CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 17 | H17H | syn | caC | caT | 114060 | 114060 | 1 | 27942-27944 | |
ORF8 | 17 | H17Y | nonsyn | Cac | Tac | 7566 | 7525 | 0.994581 | 27942-27944 | |
ORF8 | 17 | H17Y | nonsyn | CaC | TaT | 7566 | 41 | 0.00541898 | 27942-27944 | |
ORF8 | 17 | H17del | del | CAC | --- | 1966 | 1966 | 1 | 27942-27944 | |
ORF8 | 17 | H17Q | nonsyn | caC | caA | 187 | 158 | 0.84492 | 27942-27944 | |
ORF8 | 17 | H17Q | nonsyn | caC | caG | 187 | 29 | 0.15508 | 27942-27944 | |
ORF8 | 17 | H17R | nonsyn | cAc | cGc | 105 | 100 | 0.952381 | 27942-27944 | |
ORF8 | 17 | H17R | nonsyn | cAC | cGG | 105 | 4 | 0.0380952 | 27942-27944 | |
ORF8 | 17 | H17R | nonsyn | cAC | cGT | 105 | 1 | 0.00952381 | 27942-27944 | |
ORF8 | 17 | H17del1 | del | Cac | -ac | 80 | 64 | 0.8 | 27942-27944 | |
ORF8 | 17 | H17del1 | del | CaC | -aT | 80 | 12 | 0.15 | 27942-27944 | |
ORF8 | 17 | H17del1 | del | caC | ca- | 80 | 3 | 0.0375 | 27942-27944 | |
ORF8 | 17 | H17del1 | del | CAC | -NN | 80 | 1 | 0.0125 | 27942-27944 | |
ORF8 | 17 | H17D | nonsyn | Cac | Gac | 40 | 40 | 1 | 27942-27944 | |
ORF8 | 17 | H17L | nonsyn | cAc | cTc | 38 | 34 | 0.894737 | 27942-27944 | |
ORF8 | 17 | H17L | nonsyn | cAC | cTT | 38 | 4 | 0.105263 | 27942-27944 | |
ORF8 | 17 | H17N | nonsyn | Cac | Aac | 37 | 36 | 0.972973 | 27942-27944 | |
ORF8 | 17 | H17N | nonsyn | CaC | AaT | 37 | 1 | 0.027027 | 27942-27944 | |
ORF8 | 17 | H17F | nonsyn | CAc | TTc | 8 | 4 | 0.5 | 27942-27944 | |
ORF8 | 17 | H17F | nonsyn | CAC | TTT | 8 | 4 | 0.5 | 27942-27944 | |
ORF8 | 17 | H17S | nonsyn | CAc | TCc | 6 | 3 | 0.5 | 27942-27944 | |
ORF8 | 17 | H17S | nonsyn | CAc | AGc | 6 | 2 | 0.333333 | 27942-27944 | |
ORF8 | 17 | H17S | nonsyn | CAC | TCT | 6 | 1 | 0.166667 | 27942-27944 | |
ORF8 | 17 | H17P | nonsyn | cAc | cCc | 5 | 4 | 0.8 | 27942-27944 | |
ORF8 | 17 | H17P | nonsyn | cAC | cCT | 5 | 1 | 0.2 | 27942-27944 | |
ORF8 | 17 | H17G | nonsyn | CAc | GGc | 2 | 2 | 1 | 27942-27944 | |
ORF8 | 17 | H17V | nonsyn | CAc | GTc | 2 | 2 | 1 | 27942-27944 | |
ORF8 | 17 | H17C | nonsyn | CAc | TGc | 2 | 2 | 1 | 27942-27944 | |
ORF8 | 17 | H17I | nonsyn | CAc | ATc | 2 | 2 | 1 | 27942-27944 | |
ORF8 | 17 | H17X | nonsyn | CaC | TaG | 1 | 1 | 1 | 27942-27944 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 17 | H17H | caC | caT | 114060 | 114060 | All | 0.021815 |
ORF8 | 17 | H17H | caC | caT | 47384 | 47384 | B.1.177 | 0.623933 |
ORF8 | 17 | H17H | caC | caT | 12982 | 12982 | B.1.177.21 | 0.992735 |
ORF8 | 17 | H17Y | Cac | Tac | 7525 | 7566 | All | 0.001439 |
ORF8 | 17 | H17Y | CaC | TaT | 41 | 7566 | All | 0.000008 |
ORF8 | 17 | H17H | caC | caT | 5931 | 5931 | B.1.177.7 | 0.977745 |
ORF8 | 17 | H17H | caC | caT | 5404 | 5404 | B.1.177.86 | 0.991378 |
ORF8 | 17 | H17H | caC | caT | 5235 | 5235 | B.1.177.81 | 0.991102 |
ORF8 | 17 | H17H | caC | caT | 4653 | 4653 | B.1.177.4 | 0.98206 |
ORF8 | 17 | H17Y | Cac | Tac | 4600 | 4600 | B.1.2 | 0.040505 |
ORF8 | 17 | H17H | caC | caT | 4577 | 4577 | B.1.177.60 | 0.999782 |
ORF8 | 17 | H17H | caC | caT | 3503 | 3503 | B.1.177.57 | 0.984265 |
ORF8 | 17 | H17del | CAC | --- | 1966 | 1966 | All | 0.000376 |
ORF8 | 17 | H17H | caC | caT | 1634 | 1634 | B.1.177.54 | 0.990904 |
ORF8 | 17 | H17H | caC | caT | 1489 | 1489 | B.1.177.65 | 0.990685 |
ORF8 | 17 | H17H | caC | caT | 1482 | 1482 | B.1.177.56 | 0.989319 |
ORF8 | 17 | H17H | caC | caT | 1366 | 1366 | B.1.177.77 | 0.992012 |
ORF8 | 17 | H17H | caC | caT | 1321 | 1321 | B.1.177.8 | 0.99398 |
ORF8 | 17 | H17del | CAC | --- | 1308 | 1308 | B.1.623 | 0.701717 |
ORF8 | 17 | H17H | caC | caT | 1007 | 1007 | B.1.1.7 | 0.000901 |
ORF8 | 17 | H17H | caC | caT | 983 | 983 | B.1.177.6 | 0.959961 |
ORF8 | 17 | H17H | caC | caT | 820 | 820 | B.1.177.62 | 0.977354 |
ORF8 | 17 | H17Y | Cac | Tac | 801 | 801 | B.1.160 | 0.024981 |
ORF8 | 17 | H17H | caC | caT | 792 | 792 | B.1.177.5 | 0.983851 |
ORF8 | 17 | H17H | caC | caT | 770 | 770 | B.1.177.24 | 0.997409 |
ORF8 | 17 | H17H | caC | caT | 736 | 736 | W.4 | 0.994595 |
ORF8 | 17 | H17H | caC | caT | 734 | 734 | B.1.177.58 | 0.977364 |
ORF8 | 17 | H17H | caC | caT | 708 | 708 | B.1 | 0.006485 |
ORF8 | 17 | H17Y | Cac | Tac | 670 | 670 | B.1.1.7 | 0.0006 |
ORF8 | 17 | H17H | caC | caT | 555 | 555 | B.1.177.52 | 0.975395 |
ORF8 | 17 | H17H | caC | caT | 522 | 522 | B.1.177.80 | 0.998088 |
ORF8 | 17 | H17H | caC | caT | 507 | 507 | AY.4 | 0.000789 |
ORF8 | 17 | H17H | caC | caT | 460 | 460 | AY.44 | 0.0028 |
ORF8 | 17 | H17H | caC | caT | 427 | 427 | B.1.177.79 | 1 |
ORF8 | 17 | H17H | caC | caT | 424 | 424 | B.1.177.55 | 0.988345 |
ORF8 | 17 | H17H | caC | caT | 404 | 404 | B.1.177.53 | 0.966507 |
ORF8 | 17 | H17H | caC | caT | 399 | 399 | B.1.177.76 | 0.995012 |
ORF8 | 17 | H17H | caC | caT | 364 | 364 | B.1.177.63 | 0.983784 |
ORF8 | 17 | H17H | caC | caT | 345 | 345 | Z.1 | 0.99711 |
ORF8 | 17 | H17H | caC | caT | 317 | 317 | B.1.177.48 | 0.990625 |
ORF8 | 17 | H17H | caC | caT | 308 | 308 | B.1.2 | 0.002712 |
ORF8 | 17 | H17H | caC | caT | 258 | 258 | U.3 | 0.996139 |
ORF8 | 17 | H17H | caC | caT | 243 | 243 | P.1 | 0.003828 |
ORF8 | 17 | H17H | caC | caT | 219 | 219 | B.1.177.51 | 1 |
ORF8 | 17 | H17H | caC | caT | 217 | 217 | B.1.177.2 | 0.986364 |
ORF8 | 17 | H17H | caC | caT | 209 | 209 | B.1.177.50 | 0.981221 |
ORF8 | 17 | H17H | caC | caT | 207 | 207 | W.2 | 1 |
ORF8 | 17 | H17H | caC | caT | 188 | 188 | W.3 | 0.989474 |
ORF8 | 17 | H17Q | caC | caA | 158 | 187 | All | 0.00003 |
ORF8 | 17 | H17Q | caC | caG | 29 | 187 | All | 0.000006 |
ORF8 | 17 | H17H | caC | caT | 186 | 186 | B.1.617.2 | 0.0007 |
ORF8 | 17 | H17H | caC | caT | 184 | 184 | B.1.177.85 | 1 |
ORF8 | 17 | H17H | caC | caT | 142 | 142 | AY.25 | 0.000854 |
ORF8 | 17 | H17H | caC | caT | 142 | 142 | B.1.177.26 | 0.993007 |
ORF8 | 17 | H17Y | Cac | Tac | 137 | 137 | B.1.160.9 | 0.985612 |
ORF8 | 17 | H17H | caC | caT | 131 | 131 | B.1.177.67 | 1 |
ORF8 | 17 | H17H | caC | caT | 127 | 127 | B.1.177.3 | 0.969466 |
ORF8 | 17 | H17H | caC | caT | 115 | 115 | W.1 | 1 |
ORF8 | 17 | H17H | caC | caT | 113 | 113 | U.2 | 0.991228 |
ORF8 | 17 | H17H | caC | caT | 106 | 106 | B.1.1 | 0.001923 |
ORF8 | 17 | H17R | cAc | cGc | 100 | 105 | All | 0.000019 |
ORF8 | 17 | H17R | cAC | cGG | 4 | 105 | All | 0.000001 |
ORF8 | 17 | H17R | cAC | cGT | 1 | 105 | All | 0 |
ORF8 | 17 | H17H | caC | caT | 105 | 105 | B.1.177.27 | 0.990566 |
