CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 15 | A15del | del | GCA | --- | 1948 | 1948 | 1 | 27936-27938 | |
ORF8 | 15 | A15T | nonsyn | Gca | Aca | 583 | 582 | 0.998285 | 27936-27938 | |
ORF8 | 15 | A15T | nonsyn | GcA | AcC | 583 | 1 | 0.00171527 | 27936-27938 | |
ORF8 | 15 | A15A | syn | gcA | gcG | 453 | 358 | 0.790287 | 27936-27938 | |
ORF8 | 15 | A15A | syn | gcA | gcT | 453 | 80 | 0.1766 | 27936-27938 | |
ORF8 | 15 | A15A | syn | gcA | gcC | 453 | 15 | 0.0331126 | 27936-27938 | |
ORF8 | 15 | A15V | nonsyn | gCa | gTa | 181 | 179 | 0.98895 | 27936-27938 | |
ORF8 | 15 | A15V | nonsyn | gCA | gTG | 181 | 1 | 0.00552486 | 27936-27938 | |
ORF8 | 15 | A15V | nonsyn | gCA | gTC | 181 | 1 | 0.00552486 | 27936-27938 | |
ORF8 | 15 | A15E | nonsyn | gCa | gAa | 164 | 161 | 0.981707 | 27936-27938 | |
ORF8 | 15 | A15E | nonsyn | gCA | gAG | 164 | 3 | 0.0182927 | 27936-27938 | |
ORF8 | 15 | A15S | nonsyn | Gca | Tca | 53 | 50 | 0.943396 | 27936-27938 | |
ORF8 | 15 | A15S | nonsyn | GCA | AGC | 53 | 2 | 0.0377358 | 27936-27938 | |
ORF8 | 15 | A15S | nonsyn | GCA | AGT | 53 | 1 | 0.0188679 | 27936-27938 | |
ORF8 | 15 | A15G | nonsyn | gCa | gGa | 8 | 4 | 0.5 | 27936-27938 | |
ORF8 | 15 | A15G | nonsyn | gCA | gGC | 8 | 2 | 0.25 | 27936-27938 | |
ORF8 | 15 | A15G | nonsyn | gCA | gGG | 8 | 2 | 0.25 | 27936-27938 | |
ORF8 | 15 | A15P | nonsyn | Gca | Cca | 7 | 6 | 0.857143 | 27936-27938 | |
ORF8 | 15 | A15P | nonsyn | GcA | CcC | 7 | 1 | 0.142857 | 27936-27938 | |
ORF8 | 15 | A15L | nonsyn | GCa | TTa | 5 | 4 | 0.8 | 27936-27938 | |
ORF8 | 15 | A15R | nonsyn | GCa | AGa | 5 | 3 | 0.6 | 27936-27938 | |
ORF8 | 15 | A15R | nonsyn | GCA | AGG | 5 | 2 | 0.4 | 27936-27938 | |
ORF8 | 15 | A15L | nonsyn | GCa | CTa | 5 | 1 | 0.2 | 27936-27938 | |
ORF8 | 15 | A15I | nonsyn | GCa | ATa | 4 | 3 | 0.75 | 27936-27938 | |
ORF8 | 15 | A15X | nonsyn | GCa | TGa | 4 | 2 | 0.5 | 27936-27938 | |
ORF8 | 15 | A15X | nonsyn | GCa | TAa | 4 | 2 | 0.5 | 27936-27938 | |
ORF8 | 15 | A15K | nonsyn | GCa | AAa | 4 | 2 | 0.5 | 27936-27938 | |
ORF8 | 15 | A15K | nonsyn | GCA | AAG | 4 | 2 | 0.5 | 27936-27938 | |
ORF8 | 15 | A15I | nonsyn | GCA | ATC | 4 | 1 | 0.25 | 27936-27938 | |
ORF8 | 15 | A15D | nonsyn | gCA | gAC | 2 | 2 | 1 | 27936-27938 | |
ORF8 | 15 | A15N | nonsyn | GCA | AAC | 2 | 2 | 1 | 27936-27938 | |
ORF8 | 15 | A15F | nonsyn | GCA | TTT | 1 | 1 | 1 | 27936-27938 | |
ORF8 | 15 | A15del2 | del | GCA | --T | 1 | 1 | 1 | 27936-27938 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 15 | A15del | GCA | --- | 1948 | 1948 | All | 0.000373 |
