27899
ORF82K2NnonsynaaAaaC81260.32098827897-27899
ORF82K2TnonsynaAaaCa58530.91379327897-27899
ORF82K2TnonsynaAAaCT5830.051724127897-27899
ORF82K2TnonsynaAAaCG5820.034482827897-27899
ORF82K2XnonsynAaaTaa5050127897-27899
ORF82K2RnonsynaAaaGa29260.89655227897-27899
ORF82K2RnonsynAAaCGa2930.10344827897-27899
ORF82K2InonsynaAaaTa23220.95652227897-27899
ORF82K2InonsynaAAaTT2310.043478327897-27899
ORF82K2SnonsynAAaTCa13100.76923127897-27899
ORF82K2SnonsynAAATCT1330.23076927897-27899
ORF82K2del2delaAAa--750.71428627897-27899
ORF82K2LnonsynAAaCTa740.57142927897-27899
ORF82K2LnonsynAAACTG720.28571427897-27899
ORF82K2del2delAAa--a720.28571427897-27899
ORF82K2LnonsynAAaTTa710.14285727897-27899
ORF82K2del1delAaa-aa630.527897-27899
ORF82K2del1delaaAaa-630.527897-27899
ORF82K2YnonsynAaATaT530.627897-27899
ORF82K2HnonsynAaACaT530.627897-27899
ORF82K2YnonsynAaATaC520.427897-27899
ORF82K2HnonsynAaACaC520.427897-27899
ORF82K2VnonsynAAAGTG320.66666727897-27899
ORF82K2VnonsynAAaGTa310.33333327897-27899
ORF82K2FnonsynAAATTT22127897-27899
ORF82K2AnonsynAAAGCG22127897-27899
ORF82K2PnonsynAAACCG22127897-27899
ORF82K2CnonsynAAATGT11127897-27899
ORF82K2GnonsynAAaGGa11127897-27899

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF82K2delAAA---76607660All0.001465
ORF82K2delAAA---31023102B.1.1.3180.936029
ORF82K2delAAA---11621162AZ.20.954023
ORF82K2delAAA---11531153AZ.11
ORF82K2QAaaCaa643643All0.000123
ORF82K2QAaaCaa618618P.30.985646
ORF82K2delAAA---614614AZ.30.933131
ORF82K2KaaAaaG403403All0.000077
ORF82K2delAAA---378378B.1.6250.889412
ORF82K2delAAA---274274AZ.40.919463
ORF82K2delAAA---231231AZ.50.810526
ORF82K2KaaAaaG135135B.1.438.10.01448
ORF82K2delAAA---110110AZ.2.10.894309
ORF82K2KaaAaaG104104B.1.1.3170.042816
ORF82K2delAAA---9393AZ.60.781513
ORF82K2EAaaGaa8888All0.000017
ORF82K2NaaAaaT5581All0.000011
ORF82K2NaaAaaC2681All0.000005
ORF82K2delAAA---6969AY.40.000107
ORF82K2delAAA---6565B.1.1.5280.3125
ORF82K2delAAA---6363B.1.1.70.000056
ORF82K2TaAaaCa5358All0.00001
ORF82K2TaAAaCT358All0.000001
ORF82K2TaAAaCG258All0
ORF82K2XAaaTaa5050All0.00001
ORF82K2delAAA---4949B.1.2430.00341
ORF82K2delAAA---4242B.10.000385
ORF82K2delAAA---3737AY.290.000584
ORF82K2RaAaaGa2629All0.000005
ORF82K2RAAaCGa329All0.000001
ORF82K2NaaAaaT2829B.1.1.70.000025
ORF82K2NaaAaaC129B.1.1.70.000001
ORF82K2IaAaaTa2223All0.000004
ORF82K2IaAAaTT123All0
ORF82K2KaaAaaG2121B.1.1.70.000019
ORF82K2TaAaaCa2020B.1.1.70.000018
ORF82K2KaaAaaG1717AY.290.000268
ORF82K2KaaAaaG1717AY.40.000026
ORF82K2delAAA---1717B0.002173
