CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 2 | K2del | del | AAA | --- | 7660 | 7660 | 1 | 27897-27899 | |
ORF8 | 2 | K2Q | nonsyn | Aaa | Caa | 643 | 643 | 1 | 27897-27899 | |
ORF8 | 2 | K2K | syn | aaA | aaG | 403 | 403 | 1 | 27897-27899 | |
ORF8 | 2 | K2E | nonsyn | Aaa | Gaa | 88 | 88 | 1 | 27897-27899 | |
ORF8 | 2 | K2N | nonsyn | aaA | aaT | 81 | 55 | 0.679012 | 27897-27899 | |
ORF8 | 2 | K2N | nonsyn | aaA | aaC | 81 | 26 | 0.320988 | 27897-27899 | |
ORF8 | 2 | K2T | nonsyn | aAa | aCa | 58 | 53 | 0.913793 | 27897-27899 | |
ORF8 | 2 | K2T | nonsyn | aAA | aCT | 58 | 3 | 0.0517241 | 27897-27899 | |
ORF8 | 2 | K2T | nonsyn | aAA | aCG | 58 | 2 | 0.0344828 | 27897-27899 | |
ORF8 | 2 | K2X | nonsyn | Aaa | Taa | 50 | 50 | 1 | 27897-27899 | |
ORF8 | 2 | K2R | nonsyn | aAa | aGa | 29 | 26 | 0.896552 | 27897-27899 | |
ORF8 | 2 | K2R | nonsyn | AAa | CGa | 29 | 3 | 0.103448 | 27897-27899 | |
ORF8 | 2 | K2I | nonsyn | aAa | aTa | 23 | 22 | 0.956522 | 27897-27899 | |
ORF8 | 2 | K2I | nonsyn | aAA | aTT | 23 | 1 | 0.0434783 | 27897-27899 | |
ORF8 | 2 | K2S | nonsyn | AAa | TCa | 13 | 10 | 0.769231 | 27897-27899 | |
ORF8 | 2 | K2S | nonsyn | AAA | TCT | 13 | 3 | 0.230769 | 27897-27899 | |
ORF8 | 2 | K2del2 | del | aAA | a-- | 7 | 5 | 0.714286 | 27897-27899 | |
ORF8 | 2 | K2L | nonsyn | AAa | CTa | 7 | 4 | 0.571429 | 27897-27899 | |
ORF8 | 2 | K2L | nonsyn | AAA | CTG | 7 | 2 | 0.285714 | 27897-27899 | |
ORF8 | 2 | K2del2 | del | AAa | --a | 7 | 2 | 0.285714 | 27897-27899 | |
ORF8 | 2 | K2L | nonsyn | AAa | TTa | 7 | 1 | 0.142857 | 27897-27899 | |
ORF8 | 2 | K2del1 | del | Aaa | -aa | 6 | 3 | 0.5 | 27897-27899 | |
ORF8 | 2 | K2del1 | del | aaA | aa- | 6 | 3 | 0.5 | 27897-27899 | |
ORF8 | 2 | K2Y | nonsyn | AaA | TaT | 5 | 3 | 0.6 | 27897-27899 | |
ORF8 | 2 | K2H | nonsyn | AaA | CaT | 5 | 3 | 0.6 | 27897-27899 | |
ORF8 | 2 | K2Y | nonsyn | AaA | TaC | 5 | 2 | 0.4 | 27897-27899 | |
ORF8 | 2 | K2H | nonsyn | AaA | CaC | 5 | 2 | 0.4 | 27897-27899 | |
ORF8 | 2 | K2V | nonsyn | AAA | GTG | 3 | 2 | 0.666667 | 27897-27899 | |
ORF8 | 2 | K2V | nonsyn | AAa | GTa | 3 | 1 | 0.333333 | 27897-27899 | |
ORF8 | 2 | K2F | nonsyn | AAA | TTT | 2 | 2 | 1 | 27897-27899 | |
ORF8 | 2 | K2A | nonsyn | AAA | GCG | 2 | 2 | 1 | 27897-27899 | |
ORF8 | 2 | K2P | nonsyn | AAA | CCG | 2 | 2 | 1 | 27897-27899 | |
ORF8 | 2 | K2C | nonsyn | AAA | TGT | 1 | 1 | 1 | 27897-27899 | |
ORF8 | 2 | K2G | nonsyn | AAa | GGa | 1 | 1 | 1 | 27897-27899 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 2 | K2del | AAA | --- | 7660 | 7660 | All | 0.001465 |
ORF8 | 2 | K2del | AAA | --- | 3102 | 3102 | B.1.1.318 | 0.936029 |
ORF8 | 2 | K2del | AAA | --- | 1162 | 1162 | AZ.2 | 0.954023 |
ORF8 | 2 | K2del | AAA | --- | 1153 | 1153 | AZ.1 | 1 |
ORF8 | 2 | K2Q | Aaa | Caa | 643 | 643 | All | 0.000123 |
ORF8 | 2 | K2Q | Aaa | Caa | 618 | 618 | P.3 | 0.985646 |