ORF8 | 17 | H17H | caC | caT | 99 | 99 | AY.4.2 | 0.002147 |
ORF8 | 17 | H17del | CAC | --- | 99 | 99 | B.1.1.7 | 0.000089 |
ORF8 | 17 | H17H | caC | caT | 94 | 94 | C.37 | 0.01091 |
ORF8 | 17 | H17Y | Cac | Tac | 89 | 89 | AY.4 | 0.000139 |
ORF8 | 17 | H17H | caC | caT | 88 | 88 | B.1.525 | 0.009958 |
ORF8 | 17 | H17Y | Cac | Tac | 86 | 87 | B.1 | 0.000788 |
ORF8 | 17 | H17Y | CaC | TaT | 1 | 87 | B.1 | 0.000009 |
ORF8 | 17 | H17H | caC | caT | 86 | 86 | AY.103 | 0.000534 |
ORF8 | 17 | H17H | caC | caT | 84 | 84 | AY.3 | 0.000835 |
ORF8 | 17 | H17del1 | Cac | -ac | 64 | 80 | All | 0.000012 |
ORF8 | 17 | H17del1 | CaC | -aT | 12 | 80 | All | 0.000002 |
ORF8 | 17 | H17del1 | caC | ca- | 3 | 80 | All | 0.000001 |
ORF8 | 17 | H17del1 | CAC | -NN | 1 | 80 | All | 0 |
ORF8 | 17 | H17H | caC | caT | 78 | 78 | U.1 | 1 |
ORF8 | 17 | H17H | caC | caT | 78 | 78 | Y.1 | 1 |
ORF8 | 17 | H17Y | Cac | Tac | 77 | 77 | AY.103 | 0.000478 |
ORF8 | 17 | H17Y | Cac | Tac | 74 | 74 | B.1.596 | 0.006448 |
ORF8 | 17 | H17H | caC | caT | 72 | 72 | AY.43 | 0.000319 |
ORF8 | 17 | H17del | CAC | --- | 71 | 71 | AY.4 | 0.000111 |
ORF8 | 17 | H17H | caC | caT | 71 | 71 | B.1.177.47 | 0.922078 |
ORF8 | 17 | H17Y | Cac | Tac | 68 | 68 | AY.44 | 0.000414 |
ORF8 | 17 | H17H | caC | caT | 67 | 67 | AY.26 | 0.001897 |
ORF8 | 17 | H17H | caC | caT | 67 | 67 | B.1.177.25 | 1 |
ORF8 | 17 | H17H | caC | caT | 66 | 66 | B.1.177.68 | 1 |
ORF8 | 17 | H17H | caC | caT | 64 | 64 | B.1.177.74 | 0.969697 |
ORF8 | 17 | H17Y | Cac | Tac | 64 | 64 | B.1.617.2 | 0.000241 |
ORF8 | 17 | H17H | caC | caT | 62 | 62 | B.1.177.59 | 1 |
ORF8 | 17 | H17H | caC | caT | 60 | 60 | AY.54 | 0.005721 |
ORF8 | 17 | H17Y | Cac | Tac | 58 | 58 | AY.9 | 0.003921 |
ORF8 | 17 | H17H | caC | caT | 53 | 53 | B.1.258 | 0.003527 |
ORF8 | 17 | H17del | CAC | --- | 47 | 47 | B.1.243 | 0.00327 |
ORF8 | 17 | H17Y | Cac | Tac | 46 | 46 | AY.25 | 0.000277 |
ORF8 | 17 | H17R | cAc | cGc | 46 | 46 | B.1.1.7 | 0.000041 |
ORF8 | 17 | H17H | caC | caT | 44 | 44 | V.1 | 1 |
ORF8 | 17 | H17H | caC | caT | 43 | 43 | B.1.1.141 | 0.086519 |
ORF8 | 17 | H17D | Cac | Gac | 40 | 40 | All | 0.000008 |
ORF8 | 17 | H17H | caC | caT | 40 | 40 | AY.102 | 0.001061 |
ORF8 | 17 | H17Y | Cac | Tac | 40 | 40 | AY.5 | 0.000826 |
ORF8 | 17 | H17del | CAC | --- | 39 | 39 | AY.29 | 0.000615 |
ORF8 | 17 | H17H | caC | caT | 39 | 39 | B.1.1.214 | 0.002163 |
ORF8 | 17 | H17L | cAc | cTc | 34 | 38 | All | 0.000007 |
ORF8 | 17 | H17L | cAC | cTT | 4 | 38 | All | 0.000001 |
ORF8 | 17 | H17H | caC | caT | 38 | 38 | AY.100 | 0.001748 |
ORF8 | 17 | H17Q | caC | caA | 37 | 38 | B.1.1.7 | 0.000033 |
ORF8 | 17 | H17Q | caC | caG | 1 | 38 | B.1.1.7 | 0.000001 |
ORF8 | 17 | H17N | Cac | Aac | 36 | 37 | All | 0.000007 |
ORF8 | 17 | H17N | CaC | AaT | 1 | 37 | All | 0 |
ORF8 | 17 | H17Y | CaC | TaT | 32 | 36 | B.1.177 | 0.000421 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 36 | B.1.177 | 0.000053 |
ORF8 | 17 | H17Q | caC | caA | 19 | 35 | AY.43 | 0.000084 |
ORF8 | 17 | H17Q | caC | caG | 16 | 35 | AY.43 | 0.000071 |
ORF8 | 17 | H17del1 | Cac | -ac | 35 | 35 | AY.63 | 0.01354 |
ORF8 | 17 | H17Q | caC | caA | 35 | 35 | P.1.14 | 0.001673 |
ORF8 | 17 | H17H | caC | caT | 34 | 34 | B.1.429 | 0.0008 |
ORF8 | 17 | H17H | caC | caT | 33 | 33 | AY.118 | 0.002067 |
ORF8 | 17 | H17del | CAC | --- | 33 | 33 | B.1.1.222 | 0.006732 |
ORF8 | 17 | H17H | caC | caT | 31 | 31 | V.2 | 1 |
ORF8 | 17 | H17H | caC | caT | 29 | 29 | B.1.160 | 0.000904 |
ORF8 | 17 | H17Y | Cac | Tac | 29 | 29 | P.1.3 | 1 |
ORF8 | 17 | H17H | caC | caT | 28 | 28 | AY.42 | 0.001126 |
ORF8 | 17 | H17H | caC | caT | 28 | 28 | B.1.526 | 0.000658 |
ORF8 | 17 | H17H | caC | caT | 27 | 27 | B.1.177.49 | 1 |
ORF8 | 17 | H17Y | Cac | Tac | 26 | 26 | AY.43 | 0.000115 |
ORF8 | 17 | H17H | caC | caT | 26 | 26 | AY.75 | 0.001457 |
ORF8 | 17 | H17Y | Cac | Tac | 26 | 26 | B.1.258.17 | 0.002703 |
ORF8 | 17 | H17Y | Cac | Tac | 22 | 25 | AY.102 | 0.000583 |
ORF8 | 17 | H17Y | CaC | TaT | 3 | 25 | AY.102 | 0.00008 |
ORF8 | 17 | H17del | CAC | --- | 25 | 25 | B.1 | 0.000229 |
ORF8 | 17 | H17del | CAC | --- | 25 | 25 | B.1.1 | 0.000454 |
ORF8 | 17 | H17Y | Cac | Tac | 25 | 25 | B.1.351 | 0.000743 |
ORF8 | 17 | H17H | caC | caT | 24 | 24 | B.1.1.222 | 0.004896 |
ORF8 | 17 | H17Y | Cac | Tac | 24 | 24 | B.1.1.333 | 0.025834 |
ORF8 | 17 | H17H | caC | caT | 24 | 24 | B.1.177.66 | 1 |
ORF8 | 17 | H17H | caC | caT | 24 | 24 | P.1.14 | 0.001147 |
ORF8 | 17 | H17Y | Cac | Tac | 23 | 23 | B.1.1 | 0.000417 |
ORF8 | 17 | H17H | caC | caT | 22 | 22 | AY.6 | 0.000905 |
ORF8 | 17 | H17H | caC | caT | 22 | 22 | B.1.177.61 | 0.956522 |
ORF8 | 17 | H17Y | Cac | Tac | 19 | 19 | AY.29 | 0.0003 |
ORF8 | 17 | H17Y | Cac | Tac | 19 | 19 | C.37 | 0.002205 |
ORF8 | 17 | H17Y | Cac | Tac | 18 | 18 | AY.26 | 0.00051 |
ORF8 | 17 | H17H | caC | caT | 18 | 18 | AY.29 | 0.000284 |
ORF8 | 17 | H17H | caC | caT | 18 | 18 | AY.5 | 0.000372 |
ORF8 | 17 | H17Q | caC | caA | 18 | 18 | AY.85 | 0.007689 |
ORF8 | 17 | H17del | CAC | --- | 18 | 18 | B | 0.002301 |
ORF8 | 17 | H17H | caC | caT | 17 | 17 | AY.120.1 | 0.005457 |
ORF8 | 17 | H17Y | Cac | Tac | 17 | 17 | B.1.429 | 0.0004 |
ORF8 | 17 | H17Y | Cac | Tac | 16 | 16 | AY.3 | 0.000159 |
ORF8 | 17 | H17H | caC | caT | 16 | 16 | B | 0.002045 |
ORF8 | 17 | H17H | caC | caT | 16 | 16 | B.1.1.377 | 0.022099 |
ORF8 | 17 | H17H | caC | caT | 16 | 16 | B.1.1.519 | 0.000635 |
ORF8 | 17 | H17H | caC | caT | 16 | 16 | B.1.177.9 | 0.021305 |
ORF8 | 17 | H17Y | Cac | Tac | 16 | 16 | B.1.243 | 0.001113 |
ORF8 | 17 | H17Y | Cac | Tac | 16 | 16 | P.1 | 0.000252 |
ORF8 | 17 | H17H | caC | caT | 15 | 15 | B.1.351 | 0.000446 |
ORF8 | 17 | H17H | caC | caT | 15 | 15 | B.1.36 | 0.002189 |
ORF8 | 17 | H17H | caC | caT | 15 | 15 | B.1.36.18 | 0.006303 |
ORF8 | 17 | H17H | caC | caT | 14 | 14 | AY.20 | 0.000544 |
ORF8 | 17 | H17R | cAc | cGc | 14 | 14 | AY.4 | 0.000022 |
ORF8 | 17 | H17del | CAC | --- | 14 | 14 | AY.48 | 0.006512 |
ORF8 | 17 | H17Y | Cac | Tac | 14 | 14 | AY.59 | 0.007415 |
ORF8 | 17 | H17Y | Cac | Tac | 14 | 14 | Q.8 | 0.002309 |
ORF8 | 17 | H17Y | Cac | Tac | 13 | 13 | AY.119 | 0.000459 |
ORF8 | 17 | H17H | caC | caT | 13 | 13 | AY.9.2 | 0.000477 |
ORF8 | 17 | H17del | CAC | --- | 13 | 13 | AZ.5 | 0.045614 |
ORF8 | 17 | H17Y | Cac | Tac | 12 | 12 | AY.27 | 0.000777 |
ORF8 | 17 | H17H | caC | caT | 12 | 12 | AY.39 | 0.000297 |
ORF8 | 17 | H17H | caC | caT | 12 | 12 | AY.39.1 | 0.000475 |