ORF82K2delAAA---1414B.1.10.000254
ORF82K2KaaAaaG1414B.1.1600.000437
ORF82K2EAaaGaa1414B.1.214.20.008393
ORF82K2SAAaTCa1013All0.000002
ORF82K2SAAATCT313All0.000001
ORF82K2XAaaTaa1313P.10.000205
ORF82K2KaaAaaG1212B.1.1.500.008147
ORF82K2XAaaTaa1010AY.470.000311
ORF82K2TaAaaCa1010B.1.177.810.001893
ORF82K2delAAA---1010B.1.20.000088
ORF82K2EAaaGaa99B.1.617.20.000034
ORF82K2KaaAaaG88AY.470.000249
ORF82K2QAaaCaa88B.10.000073
ORF82K2TaAaaCa58B.1.6250.011765
ORF82K2TaAAaCT38B.1.6250.007059
ORF82K2del2aAAa--57All0.000001
ORF82K2LAAaCTa47All0.000001
ORF82K2del2AAa--a27All0
ORF82K2LAAACTG27All0
ORF82K2LAAaTTa17All0
ORF82K2EAaaGaa77B.10.000064
ORF82K2delAAA---77B.1.1.2650.022082
ORF82K2EAaaGaa77B.1.1.70.000006
ORF82K2KaaAaaG77B.1.2430.000487
ORF82K2delAAA---77B.1.617.20.000026
ORF82K2del1aaAaa-36All0.000001
ORF82K2del1Aaa-aa36All0.000001
ORF82K2delAAA---66AY.29.10.001323
ORF82K2delAAA---66AY.30.00006
ORF82K2EAaaGaa66B.1.10.000109
ORF82K2delAAA---66B.1.1.340.078947
ORF82K2XAaaTaa66B.1.1.500.004073
ORF82K2NaaAaaT66B.1.1770.000079
ORF82K2KaaAaaG66B.1.2400.001293
ORF82K2delAAA---66B.1.243.20.086957
ORF82K2KaaAaaG66B.1.5090.005195
ORF82K2SAAaTCa36B.1.6250.007059
ORF82K2SAAATCT36B.1.6250.007059
ORF82K2delAAA---66P.10.000095
ORF82K2EAaaGaa66P.10.000095
ORF82K2QAaaCaa66P.50.082192
ORF82K2HAaACaT35All0.000001
ORF82K2YAaATaT35All0.000001
ORF82K2HAaACaC25All0
ORF82K2YAaATaC25All0
ORF82K2delAAA---55AY.3.10.000426
ORF82K2EAaaGaa55AY.420.000201
ORF82K2delAAA---55AY.440.00003
ORF82K2SAAaTCa55B.1.1.3180.001509
ORF82K2delAAA---55B.1.1.5190.000199
ORF82K2KaaAaaG55B.1.617.20.000019
ORF82K2NaaAaaC55Q.40.002274
ORF82K2NaaAaaC240.111111
ORF82K2YAaATaT240.111111
ORF82K2YAaATaC240.111111
ORF82K2HAaACaT240.111111
ORF82K2HAaACaC240.111111
ORF82K2NaaAaaT240.111111
ORF82K2delAAA---44AT.10.020513
ORF82K2EAaaGaa44AY.30.00004
ORF82K2RaAaaGa44B.1.1.70.000004
ORF82K2delAAA---44B.1.1280.002541
ORF82K2RaAaaGa44B.1.177.570.001124
ORF82K2KaaAaaG44B.1.177.820.001909
ORF82K2KaaAaaG44B.1.3370.022346
ORF82K2delAAA---44B.1.5260.000094
ORF82K2NaaAaaT33A.10.000846
ORF82K2KaaAaaG33A.210.00831
ORF82K2VAAAGTG23All0
ORF82K2VAAaGTa13All0
ORF82K2EAaaGaa33AY.1000.000138
ORF82K2NaaAaaC33AY.1030.000019
ORF82K2delAAA---33AY.1030.000019
ORF82K2delAAA---33AY.370.000948
ORF82K2TaAaaCa33AY.40.000005
ORF82K2delAAA---33AY.480.001395
ORF82K2IaAaaTa33B0.000383
ORF82K2KaaAaaG33B.10.000027
ORF82K2IaAaaTa33B.1.10.000054
ORF82K2delAAA---33B.1.1.5070.026087
ORF82K2del2aAAa--33B.1.1.70.000003
ORF82K2delAAA---33B.1.1260.003827
ORF82K2KaaAaaG33B.1.177.810.000568