ORF8 | 2 | K2del | AAA | --- | 614 | 614 | AZ.3 | 0.933131 |
ORF8 | 2 | K2K | aaA | aaG | 403 | 403 | All | 0.000077 |
ORF8 | 2 | K2del | AAA | --- | 378 | 378 | B.1.625 | 0.889412 |
ORF8 | 2 | K2del | AAA | --- | 274 | 274 | AZ.4 | 0.919463 |
ORF8 | 2 | K2del | AAA | --- | 231 | 231 | AZ.5 | 0.810526 |
ORF8 | 2 | K2K | aaA | aaG | 135 | 135 | B.1.438.1 | 0.01448 |
ORF8 | 2 | K2del | AAA | --- | 110 | 110 | AZ.2.1 | 0.894309 |
ORF8 | 2 | K2K | aaA | aaG | 104 | 104 | B.1.1.317 | 0.042816 |
ORF8 | 2 | K2del | AAA | --- | 93 | 93 | AZ.6 | 0.781513 |
ORF8 | 2 | K2E | Aaa | Gaa | 88 | 88 | All | 0.000017 |
ORF8 | 2 | K2N | aaA | aaT | 55 | 81 | All | 0.000011 |
ORF8 | 2 | K2N | aaA | aaC | 26 | 81 | All | 0.000005 |
ORF8 | 2 | K2del | AAA | --- | 69 | 69 | AY.4 | 0.000107 |
ORF8 | 2 | K2del | AAA | --- | 65 | 65 | B.1.1.528 | 0.3125 |
ORF8 | 2 | K2del | AAA | --- | 63 | 63 | B.1.1.7 | 0.000056 |
ORF8 | 2 | K2T | aAa | aCa | 53 | 58 | All | 0.00001 |
ORF8 | 2 | K2T | aAA | aCT | 3 | 58 | All | 0.000001 |
ORF8 | 2 | K2T | aAA | aCG | 2 | 58 | All | 0 |
ORF8 | 2 | K2X | Aaa | Taa | 50 | 50 | All | 0.00001 |
ORF8 | 2 | K2del | AAA | --- | 49 | 49 | B.1.243 | 0.00341 |
ORF8 | 2 | K2del | AAA | --- | 42 | 42 | B.1 | 0.000385 |
ORF8 | 2 | K2del | AAA | --- | 37 | 37 | AY.29 | 0.000584 |
ORF8 | 2 | K2R | aAa | aGa | 26 | 29 | All | 0.000005 |
ORF8 | 2 | K2R | AAa | CGa | 3 | 29 | All | 0.000001 |
ORF8 | 2 | K2N | aaA | aaT | 28 | 29 | B.1.1.7 | 0.000025 |
ORF8 | 2 | K2N | aaA | aaC | 1 | 29 | B.1.1.7 | 0.000001 |
ORF8 | 2 | K2I | aAa | aTa | 22 | 23 | All | 0.000004 |
ORF8 | 2 | K2I | aAA | aTT | 1 | 23 | All | 0 |
ORF8 | 2 | K2K | aaA | aaG | 21 | 21 | B.1.1.7 | 0.000019 |
ORF8 | 2 | K2T | aAa | aCa | 20 | 20 | B.1.1.7 | 0.000018 |
ORF8 | 2 | K2K | aaA | aaG | 17 | 17 | AY.29 | 0.000268 |
ORF8 | 2 | K2K | aaA | aaG | 17 | 17 | AY.4 | 0.000026 |
ORF8 | 2 | K2del | AAA | --- | 17 | 17 | B | 0.002173 |
ORF8 | 2 | K2del | AAA | --- | 14 | 14 | B.1.1 | 0.000254 |
ORF8 | 2 | K2K | aaA | aaG | 14 | 14 | B.1.160 | 0.000437 |
ORF8 | 2 | K2E | Aaa | Gaa | 14 | 14 | B.1.214.2 | 0.008393 |
ORF8 | 2 | K2S | AAa | TCa | 10 | 13 | All | 0.000002 |
ORF8 | 2 | K2S | AAA | TCT | 3 | 13 | All | 0.000001 |
ORF8 | 2 | K2X | Aaa | Taa | 13 | 13 | P.1 | 0.000205 |
ORF8 | 2 | K2K | aaA | aaG | 12 | 12 | B.1.1.50 | 0.008147 |
ORF8 | 2 | K2X | Aaa | Taa | 10 | 10 | AY.47 | 0.000311 |
ORF8 | 2 | K2T | aAa | aCa | 10 | 10 | B.1.177.81 | 0.001893 |
ORF8 | 2 | K2del | AAA | --- | 10 | 10 | B.1.2 | 0.000088 |
ORF8 | 2 | K2E | Aaa | Gaa | 9 | 9 | B.1.617.2 | 0.000034 |
ORF8 | 2 | K2K | aaA | aaG | 8 | 8 | AY.47 | 0.000249 |
ORF8 | 2 | K2Q | Aaa | Caa | 8 | 8 | B.1 | 0.000073 |
ORF8 | 2 | K2T | aAa | aCa | 5 | 8 | B.1.625 | 0.011765 |
ORF8 | 2 | K2T | aAA | aCT | 3 | 8 | B.1.625 | 0.007059 |
ORF8 | 2 | K2del2 | aAA | a-- | 5 | 7 | All | 0.000001 |
ORF8 | 2 | K2L | AAa | CTa | 4 | 7 | All | 0.000001 |