ORF8 | 17 | H17L | cAc | cTc | 12 | 12 | AY.4.2 | 0.00026 |
ORF8 | 17 | H17del1 | CaC | -aT | 12 | 12 | B.1.177 | 0.000158 |
ORF8 | 17 | H17H | caC | caT | 12 | 12 | B.1.177.31 | 0.137931 |
ORF8 | 17 | H17H | caC | caT | 12 | 12 | B.1.596 | 0.001046 |
ORF8 | 17 | H17Y | Cac | Tac | 12 | 12 | Q.1 | 0.001516 |
ORF8 | 17 | H17H | caC | caT | 11 | 11 | AY.119 | 0.000388 |
ORF8 | 17 | H17del | CAC | --- | 11 | 11 | AY.46 | 0.001145 |
ORF8 | 17 | H17H | caC | caT | 11 | 11 | AY.46.6 | 0.000794 |
ORF8 | 17 | H17Y | Cac | Tac | 11 | 11 | AY.9.2 | 0.000404 |
ORF8 | 17 | H17H | caC | caT | 11 | 11 | B.1.177.35 | 0.007602 |
ORF8 | 17 | H17H | caC | caT | 11 | 11 | B.1.177.64 | 1 |
ORF8 | 17 | H17del | CAC | --- | 11 | 11 | B.1.2 | 0.000097 |
ORF8 | 17 | H17H | caC | caT | 11 | 11 | B.1.243 | 0.000765 |
ORF8 | 17 | H17H | caC | caT | 10 | 10 | AY.113 | 0.001424 |
ORF8 | 17 | H17Y | Cac | Tac | 10 | 10 | AY.23 | 0.000697 |
ORF8 | 17 | H17H | caC | caT | 10 | 10 | AY.46.4 | 0.001645 |
ORF8 | 17 | H17H | caC | caT | 10 | 10 | AY.61 | 0.001048 |
ORF8 | 17 | H17R | cAc | cGc | 6 | 10 | B.1 | 0.000055 |
ORF8 | 17 | H17R | cAC | cGG | 4 | 10 | B.1 | 0.000037 |
ORF8 | 17 | H17del | CAC | --- | 10 | 10 | B.1.177 | 0.000132 |
ORF8 | 17 | H17H | caC | caT | 10 | 10 | B.1.361 | 0.012887 |
ORF8 | 17 | H17H | caC | caT | 10 | 10 | Q.8 | 0.001649 |
ORF8 | 17 | H17del | CAC | --- | 9 | 9 | AD.1 | 0.037037 |
ORF8 | 17 | H17del | CAC | --- | 9 | 9 | AY.29.1 | 0.001985 |
ORF8 | 17 | H17Y | Cac | Tac | 9 | 9 | AY.33 | 0.000601 |
ORF8 | 17 | H17H | caC | caT | 9 | 9 | AY.34.1 | 0.004589 |
ORF8 | 17 | H17H | caC | caT | 9 | 9 | AY.47 | 0.00028 |
ORF8 | 17 | H17H | caC | caT | 9 | 9 | AY.9.1 | 0.000754 |
ORF8 | 17 | H17H | caC | caT | 9 | 9 | B.1.1.344 | 0.096774 |
ORF8 | 17 | H17del | CAC | --- | 9 | 9 | B.1.160 | 0.000281 |
ORF8 | 17 | H17H | caC | caT | 9 | 9 | B.1.221 | 0.000639 |
ORF8 | 17 | H17H | caC | caT | 9 | 9 | B.1.280 | 0.064286 |
ORF8 | 17 | H17F | CAC | TTT | 4 | 8 | All | 0.000001 |
ORF8 | 17 | H17F | CAc | TTc | 4 | 8 | All | 0.000001 |
ORF8 | 17 | H17del1 | Cac | -ac | 8 | 8 | AY.110 | 0.000902 |
ORF8 | 17 | H17H | caC | caT | 8 | 8 | AY.3.1 | 0.000682 |
ORF8 | 17 | H17H | caC | caT | 8 | 8 | AY.4.5 | 0.00086 |
ORF8 | 17 | H17Y | Cac | Tac | 8 | 8 | AY.61 | 0.000838 |
ORF8 | 17 | H17Y | Cac | Tac | 8 | 8 | B.1.1.294 | 0.010127 |
ORF8 | 17 | H17del | CAC | --- | 8 | 8 | B.1.1.318 | 0.002414 |
ORF8 | 17 | H17H | caC | caT | 8 | 8 | B.1.177.44 | 0.004152 |
ORF8 | 17 | H17Q | caC | caA | 8 | 8 | B.1.526 | 0.000188 |
ORF8 | 17 | H17Y | Cac | Tac | 8 | 8 | P.1.14 | 0.000382 |
ORF8 | 17 | H17Y | Cac | Tac | 8 | 8 | P.2 | 0.001493 |
ORF8 | 17 | H17Y | Cac | Tac | 7 | 7 | AY.100 | 0.000322 |
ORF8 | 17 | H17H | caC | caT | 7 | 7 | AY.117 | 0.000592 |
ORF8 | 17 | H17H | caC | caT | 7 | 7 | AY.120 | 0.00026 |
ORF8 | 17 | H17del1 | Cac | -ac | 7 | 7 | AY.4 | 0.000011 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | AY.43 | 0.000031 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | AY.44 | 0.000043 |
ORF8 | 17 | H17H | caC | caT | 7 | 7 | AY.70 | 0.00146 |
ORF8 | 17 | H17Y | Cac | Tac | 7 | 7 | AY.98.1 | 0.000339 |
ORF8 | 17 | H17N | Cac | Aac | 6 | 7 | B.1 | 0.000055 |
ORF8 | 17 | H17N | CaC | AaT | 1 | 7 | B.1 | 0.000009 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | B.1.1.265 | 0.022082 |
ORF8 | 17 | H17L | cAc | cTc | 7 | 7 | B.1.1.7 | 0.000006 |
ORF8 | 17 | H17D | Cac | Gac | 7 | 7 | B.1.160 | 0.000218 |
ORF8 | 17 | H17H | caC | caT | 7 | 7 | B.1.258.11 | 0.002774 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | B.1.36.16 | 0.009972 |
ORF8 | 17 | H17H | caC | caT | 7 | 7 | B.1.36.39 | 0.015521 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | B.1.429 | 0.000165 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | B.1.526 | 0.000165 |
ORF8 | 17 | H17H | caC | caT | 7 | 7 | B.1.621 | 0.00062 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | P.1 | 0.00011 |
ORF8 | 17 | H17del | CAC | --- | 7 | 7 | P.1.14 | 0.000335 |
ORF8 | 17 | H17H | caC | caT | 7 | 7 | P.1.15 | 0.001626 |
ORF8 | 17 | H17H | caC | caT | 7 | 7 | Q.1 | 0.000884 |
ORF8 | 17 | H17S | CAc | TCc | 3 | 6 | All | 0.000001 |
ORF8 | 17 | H17S | CAc | AGc | 2 | 6 | All | 0 |
ORF8 | 17 | H17S | CAC | TCT | 1 | 6 | All | 0 |
ORF8 | 17 | H17D | Cac | Gac | 6 | 6 | AY.103 | 0.000037 |
ORF8 | 17 | H17Y | Cac | Tac | 6 | 6 | AY.20 | 0.000233 |
ORF8 | 17 | H17del | CAC | --- | 6 | 6 | AY.3 | 0.00006 |
ORF8 | 17 | H17del | CAC | --- | 6 | 6 | AY.3.1 | 0.000512 |
ORF8 | 17 | H17H | caC | caT | 6 | 6 | AY.37 | 0.001896 |
ORF8 | 17 | H17H | caC | caT | 6 | 6 | AY.96 | 0.012448 |
ORF8 | 17 | H17Y | Cac | Tac | 6 | 6 | B | 0.000767 |
ORF8 | 17 | H17H | caC | caT | 6 | 6 | B.1.1.170 | 0.007481 |
ORF8 | 17 | H17Y | Cac | Tac | 6 | 6 | B.1.1.170 | 0.007481 |
ORF8 | 17 | H17Y | Cac | Tac | 6 | 6 | B.1.1.222 | 0.001224 |
ORF8 | 17 | H17H | caC | caT | 6 | 6 | B.1.1.326 | 0.010563 |
ORF8 | 17 | H17H | caC | caT | 6 | 6 | B.1.1.37 | 0.001157 |
ORF8 | 17 | H17H | caC | caT | 6 | 6 | B.1.177.72 | 0.020339 |
ORF8 | 17 | H17H | caC | caT | 6 | 6 | B.1.234 | 0.000792 |
ORF8 | 17 | H17del | CAC | --- | 6 | 6 | B.1.243.2 | 0.086957 |
ORF8 | 17 | H17H | caC | caT | 6 | 6 | B.1.258.17 | 0.000624 |
ORF8 | 17 | H17H | caC | caT | 6 | 6 | B.1.416 | 0.007614 |
ORF8 | 17 | H17Y | Cac | Tac | 6 | 6 | B.1.427 | 0.000303 |
ORF8 | 17 | H17del | CAC | --- | 6 | 6 | B.1.596 | 0.000523 |
ORF8 | 17 | H17del | CAC | --- | 6 | 6 | B.1.617.2 | 0.000023 |
ORF8 | 17 | H17H | caC | caT | 6 | 6 | B.1.637 | 0.000438 |
ORF8 | 17 | H17H | caC | caT | 6 | 6 | B.4.1 | 0.113208 |
ORF8 | 17 | H17P | cAc | cCc | 4 | 5 | All | 0.000001 |
ORF8 | 17 | H17P | cAC | cCT | 1 | 5 | All | 0 |
ORF8 | 17 | H17del1 | Cac | -ac | 5 | 5 | AY.103 | 0.000031 |
ORF8 | 17 | H17R | cAc | cGc | 5 | 5 | AY.119 | 0.000177 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | AY.120 | 0.000186 |
ORF8 | 17 | H17H | caC | caT | 5 | 5 | AY.14 | 0.00044 |
ORF8 | 17 | H17del | CAC | --- | 5 | 5 | AY.25 | 0.00003 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | AY.29.1 | 0.001103 |
ORF8 | 17 | H17H | caC | caT | 5 | 5 | AY.32 | 0.002662 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | AY.9.1 | 0.000419 |
ORF8 | 17 | H17Q | caC | caA | 4 | 5 | B.1.1 | 0.000073 |
ORF8 | 17 | H17Q | caC | caG | 1 | 5 | B.1.1 | 0.000018 |
ORF8 | 17 | H17H | caC | caT | 5 | 5 | B.1.1.25 | 0.002843 |
