CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 17 | H17Y | nonsyn | Cac | Tac | 7566 | 7525 | 0.994581 | 27942-27944 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 17 | H17Y | Cac | Tac | 7525 | 7566 | All | 0.001439 |
ORF8 | 17 | H17Y | Cac | Tac | 4600 | 4600 | B.1.2 | 0.040505 |
ORF8 | 17 | H17Y | Cac | Tac | 801 | 801 | B.1.160 | 0.024981 |
ORF8 | 17 | H17Y | Cac | Tac | 670 | 670 | B.1.1.7 | 0.0006 |
ORF8 | 17 | H17Y | Cac | Tac | 137 | 137 | B.1.160.9 | 0.985612 |
ORF8 | 17 | H17Y | Cac | Tac | 89 | 89 | AY.4 | 0.000139 |
ORF8 | 17 | H17Y | Cac | Tac | 86 | 87 | B.1 | 0.000788 |
ORF8 | 17 | H17Y | Cac | Tac | 77 | 77 | AY.103 | 0.000478 |
ORF8 | 17 | H17Y | Cac | Tac | 74 | 74 | B.1.596 | 0.006448 |
ORF8 | 17 | H17Y | Cac | Tac | 68 | 68 | AY.44 | 0.000414 |
ORF8 | 17 | H17Y | Cac | Tac | 64 | 64 | B.1.617.2 | 0.000241 |
ORF8 | 17 | H17Y | Cac | Tac | 58 | 58 | AY.9 | 0.003921 |
ORF8 | 17 | H17Y | Cac | Tac | 46 | 46 | AY.25 | 0.000277 |
ORF8 | 17 | H17Y | Cac | Tac | 40 | 40 | AY.5 | 0.000826 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 36 | B.1.177 | 0.000053 |
ORF8 | 17 | H17Y | Cac | Tac | 29 | 29 | P.1.3 | 1 |
ORF8 | 17 | H17Y | Cac | Tac | 26 | 26 | AY.43 | 0.000115 |
ORF8 | 17 | H17Y | Cac | Tac | 26 | 26 | B.1.258.17 | 0.002703 |
ORF8 | 17 | H17Y | Cac | Tac | 22 | 25 | AY.102 | 0.000583 |
ORF8 | 17 | H17Y | Cac | Tac | 25 | 25 | B.1.351 | 0.000743 |
ORF8 | 17 | H17Y | Cac | Tac | 24 | 24 | B.1.1.333 | 0.025834 |
ORF8 | 17 | H17Y | Cac | Tac | 23 | 23 | B.1.1 | 0.000417 |
ORF8 | 17 | H17Y | Cac | Tac | 19 | 19 | AY.29 | 0.0003 |
ORF8 | 17 | H17Y | Cac | Tac | 19 | 19 | C.37 | 0.002205 |
ORF8 | 17 | H17Y | Cac | Tac | 18 | 18 | AY.26 | 0.00051 |
ORF8 | 17 | H17Y | Cac | Tac | 17 | 17 | B.1.429 | 0.0004 |
ORF8 | 17 | H17Y | Cac | Tac | 16 | 16 | AY.3 | 0.000159 |
ORF8 | 17 | H17Y | Cac | Tac | 16 | 16 | B.1.243 | 0.001113 |
ORF8 | 17 | H17Y | Cac | Tac | 16 | 16 | P.1 | 0.000252 |
ORF8 | 17 | H17Y | Cac | Tac | 14 | 14 | AY.59 | 0.007415 |
ORF8 | 17 | H17Y | Cac | Tac | 14 | 14 | Q.8 | 0.002309 |
ORF8 | 17 | H17Y | Cac | Tac | 13 | 13 | AY.119 | 0.000459 |
ORF8 | 17 | H17Y | Cac | Tac | 12 | 12 | AY.27 | 0.000777 |
ORF8 | 17 | H17Y | Cac | Tac | 12 | 12 | Q.1 | 0.001516 |
ORF8 | 17 | H17Y | Cac | Tac | 11 | 11 | AY.9.2 | 0.000404 |
ORF8 | 17 | H17Y | Cac | Tac | 10 | 10 | AY.23 | 0.000697 |
ORF8 | 17 | H17Y | Cac | Tac | 9 | 9 | AY.33 | 0.000601 |
ORF8 | 17 | H17Y | Cac | Tac | 8 | 8 | AY.61 | 0.000838 |
ORF8 | 17 | H17Y | Cac | Tac | 8 | 8 | B.1.1.294 | 0.010127 |
ORF8 | 17 | H17Y | Cac | Tac | 8 | 8 | P.1.14 | 0.000382 |
ORF8 | 17 | H17Y | Cac | Tac | 8 | 8 | P.2 | 0.001493 |
ORF8 | 17 | H17Y | Cac | Tac | 7 | 7 | AY.100 | 0.000322 |
ORF8 | 17 | H17Y | Cac | Tac | 7 | 7 | AY.98.1 | 0.000339 |
ORF8 | 17 | H17Y | Cac | Tac | 6 | 6 | AY.20 | 0.000233 |
ORF8 | 17 | H17Y | Cac | Tac | 6 | 6 | B | 0.000767 |
ORF8 | 17 | H17Y | Cac | Tac | 6 | 6 | B.1.1.170 | 0.007481 |
ORF8 | 17 | H17Y | Cac | Tac | 6 | 6 | B.1.1.222 | 0.001224 |
ORF8 | 17 | H17Y | Cac | Tac | 6 | 6 | B.1.427 | 0.000303 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | AY.120 | 0.000186 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | AY.29.1 | 0.001103 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | AY.9.1 | 0.000419 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | B.1.1.358 | 0.172414 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | B.1.1.433 | 0.007123 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | B.1.221 | 0.000355 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 5 | B.1.258 | 0.000266 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | B.1.36 | 0.00073 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | B.1.526 | 0.000118 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | D.2 | 0.000375 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 4 | 0.166667 | |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 4 | AY.121 | 0.000541 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 4 | AY.34 | 0.000388 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 4 | AY.39 | 0.000099 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 4 | B.1.1.1 | 0.001307 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 4 | B.1.1.326 | 0.007042 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 4 | B.1.36.31 | 0.007005 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 4 | B.1.595 | 0.001044 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.118 | 0.000188 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.14 | 0.000264 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.16 | 0.001139 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.24 | 0.001293 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.4.2 | 0.000065 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.42 | 0.000121 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.45 | 0.000365 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.46 | 0.000312 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.51 | 0.002727 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.79 | 0.003632 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.92 | 0.000862 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | B.1.1.519 | 0.000119 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | B.1.637 | 0.000219 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | K.3 | 0.018519 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | A.27 | 0.003311 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.10 | 0.00106 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.106 | 0.00067 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.117 | 0.000169 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.120.1 | 0.000642 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.2 | 0.000712 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.23.1 | 