ORF8 | 2 | K2del2 | AAa | --a | 2 | 7 | All | 0 |
ORF8 | 2 | K2L | AAA | CTG | 2 | 7 | All | 0 |
ORF8 | 2 | K2L | AAa | TTa | 1 | 7 | All | 0 |
ORF8 | 2 | K2E | Aaa | Gaa | 7 | 7 | B.1 | 0.000064 |
ORF8 | 2 | K2del | AAA | --- | 7 | 7 | B.1.1.265 | 0.022082 |
ORF8 | 2 | K2E | Aaa | Gaa | 7 | 7 | B.1.1.7 | 0.000006 |
ORF8 | 2 | K2K | aaA | aaG | 7 | 7 | B.1.243 | 0.000487 |
ORF8 | 2 | K2del | AAA | --- | 7 | 7 | B.1.617.2 | 0.000026 |
ORF8 | 2 | K2del1 | aaA | aa- | 3 | 6 | All | 0.000001 |
ORF8 | 2 | K2del1 | Aaa | -aa | 3 | 6 | All | 0.000001 |
ORF8 | 2 | K2del | AAA | --- | 6 | 6 | AY.29.1 | 0.001323 |
ORF8 | 2 | K2del | AAA | --- | 6 | 6 | AY.3 | 0.00006 |
ORF8 | 2 | K2E | Aaa | Gaa | 6 | 6 | B.1.1 | 0.000109 |
ORF8 | 2 | K2del | AAA | --- | 6 | 6 | B.1.1.34 | 0.078947 |
ORF8 | 2 | K2X | Aaa | Taa | 6 | 6 | B.1.1.50 | 0.004073 |
ORF8 | 2 | K2N | aaA | aaT | 6 | 6 | B.1.177 | 0.000079 |
ORF8 | 2 | K2K | aaA | aaG | 6 | 6 | B.1.240 | 0.001293 |
ORF8 | 2 | K2del | AAA | --- | 6 | 6 | B.1.243.2 | 0.086957 |
ORF8 | 2 | K2K | aaA | aaG | 6 | 6 | B.1.509 | 0.005195 |
ORF8 | 2 | K2S | AAa | TCa | 3 | 6 | B.1.625 | 0.007059 |
ORF8 | 2 | K2S | AAA | TCT | 3 | 6 | B.1.625 | 0.007059 |
ORF8 | 2 | K2del | AAA | --- | 6 | 6 | P.1 | 0.000095 |
ORF8 | 2 | K2E | Aaa | Gaa | 6 | 6 | P.1 | 0.000095 |
ORF8 | 2 | K2Q | Aaa | Caa | 6 | 6 | P.5 | 0.082192 |
ORF8 | 2 | K2H | AaA | CaT | 3 | 5 | All | 0.000001 |
ORF8 | 2 | K2Y | AaA | TaT | 3 | 5 | All | 0.000001 |
ORF8 | 2 | K2H | AaA | CaC | 2 | 5 | All | 0 |
ORF8 | 2 | K2Y | AaA | TaC | 2 | 5 | All | 0 |
ORF8 | 2 | K2del | AAA | --- | 5 | 5 | AY.3.1 | 0.000426 |
ORF8 | 2 | K2E | Aaa | Gaa | 5 | 5 | AY.42 | 0.000201 |
ORF8 | 2 | K2del | AAA | --- | 5 | 5 | AY.44 | 0.00003 |
ORF8 | 2 | K2S | AAa | TCa | 5 | 5 | B.1.1.318 | 0.001509 |
ORF8 | 2 | K2del | AAA | --- | 5 | 5 | B.1.1.519 | 0.000199 |
ORF8 | 2 | K2K | aaA | aaG | 5 | 5 | B.1.617.2 | 0.000019 |
ORF8 | 2 | K2N | aaA | aaC | 5 | 5 | Q.4 | 0.002274 |
ORF8 | 2 | K2N | aaA | aaC | 2 | 4 | 0.111111 | |
ORF8 | 2 | K2Y | AaA | TaT | 2 | 4 | 0.111111 | |
ORF8 | 2 | K2Y | AaA | TaC | 2 | 4 | 0.111111 | |
ORF8 | 2 | K2H | AaA | CaT | 2 | 4 | 0.111111 | |
ORF8 | 2 | K2H | AaA | CaC | 2 | 4 | 0.111111 | |
ORF8 | 2 | K2N | aaA | aaT | 2 | 4 | 0.111111 | |
ORF8 | 2 | K2del | AAA | --- | 4 | 4 | AT.1 | 0.020513 |
ORF8 | 2 | K2E | Aaa | Gaa | 4 | 4 | AY.3 | 0.00004 |
ORF8 | 2 | K2R | aAa | aGa | 4 | 4 | B.1.1.7 | 0.000004 |
ORF8 | 2 | K2del | AAA | --- | 4 | 4 | B.1.128 | 0.002541 |
ORF8 | 2 | K2R | aAa | aGa | 4 | 4 | B.1.177.57 | 0.001124 |
ORF8 | 2 | K2K | aaA | aaG | 4 | 4 | B.1.177.82 | 0.001909 |
ORF8 | 2 | K2K | aaA | aaG | 4 | 4 | B.1.337 | 0.022346 |
ORF8 | 2 | K2del | AAA | --- | 4 | 4 | B.1.526 | 0.000094 |
ORF8 | 2 | K2N | aaA | aaT | 3 | 3 | A.1 | 0.000846 |
ORF8 | 2 | K2K | aaA | aaG | 3 | 3 | A.21 | 0.00831 |
ORF8 | 2 | K2V | AAA | GTG | 2 | 3 | All | 0 |