ORF8 | 17 | H17H | caC | caT | 5 | 5 | B.1.1.311 | 0.001791 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | B.1.1.358 | 0.172414 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | B.1.1.433 | 0.007123 |
ORF8 | 17 | H17N | Cac | Aac | 5 | 5 | B.1.1.7 | 0.000004 |
ORF8 | 17 | H17H | caC | caT | 5 | 5 | B.1.177.15 | 0.003155 |
ORF8 | 17 | H17H | caC | caT | 5 | 5 | B.1.177.45 | 0.001906 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | B.1.221 | 0.000355 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 5 | B.1.258 | 0.000266 |
ORF8 | 17 | H17Y | CaC | TaT | 1 | 5 | B.1.258 | 0.000067 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | B.1.36 | 0.00073 |
ORF8 | 17 | H17H | caC | caT | 5 | 5 | B.1.36.17 | 0.00247 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | B.1.526 | 0.000118 |
ORF8 | 17 | H17Y | Cac | Tac | 5 | 5 | D.2 | 0.000375 |
ORF8 | 17 | H17H | caC | caT | 5 | 5 | P.2 | 0.000933 |
ORF8 | 17 | H17del | CAC | --- | 4 | 4 | 0.222222 | |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 4 | 0.166667 | |
ORF8 | 17 | H17L | cAC | cTT | 3 | 4 | 0.166667 | |
ORF8 | 17 | H17F | CAc | TTc | 3 | 4 | 0.166667 | |
ORF8 | 17 | H17Y | CaC | TaT | 1 | 4 | 0.055556 | |
ORF8 | 17 | H17F | CAC | TTT | 1 | 4 | 0.055556 | |
ORF8 | 17 | H17L | cAc | cTc | 1 | 4 | 0.055556 | |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 4 | AY.121 | 0.000541 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | AY.23 | 0.000279 |
ORF8 | 17 | H17R | cAc | cGc | 4 | 4 | AY.25 | 0.000024 |
ORF8 | 17 | H17del | CAC | --- | 4 | 4 | AY.34 | 0.000388 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 4 | AY.34 | 0.000388 |
ORF8 | 17 | H17Q | caC | caG | 4 | 4 | AY.34 | 0.000388 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 4 | AY.39 | 0.000099 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | AY.45 | 0.000487 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | AY.46.3 | 0.003735 |
ORF8 | 17 | H17del | CAC | --- | 4 | 4 | AY.98.1 | 0.000194 |
ORF8 | 17 | H17Q | caC | caA | 4 | 4 | B.1 | 0.000037 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 4 | B.1.1.1 | 0.001307 |
ORF8 | 17 | H17N | Cac | Aac | 4 | 4 | B.1.1.132 | 0.059701 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | B.1.1.153 | 0.004381 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | B.1.1.306 | 0.001754 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | B.1.1.315 | 0.033898 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 4 | B.1.1.326 | 0.007042 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | B.1.1.39 | 0.002039 |
ORF8 | 17 | H17del | CAC | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF8 | 17 | H17Q | caC | caG | 2 | 4 | B.1.351 | 0.000059 |
ORF8 | 17 | H17Q | caC | caA | 2 | 4 | B.1.351 | 0.000059 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | B.1.36.27 | 0.003053 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 4 | B.1.36.31 | 0.007005 |
ORF8 | 17 | H17del | CAC | --- | 4 | 4 | B.1.367 | 0.00317 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | B.1.369 | 0.001141 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | B.1.436 | 0.004115 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | B.1.509 | 0.003463 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | B.1.588 | 0.00364 |
ORF8 | 17 | H17Y | Cac | Tac | 4 | 4 | B.1.595 | 0.001044 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | B.1.617.1 | 0.000516 |
ORF8 | 17 | H17Q | caC | caA | 3 | 4 | B.1.617.2 | 0.000011 |
ORF8 | 17 | H17Q | caC | caG | 1 | 4 | B.1.617.2 | 0.000004 |
ORF8 | 17 | H17del | CAC | --- | 4 | 4 | P.1.1 | 0.001271 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | P.1.17 | 0.000647 |
ORF8 | 17 | H17H | caC | caT | 4 | 4 | Q.3 | 0.00058 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | A.2.5 | 0.001497 |
ORF8 | 17 | H17Q | caC | caA | 2 | 3 | AY.102 | 0.000053 |
ORF8 | 17 | H17Q | caC | caG | 1 | 3 | AY.102 | 0.000027 |
ORF8 | 17 | H17del | CAC | --- | 3 | 3 | AY.103 | 0.000019 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | AY.106 | 0.001005 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | AY.110 | 0.000338 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.118 | 0.000188 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.14 | 0.000264 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | AY.16 | 0.001139 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.16 | 0.001139 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.24 | 0.001293 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | AY.34 | 0.000291 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | AY.36 | 0.000445 |
ORF8 | 17 | H17del | CAC | --- | 3 | 3 | AY.37 | 0.000948 |
ORF8 | 17 | H17Q | caC | caA | 3 | 3 | AY.4 | 0.000005 |
ORF8 | 17 | H17D | Cac | Gac | 3 | 3 | AY.4 | 0.000005 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.4.2 | 0.000065 |
ORF8 | 17 | H17del | CAC | --- | 3 | 3 | AY.4.2 | 0.000065 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.42 | 0.000121 |
ORF8 | 17 | H17N | Cac | Aac | 3 | 3 | AY.44 | 0.000018 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.45 | 0.000365 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.46 | 0.000312 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.51 | 0.002727 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.79 | 0.003632 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | AY.92 | 0.000862 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | AY.98.1 | 0.000145 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | AY.99.2 | 0.000276 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | B.1.1.10 | 0.003344 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | B.1.1.33 | 0.001263 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | B.1.1.519 | 0.000119 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | B.1.177.73 | 0.001699 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | B.1.177.82 | 0.001432 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | B.1.258.7 | 0.005736 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | B.1.36.29 | 0.001552 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | B.1.389 | 0.003006 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | B.1.427 | 0.000151 |
ORF8 | 17 | H17del | CAC | --- | 3 | 3 | B.1.509 | 0.002597 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | B.1.540 | 0.029126 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | B.1.582 | 0.001472 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | B.1.637 | 0.000219 |