0.000835 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.47 | 0.000062 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.54 | 0.000191 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.6 | 0.000082 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.69 | 0.000373 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.99.2 | 0.000184 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.1.236 | 0.013793 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.1.280 | 0.006173 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.1.284 | 0.000215 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.1.33 | 0.000842 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.1.466 | 0.017391 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.128 | 0.001271 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.160.16 | 0.001859 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.179 | 0.007519 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.240 | 0.000431 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.36.29 | 0.001035 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.36.38 | 0.003284 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.369 | 0.00057 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.497 | 0.00063 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.568 | 0.002222 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.610 | 0.007092 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.621.1 | 0.001012 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | C.16 | 0.002121 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | C.36.3 | 0.001134 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | A | 0.000387 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | A.12 | 0.166667 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | A.21 | 0.00277 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AM.2 | 0.111111 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.108 | 0.001103 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.113 | 0.000142 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.116 | 0.000287 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.116.1 | 0.000311 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.12 | 0.000316 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.4.3 | 0.000842 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.4.4 | 0.000409 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.4.5 | 0.000107 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.41 | 0.000294 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.46.4 | 0.000165 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.5.4 | 0.000277 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.53 | 0.000288 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.55 | 0.000917 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.57 | 0.000656 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.70 | 0.000209 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.75.1 | 0.00018 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.84 | 0.000437 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.89 | 0.004902 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AZ.1 | 0.000867 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.121 | 0.002427 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.214 | 0.000055 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.25 | 0.000569 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.28 | 0.000311 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.305 | 0.003861 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.312 | 0.001912 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.317 | 0.000412 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.39 | 0.00051 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.507 | 0.008696 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.523 | 0.001563 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.70 | 0.000341 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.104 | 0.00369 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.111 | 0.001175 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.113 | 0.015625 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.160.28 | 0.002924 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.234 | 0.000132 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.258.11 | 0.000396 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.346 | 0.001311 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.349 | 0.000715 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.351.3 | 0.000876 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.36.8 | 0.001 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.396 | 0.000706 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.400 | 0.000429 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.409 | 0.000781 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.466.2 | 0.000391 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.498 | 0.020408 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.525 | 0.000113 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.551 | 0.00129 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.621 | 0.000089 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.3 | 0.000831 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.40 | 0.000364 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | N.3 | 0.005814 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | N.5 | 0.001767 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | P.1.10 | 0.000269 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | P.1.4 | 0.000977 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | P.1.6 | 0.001946 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | Q.3 | 0.000145 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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