ORF8 | 2 | K2V | AAa | GTa | 1 | 3 | All | 0 |
ORF8 | 2 | K2E | Aaa | Gaa | 3 | 3 | AY.100 | 0.000138 |
ORF8 | 2 | K2N | aaA | aaC | 3 | 3 | AY.103 | 0.000019 |
ORF8 | 2 | K2del | AAA | --- | 3 | 3 | AY.103 | 0.000019 |
ORF8 | 2 | K2del | AAA | --- | 3 | 3 | AY.37 | 0.000948 |
ORF8 | 2 | K2T | aAa | aCa | 3 | 3 | AY.4 | 0.000005 |
ORF8 | 2 | K2del | AAA | --- | 3 | 3 | AY.48 | 0.001395 |
ORF8 | 2 | K2I | aAa | aTa | 3 | 3 | B | 0.000383 |
ORF8 | 2 | K2K | aaA | aaG | 3 | 3 | B.1 | 0.000027 |
ORF8 | 2 | K2I | aAa | aTa | 3 | 3 | B.1.1 | 0.000054 |
ORF8 | 2 | K2del | AAA | --- | 3 | 3 | B.1.1.507 | 0.026087 |
ORF8 | 2 | K2del2 | aAA | a-- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF8 | 2 | K2del | AAA | --- | 3 | 3 | B.1.126 | 0.003827 |
ORF8 | 2 | K2K | aaA | aaG | 3 | 3 | B.1.177.81 | 0.000568 |
ORF8 | 2 | K2T | aAA | aCG | 2 | 3 | B.1.2 | 0.000018 |
ORF8 | 2 | K2T | aAa | aCa | 1 | 3 | B.1.2 | 0.000009 |
ORF8 | 2 | K2R | AAa | CGa | 2 | 3 | B.1.36 | 0.000292 |
ORF8 | 2 | K2R | aAa | aGa | 1 | 3 | B.1.36 | 0.000146 |
ORF8 | 2 | K2X | Aaa | Taa | 3 | 3 | B.1.617.2 | 0.000011 |
ORF8 | 2 | K2N | aaA | aaC | 2 | 3 | P.1 | 0.000032 |
ORF8 | 2 | K2N | aaA | aaT | 1 | 3 | P.1 | 0.000016 |
ORF8 | 2 | K2del | AAA | --- | 3 | 3 | P.1.15 | 0.000697 |
ORF8 | 2 | K2A | AAA | GCG | 2 | 2 | 0.111111 | |
ORF8 | 2 | K2L | AAA | CTG | 2 | 2 | 0.111111 | |
ORF8 | 2 | K2V | AAA | GTG | 2 | 2 | 0.111111 | |
ORF8 | 2 | K2X | Aaa | Taa | 2 | 2 | 0.111111 | |
ORF8 | 2 | K2P | AAA | CCG | 2 | 2 | 0.111111 | |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | 0.111111 | |
ORF8 | 2 | K2Q | Aaa | Caa | 2 | 2 | 0.111111 | |
ORF8 | 2 | K2E | Aaa | Gaa | 2 | 2 | 0.111111 | |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | A.2.2 | 0.003378 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | AD.2 | 0.000438 |
ORF8 | 2 | K2F | AAA | TTT | 2 | 2 | All | 0 |
ORF8 | 2 | K2A | AAA | GCG | 2 | 2 | All | 0 |
ORF8 | 2 | K2P | AAA | CCG | 2 | 2 | All | 0 |
ORF8 | 2 | K2K | aaA | aaG | 2 | 2 | AY.102 | 0.000053 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | AY.118 | 0.000125 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | AY.13 | 0.000322 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | AY.25 | 0.000012 |
ORF8 | 2 | K2del1 | aaA | aa- | 2 | 2 | AY.26 | 0.000057 |
ORF8 | 2 | K2N | aaA | aaC | 1 | 2 | AY.3 | 0.00001 |
ORF8 | 2 | K2I | aAa | aTa | 1 | 2 | AY.3 | 0.00001 |
ORF8 | 2 | K2I | aAA | aTT | 1 | 2 | AY.3 | 0.00001 |
ORF8 | 2 | K2N | aaA | aaT | 1 | 2 | AY.3 | 0.00001 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | AY.39 | 0.000049 |
ORF8 | 2 | K2N | aaA | aaT | 2 | 2 | AY.4 | 0.000003 |
ORF8 | 2 | K2X | Aaa | Taa | 2 | 2 | AY.4 | 0.000003 |
ORF8 | 2 | K2R | aAa | aGa | 2 | 2 | AY.4 | 0.000003 |
ORF8 | 2 | K2E | Aaa | Gaa | 2 | 2 | AY.4 | 0.000003 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | AY.4.2 | 0.000043 |