ORF8 | 15 | A15del | GCA | --- | 1308 | 1308 | B.1.623 | 0.701717 |
ORF8 | 15 | A15T | Gca | Aca | 582 | 583 | All | 0.000111 |
ORF8 | 15 | A15T | GcA | AcC | 1 | 583 | All | 0 |
ORF8 | 15 | A15A | gcA | gcG | 358 | 453 | All | 0.000068 |
ORF8 | 15 | A15A | gcA | gcT | 80 | 453 | All | 0.000015 |
ORF8 | 15 | A15A | gcA | gcC | 15 | 453 | All | 0.000003 |
ORF8 | 15 | A15T | Gca | Aca | 430 | 430 | AY.4 | 0.000669 |
ORF8 | 15 | A15V | gCa | gTa | 179 | 181 | All | 0.000034 |
ORF8 | 15 | A15V | gCA | gTC | 1 | 181 | All | 0 |
ORF8 | 15 | A15V | gCA | gTG | 1 | 181 | All | 0 |
ORF8 | 15 | A15E | gCa | gAa | 161 | 164 | All | 0.000031 |
ORF8 | 15 | A15E | gCA | gAG | 3 | 164 | All | 0.000001 |
ORF8 | 15 | A15del | GCA | --- | 97 | 97 | B.1.1.7 | 0.000087 |
ORF8 | 15 | A15E | gCa | gAa | 87 | 87 | B.1.1.7 | 0.000078 |
ORF8 | 15 | A15A | gcA | gcG | 67 | 86 | B.1.609 | 0.032119 |
ORF8 | 15 | A15A | gcA | gcT | 19 | 86 | B.1.609 | 0.009108 |
ORF8 | 15 | A15del | GCA | --- | 71 | 71 | AY.4 | 0.000111 |
ORF8 | 15 | A15A | gcA | gcG | 70 | 70 | R.1 | 0.006301 |
ORF8 | 15 | A15A | gcA | gcG | 58 | 65 | B.1.1.7 | 0.000052 |
ORF8 | 15 | A15A | gcA | gcT | 7 | 65 | B.1.1.7 | 0.000006 |
ORF8 | 15 | A15S | Gca | Tca | 50 | 53 | All | 0.00001 |
ORF8 | 15 | A15S | GCA | AGC | 2 | 53 | All | 0 |
ORF8 | 15 | A15S | GCA | AGT | 1 | 53 | All | 0 |
ORF8 | 15 | A15E | gCa | gAa | 51 | 51 | AY.5 | 0.001053 |
ORF8 | 15 | A15del | GCA | --- | 47 | 47 | B.1.243 | 0.00327 |
ORF8 | 15 | A15del | GCA | --- | 39 | 39 | AY.29 | 0.000615 |
ORF8 | 15 | A15del | GCA | --- | 33 | 33 | B.1.1.222 | 0.006732 |
ORF8 | 15 | A15V | gCa | gTa | 32 | 32 | AY.44 | 0.000195 |
ORF8 | 15 | A15V | gCa | gTa | 27 | 27 | B.1.1.7 | 0.000024 |
ORF8 | 15 | A15del | GCA | --- | 24 | 24 | B.1 | 0.00022 |
ORF8 | 15 | A15del | GCA | --- | 23 | 23 | B.1.1 | 0.000417 |
ORF8 | 15 | A15A | gcA | gcG | 18 | 21 | B.1 | 0.000165 |
ORF8 | 15 | A15A | gcA | gcT | 2 | 21 | B.1 | 0.000018 |
ORF8 | 15 | A15A | gcA | gcC | 1 | 21 | B.1 | 0.000009 |
ORF8 | 15 | A15V | gCa | gTa | 20 | 20 | AY.3 | 0.000199 |
ORF8 | 15 | A15V | gCa | gTa | 20 | 20 | AY.4 | 0.000031 |
ORF8 | 15 | A15A | gcA | gcG | 18 | 20 | AY.43 | 0.00008 |
ORF8 | 15 | A15A | gcA | gcT | 1 | 20 | AY.43 | 0.000004 |
ORF8 | 15 | A15A | gcA | gcC | 1 | 20 | AY.43 | 0.000004 |
ORF8 | 15 | A15A | gcA | gcG | 12 | 20 | B.1.617.2 | 0.000045 |
ORF8 | 15 | A15A | gcA | gcT | 6 | 20 | B.1.617.2 | 0.000023 |
ORF8 | 15 | A15A | gcA | gcC | 2 | 20 | B.1.617.2 | 0.000008 |
ORF8 | 15 | A15A | gcA | gcG | 11 | 18 | AY.44 | 0.000067 |