ORF8 | 17 | H17Y | Cac | Tac | 3 | 3 | K.3 | 0.018519 |
ORF8 | 17 | H17H | caC | caT | 3 | 3 | P.1.7 | 0.000958 |
ORF8 | 17 | H17S | CAc | AGc | 2 | 2 | 0.111111 | |
ORF8 | 17 | H17D | Cac | Gac | 2 | 2 | 0.111111 | |
ORF8 | 17 | H17I | CAc | ATc | 2 | 2 | 0.111111 | |
ORF8 | 17 | H17N | Cac | Aac | 2 | 2 | 0.111111 | |
ORF8 | 17 | H17G | CAc | GGc | 2 | 2 | 0.111111 | |
ORF8 | 17 | H17V | CAc | GTc | 2 | 2 | 0.111111 | |
ORF8 | 17 | H17C | CAc | TGc | 2 | 2 | 0.111111 | |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | A | 0.000774 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | A.2.2 | 0.003378 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | A.27 | 0.003311 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | AD.2 | 0.000438 |
ORF8 | 17 | H17I | CAc | ATc | 2 | 2 | All | 0 |
ORF8 | 17 | H17G | CAc | GGc | 2 | 2 | All | 0 |
ORF8 | 17 | H17C | CAc | TGc | 2 | 2 | All | 0 |
ORF8 | 17 | H17V | CAc | GTc | 2 | 2 | All | 0 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.10 | 0.00106 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.106 | 0.00067 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | AY.107 | 0.000932 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | AY.114 | 0.000462 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.117 | 0.000169 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | AY.118 | 0.000125 |
ORF8 | 17 | H17Q | caC | caA | 2 | 2 | AY.120.1 | 0.000642 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.120.1 | 0.000642 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | AY.121 | 0.000271 |
ORF8 | 17 | H17R | cAc | cGc | 2 | 2 | AY.121 | 0.000271 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.2 | 0.000712 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.23.1 | 0.000835 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | AY.26 | 0.000057 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | AY.27 | 0.000129 |
ORF8 | 17 | H17Q | caC | caA | 2 | 2 | AY.29 | 0.000032 |
ORF8 | 17 | H17R | cAc | cGc | 2 | 2 | AY.3 | 0.00002 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | AY.33 | 0.000134 |
ORF8 | 17 | H17L | cAc | cTc | 2 | 2 | AY.43 | 0.000009 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | AY.46 | 0.000208 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.47 | 0.000062 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | AY.47 | 0.000062 |
ORF8 | 17 | H17L | cAc | cTc | 2 | 2 | AY.5 | 0.000041 |
ORF8 | 17 | H17D | Cac | Gac | 2 | 2 | AY.5 | 0.000041 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | AY.50 | 0.001599 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.54 | 0.000191 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.6 | 0.000082 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | AY.67 | 0.000929 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.69 | 0.000373 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | AY.85 | 0.000854 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | AY.9 | 0.000135 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | AY.99.2 | 0.000184 |
ORF8 | 17 | H17D | Cac | Gac | 2 | 2 | B.1 | 0.000018 |
ORF8 | 17 | H17D | Cac | Gac | 2 | 2 | B.1.1 | 0.000036 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.1.15 | 0.027027 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.1.214 | 0.000111 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.1.231 | 0.006192 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.1.236 | 0.013793 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.1.241 | 0.004141 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.1.280 | 0.006173 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.1.284 | 0.000215 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.1.306 | 0.000877 |
ORF8 | 17 | H17Q | caC | caA | 2 | 2 | B.1.1.317 | 0.000823 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.1.33 | 0.000842 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.1.351 | 0.005587 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.1.434 | 0.000697 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.1.448 | 0.004065 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.1.466 | 0.017391 |
ORF8 | 17 | H17Q | caC | caG | 2 | 2 | B.1.1.519 | 0.000079 |
ORF8 | 17 | H17D | Cac | Gac | 2 | 2 | B.1.1.7 | 0.000002 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.1.70 | 0.000682 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.126 | 0.002551 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.128 | 0.001271 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.160.16 | 0.001859 |
ORF8 | 17 | H17D | Cac | Gac | 2 | 2 | B.1.177 | 0.000026 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.177.10 | 0.001756 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.177.11 | 0.003396 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.177.12 | 0.000303 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.177.17 | 0.001642 |
ORF8 | 17 | H17D | Cac | Gac | 2 | 2 | B.1.177.73 | 0.001133 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.177.75 | 0.002081 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.179 | 0.007519 |
ORF8 | 17 | H17Q | caC | caA | 2 | 2 | B.1.2 | 0.000018 |
ORF8 | 17 | H17R | cAc | cGc | 2 | 2 | B.1.2 | 0.000018 |
ORF8 | 17 | H17R | cAc | cGc | 2 | 2 | B.1.232 | 0.001075 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.240 | 0.000431 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.241 | 0.001623 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.258.16 | 0.003273 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.265 | 0.002541 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.319 | 0.006098 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.324 | 0.00321 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.36.29 | 0.001035 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.36.38 | 0.003284 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.367 | 0.001585 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.369 | 0.00057 |