ORF8 | 2 | K2T | aAa | aCa | 2 | 2 | AY.43 | 0.000009 |
ORF8 | 2 | K2E | Aaa | Gaa | 2 | 2 | AY.43 | 0.000009 |
ORF8 | 2 | K2N | aaA | aaC | 2 | 2 | AY.43 | 0.000009 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | AY.43 | 0.000009 |
ORF8 | 2 | K2E | Aaa | Gaa | 2 | 2 | AY.44 | 0.000012 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | AY.47 | 0.000062 |
ORF8 | 2 | K2E | Aaa | Gaa | 2 | 2 | AY.73 | 0.001331 |
ORF8 | 2 | K2N | aaA | aaC | 2 | 2 | AY.87 | 0.001665 |
ORF8 | 2 | K2I | aAa | aTa | 2 | 2 | AY.99.2 | 0.000184 |
ORF8 | 2 | K2E | Aaa | Gaa | 2 | 2 | B | 0.000256 |
ORF8 | 2 | K2T | aAa | aCa | 2 | 2 | B.1 | 0.000018 |
ORF8 | 2 | K2N | aaA | aaT | 2 | 2 | B.1.1 | 0.000036 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | B.1.1.214 | 0.000111 |
ORF8 | 2 | K2X | Aaa | Taa | 2 | 2 | B.1.1.25 | 0.001137 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | B.1.1.306 | 0.000877 |
ORF8 | 2 | K2Q | Aaa | Caa | 2 | 2 | B.1.1.524 | 0.041667 |
ORF8 | 2 | K2I | aAa | aTa | 2 | 2 | B.1.1.7 | 0.000002 |
ORF8 | 2 | K2E | Aaa | Gaa | 2 | 2 | B.1.1.70 | 0.000682 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | B.1.157 | 0.00597 |
ORF8 | 2 | K2Q | Aaa | Caa | 2 | 2 | B.1.177 | 0.000026 |
ORF8 | 2 | K2X | Aaa | Taa | 2 | 2 | B.1.177 | 0.000026 |
ORF8 | 2 | K2E | Aaa | Gaa | 2 | 2 | B.1.177 | 0.000026 |
ORF8 | 2 | K2R | aAa | aGa | 2 | 2 | B.1.2 | 0.000018 |
ORF8 | 2 | K2K | aaA | aaG | 2 | 2 | B.1.2 | 0.000018 |
ORF8 | 2 | K2K | aaA | aaG | 2 | 2 | B.1.237 | 0.00995 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF8 | 2 | K2X | Aaa | Taa | 2 | 2 | B.1.258.17 | 0.000208 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | B.1.568 | 0.002222 |
ORF8 | 2 | K2K | aaA | aaG | 2 | 2 | B.1.596 | 0.000174 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF8 | 2 | K2R | aAa | aGa | 2 | 2 | B.1.637 | 0.000146 |
ORF8 | 2 | K2K | aaA | aaG | 2 | 2 | P.1 | 0.000032 |
ORF8 | 2 | K2T | aAa | aCa | 2 | 2 | P.1 | 0.000032 |
ORF8 | 2 | K2S | AAa | TCa | 2 | 2 | P.1 | 0.000032 |
ORF8 | 2 | K2L | AAa | CTa | 2 | 2 | P.1 | 0.000032 |
ORF8 | 2 | K2I | aAa | aTa | 2 | 2 | P.1 | 0.000032 |
ORF8 | 2 | K2del | AAA | --- | 2 | 2 | P.1.12 | 0.000968 |
ORF8 | 2 | K2N | aaA | aaT | 1 | 1 | A.2.4 | 0.003367 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | A.2.5 | 0.000499 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | A.23 | 0.010526 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF8 | 2 | K2G | AAa | GGa | 1 | 1 | All | 0 |
ORF8 | 2 | K2C | AAA | TGT | 1 | 1 | All | 0 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | AY.100 | 0.000046 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | AY.100 | 0.000046 |
ORF8 | 2 | K2T | aAa | aCa | 1 | 1 | AY.102 | 0.000027 |
ORF8 | 2 | K2del1 | Aaa | -aa | 1 | 1 | AY.103 | 0.000006 |