ORF8 | 15 | A15A | gcA | gcT | 7 | 18 | AY.44 | 0.000043 |
ORF8 | 15 | A15del | GCA | --- | 18 | 18 | B | 0.002301 |
ORF8 | 15 | A15A | gcA | gcG | 17 | 17 | B.40 | 0.006193 |
ORF8 | 15 | A15T | Gca | Aca | 16 | 16 | AY.29 | 0.000252 |
ORF8 | 15 | A15del | GCA | --- | 15 | 15 | AZ.5 | 0.052632 |
ORF8 | 15 | A15T | Gca | Aca | 14 | 14 | AY.43 | 0.000062 |
ORF8 | 15 | A15del | GCA | --- | 14 | 14 | AY.48 | 0.006512 |
ORF8 | 15 | A15V | gCa | gTa | 14 | 14 | B.1.36 | 0.002043 |
ORF8 | 15 | A15T | Gca | Aca | 13 | 13 | B.1.2 | 0.000114 |
ORF8 | 15 | A15A | gcA | gcG | 12 | 12 | AY.55 | 0.011009 |
ORF8 | 15 | A15S | Gca | Tca | 11 | 12 | B.1.1.7 | 0.00001 |
ORF8 | 15 | A15S | GCA | AGT | 1 | 12 | B.1.1.7 | 0.000001 |
ORF8 | 15 | A15E | gCa | gAa | 11 | 11 | AY.20 | 0.000428 |
ORF8 | 15 | A15A | gcA | gcG | 11 | 11 | AY.6 | 0.000452 |
ORF8 | 15 | A15T | Gca | Aca | 10 | 10 | B.1.1.7 | 0.000009 |
ORF8 | 15 | A15del | GCA | --- | 10 | 10 | B.1.2 | 0.000088 |
ORF8 | 15 | A15T | Gca | Aca | 10 | 10 | B.1.617.2 | 0.000038 |
ORF8 | 15 | A15del | GCA | --- | 9 | 9 | AD.1 | 0.037037 |
ORF8 | 15 | A15del | GCA | --- | 9 | 9 | AY.29.1 | 0.001985 |
ORF8 | 15 | A15del | GCA | --- | 9 | 9 | B.1.160 | 0.000281 |
ORF8 | 15 | A15V | gCa | gTa | 9 | 9 | B.1.177 | 0.000119 |
ORF8 | 15 | A15del | GCA | --- | 9 | 9 | B.1.177 | 0.000119 |
ORF8 | 15 | A15T | Gca | Aca | 9 | 9 | B.1.177.54 | 0.005458 |
ORF8 | 15 | A15A | gcA | gcG | 8 | 9 | P.1 | 0.000126 |
ORF8 | 15 | A15A | gcA | gcT | 1 | 9 | P.1 | 0.000016 |
ORF8 | 15 | A15G | gCa | gGa | 4 | 8 | All | 0.000001 |
ORF8 | 15 | A15G | gCA | gGC | 2 | 8 | All | 0 |
ORF8 | 15 | A15G | gCA | gGG | 2 | 8 | All | 0 |
ORF8 | 15 | A15A | gcA | gcG | 6 | 8 | AY.4 | 0.000009 |
ORF8 | 15 | A15A | gcA | gcT | 2 | 8 | AY.4 | 0.000003 |
ORF8 | 15 | A15T | Gca | Aca | 8 | 8 | AY.42 | 0.000322 |
ORF8 | 15 | A15del | GCA | --- | 8 | 8 | B.1.1.318 | 0.002414 |
ORF8 | 15 | A15A | gcA | gcT | 7 | 8 | B.1.177 | 0.000092 |
ORF8 | 15 | A15A | gcA | gcC | 1 | 8 | B.1.177 | 0.000013 |
ORF8 | 15 | A15P | Gca | Cca | 6 | 7 | All | 0.000001 |
ORF8 | 15 | A15P | GcA | CcC | 1 | 7 | All | 0 |
ORF8 | 15 | A15T | Gca | Aca | 7 | 7 | AY.102 | 0.000186 |
ORF8 | 15 | A15S | Gca | Tca | 7 | 7 | AY.44 | 0.000043 |
ORF8 | 15 | A15del | GCA | --- | 7 | 7 | AY.44 | 0.000043 |
ORF8 | 15 | A15T | Gca | Aca | 7 | 7 | AY.9.1 | 0.000586 |
ORF8 | 15 | A15del | GCA | --- | 7 | 7 | B.1.1.265 | 0.022082 |
ORF8 | 15 | A15del | GCA | --- | 7 | 7 | B.1.36.16 | 0.009972 |
ORF8 | 15 | A15del | GCA | --- | 7 | 7 | B.1.429 | 0.000165 |