ORF8 | 17 | H17del1 | Cac | -ac | 2 | 2 | B.1.396 | 0.001411 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.398 | 0.005952 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.404 | 0.002604 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.422 | 0.001625 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.429.1 | 0.024096 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.466.2 | 0.000782 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.471 | 0.005464 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.497 | 0.00063 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.499 | 0.002101 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.523 | 0.004902 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.530 | 0.014286 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.567 | 0.006667 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.568 | 0.002222 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.599 | 0.007299 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.610 | 0.007092 |
ORF8 | 17 | H17L | cAc | cTc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF8 | 17 | H17R | cAc | cGc | 2 | 2 | B.1.617.2 | 0.000008 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.1.621 | 0.000177 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | B.1.621.1 | 0.001012 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | B.1.9.5 | 0.011364 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | B.40 | 0.000729 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | C.16 | 0.002121 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | C.36 | 0.001821 |
ORF8 | 17 | H17Y | Cac | Tac | 2 | 2 | C.36.3 | 0.001134 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | N.5 | 0.003534 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | P.1.12 | 0.000968 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF8 | 17 | H17H | caC | caT | 2 | 2 | P.1.16 | 0.000748 |
ORF8 | 17 | H17del | CAC | --- | 2 | 2 | R.1 | 0.00018 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | 0.055556 | |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | A | 0.000387 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | A.1 | 0.000282 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | A.12 | 0.166667 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | A.2 | 0.000662 |
ORF8 | 17 | H17P | cAc | cCc | 1 | 1 | A.2.4 | 0.003367 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | A.2.5 | 0.000499 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | A.21 | 0.00277 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | A.5 | 0.001923 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AA.5 | 0.016129 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AD.2 | 0.000219 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AE.4 | 0.043478 |
ORF8 | 17 | H17X | CaC | TaG | 1 | 1 | All | 0 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AM.2 | 0.111111 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.1 | 0.000396 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.10 | 0.00053 |
ORF8 | 17 | H17L | cAc | cTc | 1 | 1 | AY.103 | 0.000006 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | AY.103 | 0.000006 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | AY.103 | 0.000006 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.108 | 0.001103 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.113 | 0.000142 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.116 | 0.000287 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.116 | 0.000287 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.116.1 | 0.000311 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | AY.119 | 0.000035 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.12 | 0.000316 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.12 | 0.000316 |
ORF8 | 17 | H17L | cAc | cTc | 1 | 1 | AY.120 | 0.000037 |
ORF8 | 17 | H17P | cAc | cCc | 1 | 1 | AY.120 | 0.000037 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | AY.14 | 0.000088 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.16.1 | 0.00047 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | AY.16.1 | 0.00047 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.2 | 0.000356 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | AY.20 | 0.000039 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | AY.23.1 | 0.000417 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.30 | 0.000396 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | AY.33 | 0.000067 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.35 | 0.000233 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.38 | 0.000499 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | AY.39 | 0.000025 |
ORF8 | 17 | H17Y | CaC | TaT | 1 | 1 | AY.39.1 | 0.00004 |
ORF8 | 17 | H17L | cAc | cTc | 1 | 1 | AY.4 | 0.000002 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.4.3 | 0.000842 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.4.3 | 0.000842 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.4.4 | 0.000409 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.4.4 | 0.000409 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.4.5 | 0.000107 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.41 | 0.000294 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.41 | 0.000294 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | AY.43 | 0.000004 |
ORF8 | 17 | H17X | CaC | TaG | 1 | 1 | AY.43 | 0.000004 |
ORF8 | 17 | H17P | cAc | cCc | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 17 | H17L | cAc | cTc | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 17 | H17del1 | Cac | -ac | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.46.4 | 0.000165 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.46.4 | 0.000165 |
ORF8 | 17 | H17del1 | Cac | -ac | 1 | 1 | AY.47 | 0.000031 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | AY.47 | 0.000031 |
ORF8 | 17 | H17del1 | caC | ca- | 1 | 1 | AY.48 | 0.000465 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | AY.5 | 0.000021 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.5.4 | 0.000277 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.53 | 0.000288 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.55 | 0.000917 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.55 | 0.000917 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.57 | 0.000656 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.59 | 0.00053 |
ORF8 | 17 | H17D | Cac | Gac | 1 | 1 | AY.6 | 0.000041 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.61 | 0.000105 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.62 | 0.000436 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.67 | 0.000464 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.70 | 0.000209 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.73 | 0.000665 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.75 | 0.000056 |