ORF8 | 2 | K2X | Aaa | Taa | 1 | 1 | AY.103 | 0.000006 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | AY.103 | 0.000006 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | AY.107 | 0.000466 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | AY.108 | 0.001103 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | AY.119 | 0.000035 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | AY.120 | 0.000037 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | AY.20 | 0.000039 |
ORF8 | 2 | K2I | aAa | aTa | 1 | 1 | AY.25 | 0.000006 |
ORF8 | 2 | K2N | aaA | aaT | 1 | 1 | AY.25 | 0.000006 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | AY.26 | 0.000028 |
ORF8 | 2 | K2Y | AaA | TaT | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 2 | K2L | AAa | TTa | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 2 | K2F | AAA | TTT | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 2 | K2X | Aaa | Taa | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | AY.36 | 0.000148 |
ORF8 | 2 | K2del2 | aAA | a-- | 1 | 1 | AY.4 | 0.000002 |
ORF8 | 2 | K2I | aAa | aTa | 1 | 1 | AY.4 | 0.000002 |
ORF8 | 2 | K2del1 | aaA | aa- | 1 | 1 | AY.4 | 0.000002 |
ORF8 | 2 | K2T | aAa | aCa | 1 | 1 | AY.4.2 | 0.000022 |
ORF8 | 2 | K2X | Aaa | Taa | 1 | 1 | AY.4.5 | 0.000107 |
ORF8 | 2 | K2R | aAa | aGa | 1 | 1 | AY.4.5 | 0.000107 |
ORF8 | 2 | K2C | AAA | TGT | 1 | 1 | AY.43 | 0.000004 |
ORF8 | 2 | K2F | AAA | TTT | 1 | 1 | AY.43 | 0.000004 |
ORF8 | 2 | K2L | AAa | CTa | 1 | 1 | AY.43 | 0.000004 |
ORF8 | 2 | K2R | aAa | aGa | 1 | 1 | AY.43 | 0.000004 |
ORF8 | 2 | K2N | aaA | aaT | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 2 | K2I | aAa | aTa | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | AY.55 | 0.000917 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | AY.57 | 0.000656 |
ORF8 | 2 | K2L | AAa | CTa | 1 | 1 | AY.58 | 0.000907 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | AY.67 | 0.000464 |
ORF8 | 2 | K2N | aaA | aaC | 1 | 1 | AY.74 | 0.000116 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | AY.74 | 0.000116 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF8 | 2 | K2H | AaA | CaT | 1 | 1 | AY.84 | 0.000437 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | AY.9.1 | 0.000084 |
ORF8 | 2 | K2E | Aaa | Gaa | 1 | 1 | AY.98.1 | 0.000048 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | AY.99 | 0.001049 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF8 | 2 | K2del1 | Aaa | -aa | 1 | 1 | B | 0.000128 |
ORF8 | 2 | K2I | aAa | aTa | 1 | 1 | B.1 | 0.000009 |
ORF8 | 2 | K2N | aaA | aaT | 1 | 1 | B.1 | 0.000009 |
ORF8 | 2 | K2X | Aaa | Taa | 1 | 1 | B.1 | 0.000009 |
ORF8 | 2 | K2R | aAa | aGa | 1 | 1 | B.1 | 0.000009 |
ORF8 | 2 | K2Q | Aaa | Caa | 1 | 1 | B.1.1 | 0.000018 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | B.1.1 | 0.000018 |
ORF8 | 2 | K2R | aAa | aGa | 1 | 1 | B.1.1 | 0.000018 |
ORF8 | 2 | K2X | Aaa | Taa | 1 | 1 | B.1.1 | 0.000018 |