ORF82K2TaAAaCG23B.1.20.000018
ORF82K2TaAaaCa13B.1.20.000009
ORF82K2RAAaCGa23B.1.360.000292
ORF82K2RaAaaGa13B.1.360.000146
ORF82K2XAaaTaa33B.1.617.20.000011
ORF82K2NaaAaaC23P.10.000032
ORF82K2NaaAaaT13P.10.000016
ORF82K2delAAA---33P.1.150.000697
ORF82K2AAAAGCG220.111111
ORF82K2LAAACTG220.111111
ORF82K2VAAAGTG220.111111
ORF82K2XAaaTaa220.111111
ORF82K2PAAACCG220.111111
ORF82K2delAAA---220.111111
ORF82K2QAaaCaa220.111111
ORF82K2EAaaGaa220.111111
ORF82K2delAAA---22A.2.20.003378
ORF82K2delAAA---22AD.20.000438
ORF82K2FAAATTT22All0
ORF82K2AAAAGCG22All0
ORF82K2PAAACCG22All0
ORF82K2KaaAaaG22AY.1020.000053
ORF82K2delAAA---22AY.1180.000125
ORF82K2delAAA---22AY.130.000322
ORF82K2delAAA---22AY.250.000012
ORF82K2del1aaAaa-22AY.260.000057
ORF82K2NaaAaaC12AY.30.00001
ORF82K2IaAaaTa12AY.30.00001
ORF82K2IaAAaTT12AY.30.00001
ORF82K2NaaAaaT12AY.30.00001
ORF82K2delAAA---22AY.390.000049
ORF82K2NaaAaaT22AY.40.000003
ORF82K2XAaaTaa22AY.40.000003
ORF82K2RaAaaGa22AY.40.000003
ORF82K2EAaaGaa22AY.40.000003
ORF82K2delAAA---22AY.4.20.000043
ORF82K2TaAaaCa22AY.430.000009
ORF82K2EAaaGaa22AY.430.000009
ORF82K2NaaAaaC22AY.430.000009
ORF82K2delAAA---22AY.430.000009
ORF82K2EAaaGaa22AY.440.000012
ORF82K2delAAA---22AY.470.000062
ORF82K2EAaaGaa22AY.730.001331
ORF82K2NaaAaaC22AY.870.001665
ORF82K2IaAaaTa22AY.99.20.000184
ORF82K2EAaaGaa22B0.000256
ORF82K2TaAaaCa22B.10.000018
ORF82K2NaaAaaT22B.1.10.000036
ORF82K2delAAA---22B.1.1.2140.000111
ORF82K2XAaaTaa22B.1.1.250.001137
ORF82K2delAAA---22B.1.1.3060.000877
ORF82K2QAaaCaa22B.1.1.5240.041667
ORF82K2IaAaaTa22B.1.1.70.000002
ORF82K2EAaaGaa22B.1.1.700.000682
ORF82K2delAAA---22B.1.1570.00597
ORF82K2QAaaCaa22B.1.1770.000026
ORF82K2XAaaTaa22B.1.1770.000026
ORF82K2EAaaGaa22B.1.1770.000026
ORF82K2RaAaaGa22B.1.20.000018
ORF82K2KaaAaaG22B.1.20.000018
ORF82K2KaaAaaG22B.1.2370.00995
ORF82K2delAAA---22B.1.2580.000133
ORF82K2XAaaTaa22B.1.258.170.000208
ORF82K2delAAA---22B.1.4270.000101
ORF82K2delAAA---22B.1.4290.000047
ORF82K2delAAA---22B.1.5680.002222
ORF82K2KaaAaaG22B.1.5960.000174
ORF82K2delAAA---22B.1.6210.000177
ORF82K2RaAaaGa22B.1.6370.000146
ORF82K2KaaAaaG22P.10.000032
ORF82K2TaAaaCa22P.10.000032
ORF82K2SAAaTCa22P.10.000032
ORF82K2LAAaCTa22P.10.000032
ORF82K2IaAaaTa22P.10.000032
ORF82K2delAAA---22P.1.120.000968
ORF82K2NaaAaaT11A.2.40.003367
ORF82K2delAAA---11A.2.50.000499
ORF82K2delAAA---11A.230.010526
ORF82K2delAAA---11A.23.10.000704
ORF82K2GAAaGGa11All0
ORF82K2CAAATGT11All0
ORF82K2KaaAaaG11AY.1000.000046
ORF82K2delAAA---11AY.1000.000046