ORF8 | 15 | A15A | gcA | gcG | 7 | 7 | B.1.525 | 0.000792 |
ORF8 | 15 | A15del | GCA | --- | 7 | 7 | B.1.526 | 0.000165 |
ORF8 | 15 | A15del | GCA | --- | 7 | 7 | B.1.617.2 | 0.000026 |
ORF8 | 15 | A15V | gCa | gTa | 7 | 7 | B.1.617.2 | 0.000026 |
ORF8 | 15 | A15del | GCA | --- | 7 | 7 | P.1 | 0.00011 |
ORF8 | 15 | A15del | GCA | --- | 7 | 7 | P.1.14 | 0.000335 |
ORF8 | 15 | A15G | gCA | gGC | 2 | 6 | 0.111111 | |
ORF8 | 15 | A15G | gCA | gGG | 2 | 6 | 0.111111 | |
ORF8 | 15 | A15G | gCa | gGa | 2 | 6 | 0.111111 | |
ORF8 | 15 | A15V | gCa | gTa | 6 | 6 | AY.103 | 0.000037 |
ORF8 | 15 | A15del | GCA | --- | 6 | 6 | AY.3 | 0.00006 |
ORF8 | 15 | A15del | GCA | --- | 6 | 6 | AY.3.1 | 0.000512 |
ORF8 | 15 | A15del | GCA | --- | 6 | 6 | AY.43 | 0.000027 |
ORF8 | 15 | A15T | Gca | Aca | 6 | 6 | B.1.1 | 0.000109 |
ORF8 | 15 | A15del | GCA | --- | 6 | 6 | B.1.243.2 | 0.086957 |
ORF8 | 15 | A15del | GCA | --- | 6 | 6 | B.1.596 | 0.000523 |
ORF8 | 15 | A15T | Gca | Aca | 6 | 6 | C.37 | 0.000696 |
ORF8 | 15 | A15L | GCa | TTa | 4 | 5 | All | 0.000001 |
ORF8 | 15 | A15R | GCa | AGa | 3 | 5 | All | 0.000001 |
ORF8 | 15 | A15R | GCA | AGG | 2 | 5 | All | 0 |
ORF8 | 15 | A15L | GCa | CTa | 1 | 5 | All | 0 |
ORF8 | 15 | A15T | Gca | Aca | 5 | 5 | AY.103 | 0.000031 |
ORF8 | 15 | A15del | GCA | --- | 5 | 5 | AY.25 | 0.00003 |
ORF8 | 15 | A15E | gCa | gAa | 5 | 5 | AY.25 | 0.00003 |
ORF8 | 15 | A15S | Gca | Tca | 5 | 5 | AY.4 | 0.000008 |
ORF8 | 15 | A15A | gcA | gcT | 5 | 5 | B.1.1.59 | 0.032468 |
ORF8 | 15 | A15S | Gca | Tca | 5 | 5 | B.1.258.3 | 0.008375 |
ORF8 | 15 | A15S | Gca | Tca | 5 | 5 | B.1.617.2 | 0.000019 |
ORF8 | 15 | A15del | GCA | --- | 4 | 4 | 0.222222 | |
ORF8 | 15 | A15V | gCa | gTa | 3 | 4 | 0.166667 | |
ORF8 | 15 | A15I | GCa | ATa | 3 | 4 | 0.166667 | |
ORF8 | 15 | A15K | GCA | AAG | 2 | 4 | 0.111111 | |
ORF8 | 15 | A15E | gCA | gAG | 2 | 4 | 0.111111 | |
ORF8 | 15 | A15K | GCa | AAa | 2 | 4 | 0.111111 | |
ORF8 | 15 | A15R | GCa | AGa | 2 | 4 | 0.111111 | |
ORF8 | 15 | A15X | GCa | TAa | 2 | 4 | 0.111111 | |
ORF8 | 15 | A15X | GCa | TGa | 2 | 4 | 0.111111 | |
ORF8 | 15 | A15E | gCa | gAa | 2 | 4 | 0.111111 | |
ORF8 | 15 | A15R | GCA | AGG | 2 | 4 | 0.111111 | |
ORF8 | 15 | A15I | GCA | ATC | 1 | 4 | 0.055556 | |
ORF8 | 15 | A15V | gCA | gTC | 1 | 4 | 0.055556 | |
ORF8 | 15 | A15I | GCa | ATa | 3 | 4 | All | 0.000001 |
ORF8 | 15 | A15K | GCa | AAa | 2 | 4 | All | 0 |
ORF8 | 15 | A15X | GCa | TAa | 2 | 4 | All | 0 |
ORF8 | 15 | A15X | GCa | TGa | 2 | 4 | All | 0 |
ORF8 | 15 | A15K | GCA | AAG | 2 | 4 | All | 0 |