ORF8 | 2 | K2N | aaA | aaC | 1 | 1 | B.1.1.10 | 0.001115 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF8 | 2 | K2N | aaA | aaT | 1 | 1 | B.1.1.222 | 0.000204 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | B.1.1.241 | 0.00207 |
ORF8 | 2 | K2Q | Aaa | Caa | 1 | 1 | B.1.1.28 | 0.000311 |
ORF8 | 2 | K2N | aaA | aaC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF8 | 2 | K2E | Aaa | Gaa | 1 | 1 | B.1.1.282 | 0.011628 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF8 | 2 | K2N | aaA | aaT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | B.1.1.291 | 0.000742 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | B.1.1.303 | 0.002762 |
ORF8 | 2 | K2del2 | AAa | --a | 1 | 1 | B.1.1.318 | 0.000302 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.1.354 | 0.004386 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.1.37 | 0.000193 |
ORF8 | 2 | K2N | aaA | aaC | 1 | 1 | B.1.1.398 | 0.003226 |
ORF8 | 2 | K2N | aaA | aaT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.1.44 | 0.00241 |
ORF8 | 2 | K2del2 | AAa | --a | 1 | 1 | B.1.1.525 | 0.005464 |
ORF8 | 2 | K2T | aAa | aCa | 1 | 1 | B.1.1.528 | 0.004808 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF8 | 2 | K2del1 | Aaa | -aa | 1 | 1 | B.1.126 | 0.001276 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | B.1.143 | 0.021277 |
ORF8 | 2 | K2E | Aaa | Gaa | 1 | 1 | B.1.147 | 0.000756 |
ORF8 | 2 | K2X | Aaa | Taa | 1 | 1 | B.1.160 | 0.000031 |
ORF8 | 2 | K2N | aaA | aaT | 1 | 1 | B.1.160 | 0.000031 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF8 | 2 | K2X | Aaa | Taa | 1 | 1 | B.1.160.19 | 0.035714 |
ORF8 | 2 | K2R | aAa | aGa | 1 | 1 | B.1.160.29 | 0.004219 |
ORF8 | 2 | K2Q | Aaa | Caa | 1 | 1 | B.1.170 | 0.00431 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF8 | 2 | K2R | aAa | aGa | 1 | 1 | B.1.177 | 0.000013 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | B.1.177 | 0.000013 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.177.50 | 0.004695 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.177.63 | 0.002703 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.195 | 0.005025 |
ORF8 | 2 | K2E | Aaa | Gaa | 1 | 1 | B.1.2 | 0.000009 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.214.2 | 0.0006 |
ORF8 | 2 | K2N | aaA | aaT | 1 | 1 | B.1.240 | 0.000216 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | B.1.258 | 0.000067 |
ORF8 | 2 | K2T | aAa | aCa | 1 | 1 | B.1.258 | 0.000067 |
ORF8 | 2 | K2E | Aaa | Gaa | 1 | 1 | B.1.258.11 | 0.000396 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 2 | K2I | aAa | aTa | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 2 | K2E | Aaa | Gaa | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 2 | K2Q | Aaa | Caa | 1 | 1 | B.1.36 | 0.000146 |
ORF8 | 2 | K2N | aaA | aaC | 1 | 1 | B.1.36 | 0.000146 |
ORF8 | 2 | K2I | aAa | aTa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF8 | 2 | K2X | Aaa | Taa | 1 | 1 | B.1.36.29 | 0.000517 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF8 | 2 | K2N | aaA | aaC | 1 | 1 | B.1.36.8 | 0.001 |