ORF82K2TaAaaCa11AY.1020.000027
ORF82K2del1Aaa-aa11AY.1030.000006
ORF82K2XAaaTaa11AY.1030.000006
ORF82K2KaaAaaG11AY.1030.000006
ORF82K2delAAA---11AY.1070.000466
ORF82K2delAAA---11AY.1080.001103
ORF82K2delAAA---11AY.1190.000035
ORF82K2delAAA---11AY.1200.000037
ORF82K2KaaAaaG11AY.120.2.10.000498
ORF82K2delAAA---11AY.200.000039
ORF82K2IaAaaTa11AY.250.000006
ORF82K2NaaAaaT11AY.250.000006
ORF82K2delAAA---11AY.260.000028
ORF82K2YAaATaT11AY.30.00001
ORF82K2LAAaTTa11AY.30.00001
ORF82K2KaaAaaG11AY.30.00001
ORF82K2FAAATTT11AY.30.00001
ORF82K2XAaaTaa11AY.30.00001
ORF82K2delAAA---11AY.360.000148
ORF82K2del2aAAa--11AY.40.000002
ORF82K2IaAaaTa11AY.40.000002
ORF82K2del1aaAaa-11AY.40.000002
ORF82K2TaAaaCa11AY.4.20.000022
ORF82K2XAaaTaa11AY.4.50.000107
ORF82K2RaAaaGa11AY.4.50.000107
ORF82K2CAAATGT11AY.430.000004
ORF82K2FAAATTT11AY.430.000004
ORF82K2LAAaCTa11AY.430.000004
ORF82K2RaAaaGa11AY.430.000004
ORF82K2NaaAaaT11AY.440.000006
ORF82K2KaaAaaG11AY.440.000006
ORF82K2IaAaaTa11AY.440.000006
ORF82K2delAAA---11AY.550.000917
ORF82K2KaaAaaG11AY.570.000656
ORF82K2LAAaCTa11AY.580.000907
ORF82K2delAAA---11AY.670.000464
ORF82K2NaaAaaC11AY.740.000116
ORF82K2delAAA---11AY.740.000116
ORF82K2delAAA---11AY.750.000056
ORF82K2HAaACaT11AY.840.000437
ORF82K2KaaAaaG11AY.9.10.000084
ORF82K2EAaaGaa11AY.98.10.000048
ORF82K2delAAA---11AY.990.001049
ORF82K2delAAA---11AY.99.10.001553
ORF82K2del1Aaa-aa11B0.000128
ORF82K2IaAaaTa11B.10.000009
ORF82K2NaaAaaT11B.10.000009
ORF82K2XAaaTaa11B.10.000009
ORF82K2RaAaaGa11B.10.000009
ORF82K2QAaaCaa11B.1.10.000018
ORF82K2KaaAaaG11B.1.10.000018
ORF82K2RaAaaGa11B.1.10.000018
ORF82K2XAaaTaa11B.1.10.000018
ORF82K2NaaAaaC11B.1.1.100.001115
ORF82K2delAAA---11B.1.1.2160.00089
ORF82K2NaaAaaT11B.1.1.2220.000204
ORF82K2KaaAaaG11B.1.1.2410.00207
ORF82K2QAaaCaa11B.1.1.280.000311
ORF82K2NaaAaaC11B.1.1.280.000311
ORF82K2EAaaGaa11B.1.1.2820.011628
ORF82K2delAAA---11B.1.1.2840.000107
ORF82K2NaaAaaT11B.1.1.2910.000742
ORF82K2KaaAaaG11B.1.1.2910.000742
ORF82K2KaaAaaG11B.1.1.3030.002762
ORF82K2del2AAa--a11B.1.1.3180.000302
ORF82K2delAAA---11B.1.1.3540.004386
ORF82K2delAAA---11B.1.1.370.000193
ORF82K2NaaAaaC11B.1.1.3980.003226
ORF82K2NaaAaaT11B.1.1.4340.000349
ORF82K2delAAA---11B.1.1.440.00241
ORF82K2del2AAa--a11B.1.1.5250.005464
ORF82K2TaAaaCa11B.1.1.5280.004808
ORF82K2delAAA---11B.1.110.30.000718
ORF82K2del1Aaa-aa11B.1.1260.001276
ORF82K2KaaAaaG11B.1.1430.021277
ORF82K2EAaaGaa11B.1.1470.000756
ORF82K2XAaaTaa11B.1.1600.000031
ORF82K2NaaAaaT11B.1.1600.000031
ORF82K2delAAA---11B.1.1600.000031