ORF8 | 17 | H17D | Cac | Gac | 1 | 1 | AY.75.1 | 0.00018 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.75.1 | 0.00018 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.77 | 0.001127 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.79 | 0.001211 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.84 | 0.000437 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.84 | 0.000437 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | AY.86 | 0.00083 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AY.88 | 0.000884 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AY.89 | 0.004902 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.9 | 0.000068 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | AY.9 | 0.000068 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | AY.91 | 0.00073 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | AY.91.1 | 0.004065 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | AY.93 | 0.000273 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.99 | 0.001049 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | AZ.1 | 0.000867 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | AZ.2 | 0.000821 |
ORF8 | 17 | H17F | CAC | TTT | 1 | 1 | AZ.2 | 0.000821 |
ORF8 | 17 | H17S | CAC | TCT | 1 | 1 | AZ.5 | 0.003509 |
ORF8 | 17 | H17Q | caC | caG | 1 | 1 | AZ.5 | 0.003509 |
ORF8 | 17 | H17del1 | Cac | -ac | 1 | 1 | B | 0.000128 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | B | 0.000128 |
ORF8 | 17 | H17D | Cac | Gac | 1 | 1 | B | 0.000128 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | B | 0.000128 |
ORF8 | 17 | H17L | cAc | cTc | 1 | 1 | B.1 | 0.000009 |
ORF8 | 17 | H17S | CAc | TCc | 1 | 1 | B.1 | 0.000009 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.121 | 0.002427 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.128 | 0.007092 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.134 | 0.011364 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.148 | 0.008772 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.171 | 0.003676 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.176 | 0.000439 |
ORF8 | 17 | H17D | Cac | Gac | 1 | 1 | B.1.1.189 | 0.001513 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.214 | 0.000055 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.229 | 0.005747 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.25 | 0.000569 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.251 | 0.007937 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.258 | 0.003257 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.261 | 0.008621 |
ORF8 | 17 | H17del1 | Cac | -ac | 1 | 1 | B.1.1.279 | 0.001121 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.28 | 0.000311 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | B.1.1.28 | 0.000311 |
ORF8 | 17 | H17F | CAc | TTc | 1 | 1 | B.1.1.280 | 0.003086 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.282 | 0.011628 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.284 | 0.000107 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.288 | 0.001916 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.305 | 0.003861 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.307 | 0.002532 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.312 | 0.001912 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.317 | 0.000412 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF8 | 17 | H17P | cAC | cCT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | B.1.1.33 | 0.000421 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.1.354 | 0.004386 |
ORF8 | 17 | H17L | cAc | cTc | 1 | 1 | B.1.1.356 | 0.008547 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.375 | 0.011905 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.39 | 0.00051 |
ORF8 | 17 | H17D | Cac | Gac | 1 | 1 | B.1.1.39 | 0.00051 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.397 | 0.002252 |
ORF8 | 17 | H17del1 | Cac | -ac | 1 | 1 | B.1.1.397 | 0.002252 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.464 | 0.001473 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.507 | 0.008696 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.515 | 0.02 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.517 | 0.006803 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.523 | 0.001563 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.56 | 0.017857 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | B.1.1.63 | 0.000386 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.63 | 0.000386 |
ORF8 | 17 | H17P | cAc | cCc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.1.70 | 0.000341 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.1.98 | 0.018519 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.103 | 0.019231 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.104 | 0.00369 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.111 | 0.001175 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.111 | 0.001175 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.113 | 0.015625 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.147 | 0.000756 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.160.28 | 0.002924 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.160.28 | 0.002924 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.177.16 | 0.000664 |
ORF8 | 17 | H17Y | CaC | TaT | 1 | 1 | B.1.177.2 | 0.004545 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.177.20 | 0.001517 |
ORF8 | 17 | H17Y | CaC | TaT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF8 | 17 | H17L | cAC | cTT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.177.37 | 0.027027 |
ORF8 | 17 | H17R | cAC | cGT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.177.42 | 0.000894 |
ORF8 | 17 | H17S | CAc | TCc | 1 | 1 | B.1.177.63 | 0.002703 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.177.69 | 0.001484 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.177.70 | 0.005917 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.177.87 | 0.000728 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.190 | 0.01 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.195 | 0.005025 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | B.1.2 | 0.000009 |
ORF8 | 17 | H17L | cAc | cTc | 1 | 1 | B.1.2 | 0.000009 |