ORF8 | 15 | A15I | GCA | ATC | 1 | 4 | All | 0 |
ORF8 | 15 | A15A | gcA | gcG | 4 | 4 | AY.25 | 0.000024 |
ORF8 | 15 | A15A | gcA | gcT | 4 | 4 | AY.3 | 0.00004 |
ORF8 | 15 | A15T | Gca | Aca | 4 | 4 | AY.3.1 | 0.000341 |
ORF8 | 15 | A15del | GCA | --- | 4 | 4 | AY.34 | 0.000388 |
ORF8 | 15 | A15A | gcA | gcC | 4 | 4 | AY.84 | 0.00175 |
ORF8 | 15 | A15del | GCA | --- | 4 | 4 | AY.98.1 | 0.000194 |
ORF8 | 15 | A15del | GCA | --- | 4 | 4 | B.1.1.519 | 0.000159 |
ORF8 | 15 | A15A | gcA | gcT | 4 | 4 | B.1.2 | 0.000035 |
ORF8 | 15 | A15del | GCA | --- | 4 | 4 | B.1.367 | 0.00317 |
ORF8 | 15 | A15del | GCA | --- | 4 | 4 | P.1.1 | 0.001271 |
ORF8 | 15 | A15del | GCA | --- | 3 | 3 | AY.103 | 0.000019 |
ORF8 | 15 | A15A | gcA | gcG | 3 | 3 | AY.103 | 0.000019 |
ORF8 | 15 | A15A | gcA | gcG | 3 | 3 | AY.118 | 0.000188 |
ORF8 | 15 | A15T | Gca | Aca | 3 | 3 | AY.3 | 0.00003 |
ORF8 | 15 | A15del | GCA | --- | 3 | 3 | AY.37 | 0.000948 |
ORF8 | 15 | A15del | GCA | --- | 3 | 3 | AY.4.2 | 0.000065 |
ORF8 | 15 | A15T | Gca | Aca | 3 | 3 | AY.44 | 0.000018 |
ORF8 | 15 | A15A | gcA | gcG | 3 | 3 | AY.46 | 0.000312 |
ORF8 | 15 | A15A | gcA | gcC | 3 | 3 | AY.99.2 | 0.000276 |
ORF8 | 15 | A15V | gCa | gTa | 3 | 3 | B.1 | 0.000027 |
ORF8 | 15 | A15A | gcA | gcG | 3 | 3 | B.1.1.301 | 0.003538 |
ORF8 | 15 | A15V | gCa | gTa | 3 | 3 | B.1.1.526 | 0.010638 |
ORF8 | 15 | A15A | gcA | gcG | 3 | 3 | B.1.160 | 0.000094 |
ORF8 | 15 | A15S | Gca | Tca | 3 | 3 | B.1.36.29 | 0.001552 |
ORF8 | 15 | A15del | GCA | --- | 3 | 3 | B.1.509 | 0.002597 |
ORF8 | 15 | A15del | GCA | --- | 3 | 3 | B.1.621 | 0.000266 |
ORF8 | 15 | A15L | GCa | TTa | 2 | 2 | 0.111111 | |
ORF8 | 15 | A15N | GCA | AAC | 2 | 2 | 0.111111 | |
ORF8 | 15 | A15D | gCA | gAC | 2 | 2 | 0.111111 | |
ORF8 | 15 | A15S | GCA | AGC | 2 | 2 | 0.111111 | |
ORF8 | 15 | A15T | Gca | Aca | 1 | 2 | 0.055556 | |
ORF8 | 15 | A15T | GcA | AcC | 1 | 2 | 0.055556 | |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | A.2.2 | 0.003378 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | AD.2 | 0.000438 |
ORF8 | 15 | A15N | GCA | AAC | 2 | 2 | All | 0 |
ORF8 | 15 | A15D | gCA | gAC | 2 | 2 | All | 0 |
ORF8 | 15 | A15A | gcA | gcG | 2 | 2 | AY.102 | 0.000053 |
ORF8 | 15 | A15P | Gca | Cca | 2 | 2 | AY.103 | 0.000012 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | AY.114 | 0.000462 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | AY.118 | 0.000125 |
ORF8 | 15 | A15V | gCa | gTa | 2 | 2 | AY.25 | 0.000012 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | AY.26 | 0.000057 |