ORF82K2XAaaTaa11B.1.160.190.035714
ORF82K2RaAaaGa11B.1.160.290.004219
ORF82K2QAaaCaa11B.1.1700.00431
ORF82K2delAAA---11B.1.1770.000013
ORF82K2RaAaaGa11B.1.1770.000013
ORF82K2KaaAaaG11B.1.1770.000013
ORF82K2delAAA---11B.1.177.500.004695
ORF82K2delAAA---11B.1.177.540.000606
ORF82K2delAAA---11B.1.177.630.002703
ORF82K2delAAA---11B.1.177.70.000165
ORF82K2delAAA---11B.1.177.830.001481
ORF82K2delAAA---11B.1.1950.005025
ORF82K2EAaaGaa11B.1.20.000009
ORF82K2delAAA---11B.1.214.20.0006
ORF82K2NaaAaaT11B.1.2400.000216
ORF82K2KaaAaaG11B.1.2580.000067
ORF82K2TaAaaCa11B.1.2580.000067
ORF82K2EAaaGaa11B.1.258.110.000396
ORF82K2delAAA---11B.1.3510.00003
ORF82K2KaaAaaG11B.1.3510.00003
ORF82K2IaAaaTa11B.1.3510.00003
ORF82K2EAaaGaa11B.1.3510.00003
ORF82K2QAaaCaa11B.1.360.000146
ORF82K2NaaAaaC11B.1.360.000146
ORF82K2IaAaaTa11B.1.36.180.00042
ORF82K2XAaaTaa11B.1.36.290.000517
ORF82K2delAAA---11B.1.36.290.000517
ORF82K2NaaAaaC11B.1.36.80.001
ORF82K2RaAaaGa11B.1.3610.001289
ORF82K2KaaAaaG11B.1.3670.000792
ORF82K2RaAaaGa11B.1.3670.000792
ORF82K2KaaAaaG11B.1.3690.000285
ORF82K2QAaaCaa11B.1.3960.000706
ORF82K2RaAaaGa11B.1.4040.001302
ORF82K2delAAA---11B.1.4090.000781
ORF82K2RaAaaGa11B.1.4270.00005
ORF82K2EAaaGaa11B.1.4270.00005
ORF82K2EAaaGaa11B.1.4290.000024
ORF82K2NaaAaaC11B.1.4560.003268
ORF82K2RAAaCGa11B.1.4680.005714
ORF82K2delAAA---11B.1.4700.001404
ORF82K2IaAaaTa11B.1.5200.021739
ORF82K2KaaAaaG11B.1.5240.001406
ORF82K2del2aAAa--11B.1.5250.000113
ORF82K2KaaAaaG11B.1.5270.003704
ORF82K2delAAA---11B.1.5610.000397
ORF82K2delAAA---11B.1.5760.000907
ORF82K2delAAA---11B.1.5820.000491
ORF82K2delAAA---11B.1.5960.000087
ORF82K2KaaAaaG11B.1.617.10.000129
ORF82K2EAaaGaa11B.1.619.10.000641
ORF82K2TaAaaCa11B.1.6200.000946
ORF82K2IaAaaTa11B.1.6260.005714
ORF82K2NaaAaaT11B.1.6280.000352
ORF82K2delAAA---11B.1.6300.005236
ORF82K2KaaAaaG11B.1.6370.000073
ORF82K2delAAA---11B.230.002924
ORF82K2TaAaaCa11B.230.002924
ORF82K2delAAA---11C.260.007353
ORF82K2RaAaaGa11C.36.30.000567
ORF82K2delAAA---11C.370.000116
ORF82K2KaaAaaG11C.370.000116
ORF82K2TaAaaCa11C.370.000116
ORF82K2delAAA---11C.40.01
ORF82K2TaAaaCa11D.20.000075
ORF82K2EAaaGaa11D.20.000075
ORF82K2delAAA---11N.60.007092
ORF82K2NaaAaaC11P.1.120.000484
ORF82K2delAAA---11P.1.140.000048
ORF82K2delAAA---11P.1.170.000162
ORF82K2KaaAaaG11P.1.170.000162
ORF82K2GAAaGGa11P.1.170.000162
ORF82K2IaAaaTa11P.1.20.001156
ORF82K2EAaaGaa11P.1.20.001156
ORF82K2VAAaGTa11P.1.20.001156
ORF82K2KaaAaaG11Q.30.000145
ORF82K2delAAA---11Q.80.000165
ORF82K2delAAA---11R.10.00009