ORF8 | 2 | K2R | aAa | aGa | 1 | 1 | B.1.361 | 0.001289 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | B.1.367 | 0.000792 |
ORF8 | 2 | K2R | aAa | aGa | 1 | 1 | B.1.367 | 0.000792 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | B.1.369 | 0.000285 |
ORF8 | 2 | K2Q | Aaa | Caa | 1 | 1 | B.1.396 | 0.000706 |
ORF8 | 2 | K2R | aAa | aGa | 1 | 1 | B.1.404 | 0.001302 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF8 | 2 | K2R | aAa | aGa | 1 | 1 | B.1.427 | 0.00005 |
ORF8 | 2 | K2E | Aaa | Gaa | 1 | 1 | B.1.427 | 0.00005 |
ORF8 | 2 | K2E | Aaa | Gaa | 1 | 1 | B.1.429 | 0.000024 |
ORF8 | 2 | K2N | aaA | aaC | 1 | 1 | B.1.456 | 0.003268 |
ORF8 | 2 | K2R | AAa | CGa | 1 | 1 | B.1.468 | 0.005714 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.470 | 0.001404 |
ORF8 | 2 | K2I | aAa | aTa | 1 | 1 | B.1.520 | 0.021739 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | B.1.524 | 0.001406 |
ORF8 | 2 | K2del2 | aAA | a-- | 1 | 1 | B.1.525 | 0.000113 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | B.1.527 | 0.003704 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.576 | 0.000907 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.582 | 0.000491 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | B.1.617.1 | 0.000129 |
ORF8 | 2 | K2E | Aaa | Gaa | 1 | 1 | B.1.619.1 | 0.000641 |
ORF8 | 2 | K2T | aAa | aCa | 1 | 1 | B.1.620 | 0.000946 |
ORF8 | 2 | K2I | aAa | aTa | 1 | 1 | B.1.626 | 0.005714 |
ORF8 | 2 | K2N | aaA | aaT | 1 | 1 | B.1.628 | 0.000352 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | B.1.637 | 0.000073 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | B.23 | 0.002924 |
ORF8 | 2 | K2T | aAa | aCa | 1 | 1 | B.23 | 0.002924 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | C.26 | 0.007353 |
ORF8 | 2 | K2R | aAa | aGa | 1 | 1 | C.36.3 | 0.000567 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | C.37 | 0.000116 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | C.37 | 0.000116 |
ORF8 | 2 | K2T | aAa | aCa | 1 | 1 | C.37 | 0.000116 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | C.4 | 0.01 |
ORF8 | 2 | K2T | aAa | aCa | 1 | 1 | D.2 | 0.000075 |
ORF8 | 2 | K2E | Aaa | Gaa | 1 | 1 | D.2 | 0.000075 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | N.6 | 0.007092 |
ORF8 | 2 | K2N | aaA | aaC | 1 | 1 | P.1.12 | 0.000484 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 2 | K2G | AAa | GGa | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 2 | K2I | aAa | aTa | 1 | 1 | P.1.2 | 0.001156 |
ORF8 | 2 | K2E | Aaa | Gaa | 1 | 1 | P.1.2 | 0.001156 |
ORF8 | 2 | K2V | AAa | GTa | 1 | 1 | P.1.2 | 0.001156 |
ORF8 | 2 | K2K | aaA | aaG | 1 | 1 | Q.3 | 0.000145 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | Q.8 | 0.000165 |
ORF8 | 2 | K2del | AAA | --- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|