ORF8 | 15 | A15A | gcA | gcG | 2 | 2 | AY.26 | 0.000057 |
ORF8 | 15 | A15A | gcA | gcT | 2 | 2 | AY.30 | 0.000791 |
ORF8 | 15 | A15V | gCa | gTa | 2 | 2 | AY.30 | 0.000791 |
ORF8 | 15 | A15T | Gca | Aca | 2 | 2 | AY.39 | 0.000049 |
ORF8 | 15 | A15V | gCa | gTa | 2 | 2 | AY.4.5 | 0.000215 |
ORF8 | 15 | A15A | gcA | gcG | 2 | 2 | AY.45 | 0.000243 |
ORF8 | 15 | A15T | Gca | Aca | 2 | 2 | AY.46.4 | 0.000329 |
ORF8 | 15 | A15A | gcA | gcT | 2 | 2 | AY.47 | 0.000062 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | AY.47 | 0.000062 |
ORF8 | 15 | A15T | Gca | Aca | 2 | 2 | AY.5 | 0.000041 |
ORF8 | 15 | A15A | gcA | gcG | 2 | 2 | AY.62 | 0.000871 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | AY.67 | 0.000929 |
ORF8 | 15 | A15A | gcA | gcG | 2 | 2 | AY.74 | 0.000231 |
ORF8 | 15 | A15E | gCA | gAG | 1 | 2 | B.1 | 0.000009 |
ORF8 | 15 | A15E | gCa | gAa | 1 | 2 | B.1 | 0.000009 |
ORF8 | 15 | A15V | gCa | gTa | 2 | 2 | B.1.1 | 0.000036 |
ORF8 | 15 | A15A | gcA | gcG | 2 | 2 | B.1.1 | 0.000036 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | B.1.1.214 | 0.000111 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | B.1.1.306 | 0.000877 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | B.1.126 | 0.002551 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | B.1.258 | 0.000133 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | B.1.36.17 | 0.000988 |
ORF8 | 15 | A15A | gcA | gcG | 2 | 2 | B.1.375 | 0.001639 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | B.1.427 | 0.000101 |
ORF8 | 15 | A15V | gCa | gTa | 2 | 2 | B.1.470 | 0.002809 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | B.40 | 0.000729 |
ORF8 | 15 | A15T | Gca | Aca | 2 | 2 | C.23 | 0.011628 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | P.1.15 | 0.000465 |
ORF8 | 15 | A15V | gCa | gTa | 2 | 2 | P.6 | 0.006289 |
ORF8 | 15 | A15del | GCA | --- | 2 | 2 | R.1 | 0.00018 |
ORF8 | 15 | A15A | gcA | gcC | 1 | 1 | 0.055556 | |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | A.2 | 0.000662 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | A.2.4 | 0.003367 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | A.2.5 | 0.000499 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | A.23.1 | 0.000704 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | AE.4 | 0.043478 |
ORF8 | 15 | A15del2 | GCA | --T | 1 | 1 | All | 0 |
ORF8 | 15 | A15F | GCA | TTT | 1 | 1 | All | 0 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | AY.100 | 0.000046 |
ORF8 | 15 | A15A | gcA | gcT | 1 | 1 | AY.100 | 0.000046 |