ORF8 | 17 | H17del1 | caC | ca- | 1 | 1 | B.1.2 | 0.000009 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.206 | 0.000816 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.214 | 0.003663 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | B.1.221 | 0.000071 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.222 | 0.001692 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | B.1.233 | 0.014085 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.234 | 0.000132 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.236 | 0.002053 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.240 | 0.000216 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | B.1.243 | 0.00007 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | B.1.258 | 0.000067 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | B.1.258 | 0.000067 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.258.11 | 0.000396 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.258.12 | 0.007874 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | B.1.258.17 | 0.000104 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF8 | 17 | H17del1 | CAC | -NN | 1 | 1 | B.1.258.17 | 0.000104 |
ORF8 | 17 | H17D | Cac | Gac | 1 | 1 | B.1.258.17 | 0.000104 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.258.19 | 0.007092 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.258.21 | 0.007752 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.258.5 | 0.008772 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.281 | 0.021739 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.306 | 0.005714 |
ORF8 | 17 | H17F | CAC | TTT | 1 | 1 | B.1.311 | 0.000275 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.313 | 0.006579 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.340 | 0.004292 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.346 | 0.001311 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.349 | 0.000715 |
ORF8 | 17 | H17del1 | Cac | -ac | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.351.3 | 0.000876 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | B.1.36 | 0.000146 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | B.1.36 | 0.000146 |
ORF8 | 17 | H17del1 | Cac | -ac | 1 | 1 | B.1.36 | 0.000146 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.36.16 | 0.001425 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.36.36 | 0.000602 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.36.8 | 0.001 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.36.9 | 0.003215 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.396 | 0.000706 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.399 | 0.001934 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.400 | 0.000429 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.409 | 0.000781 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.425 | 0.002994 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.466.2 | 0.000391 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.470 | 0.001404 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.473 | 0.019231 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.498 | 0.020408 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | B.1.499 | 0.00105 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.506 | 0.02381 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.517 | 0.000427 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.525 | 0.000113 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.551 | 0.00129 |
ORF8 | 17 | H17D | Cac | Gac | 1 | 1 | B.1.561 | 0.000397 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.561 | 0.000397 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.564 | 0.000426 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | B.1.576 | 0.000907 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.576 | 0.000907 |
ORF8 | 17 | H17S | CAc | TCc | 1 | 1 | B.1.582 | 0.000491 |
ORF8 | 17 | H17L | cAc | cTc | 1 | 1 | B.1.582 | 0.000491 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | B.1.582 | 0.000491 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.595 | 0.000261 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.597 | 0.00463 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.609 | 0.000479 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.609 | 0.000479 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | B.1.612 | 0.002653 |
ORF8 | 17 | H17D | Cac | Gac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.620 | 0.000946 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.1.621 | 0.000089 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.1.628 | 0.000352 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.3 | 0.000831 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | B.40 | 0.000364 |
ORF8 | 17 | H17F | CAC | TTT | 1 | 1 | B.40 | 0.000364 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | B.6.6 | 0.000889 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | C.26 | 0.007353 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | C.30 | 0.001727 |
ORF8 | 17 | H17D | Cac | Gac | 1 | 1 | C.37 | 0.000116 |
ORF8 | 17 | H17del1 | caC | ca- | 1 | 1 | C.37 | 0.000116 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | D.2 | 0.000075 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | N.3 | 0.005814 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | N.3 | 0.005814 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | N.5 | 0.001767 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | N.6 | 0.007092 |
ORF8 | 17 | H17Q | caC | caA | 1 | 1 | P.1 | 0.000016 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | P.1 | 0.000016 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | P.1.10 | 0.000269 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | P.1.13 | 0.000898 |
ORF8 | 17 | H17D | Cac | Gac | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 17 | H17H | caC | caT | 1 | 1 | P.1.2 | 0.001156 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | P.1.4 | 0.000977 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | P.1.6 | 0.001946 |
ORF8 | 17 | H17N | Cac | Aac | 1 | 1 | P.2 | 0.000187 |
ORF8 | 17 | H17del | CAC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | Q.3 | 0.000145 |
ORF8 | 17 | H17R | cAc | cGc | 1 | 1 | Q.8 | 0.000165 |
ORF8 | 17 | H17Y | Cac | Tac | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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