ORF8 | 15 | A15S | Gca | Tca | 1 | 1 | AY.102 | 0.000027 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | AY.108 | 0.001103 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | AY.109 | 0.00074 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | AY.119 | 0.000035 |
ORF8 | 15 | A15S | Gca | Tca | 1 | 1 | AY.119 | 0.000035 |
ORF8 | 15 | A15A | gcA | gcT | 1 | 1 | AY.119 | 0.000035 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | AY.20 | 0.000039 |
ORF8 | 15 | A15A | gcA | gcG | 1 | 1 | AY.23 | 0.00007 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | AY.23 | 0.00007 |
ORF8 | 15 | A15G | gCa | gGa | 1 | 1 | AY.25 | 0.000006 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | AY.25 | 0.000006 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | AY.26 | 0.000028 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | AY.34 | 0.000097 |
ORF8 | 15 | A15E | gCa | gAa | 1 | 1 | AY.36 | 0.000148 |
ORF8 | 15 | A15E | gCa | gAa | 1 | 1 | AY.4 | 0.000002 |
ORF8 | 15 | A15P | GcA | CcC | 1 | 1 | AY.4 | 0.000002 |
ORF8 | 15 | A15A | gcA | gcG | 1 | 1 | AY.4.2 | 0.000022 |
ORF8 | 15 | A15A | gcA | gcT | 1 | 1 | AY.4.4 | 0.000409 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | AY.43 | 0.000004 |
ORF8 | 15 | A15E | gCa | gAa | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 15 | A15P | Gca | Cca | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | AY.46 | 0.000104 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | AY.46.4 | 0.000165 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | AY.46.6 | 0.000072 |
ORF8 | 15 | A15S | Gca | Tca | 1 | 1 | AY.47 | 0.000031 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | AY.5 | 0.000021 |
ORF8 | 15 | A15P | Gca | Cca | 1 | 1 | AY.5 | 0.000021 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | AY.51 | 0.000909 |
ORF8 | 15 | A15A | gcA | gcG | 1 | 1 | AY.54 | 0.000095 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | AY.55 | 0.000917 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | AY.61 | 0.000105 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | AY.65 | 0.000533 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | AY.74 | 0.000116 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | AY.75 | 0.000056 |
ORF8 | 15 | A15A | gcA | gcG | 1 | 1 | AY.79 | 0.001211 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | AY.84 | 0.000437 |
ORF8 | 15 | A15A | gcA | gcT | 1 | 1 | AY.86 | 0.00083 |
ORF8 | 15 | A15A | gcA | gcT | 1 | 1 | AY.9 | 0.000068 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | AY.9 | 0.000068 |
ORF8 | 15 | A15A | gcA | gcG | 1 | 1 | AY.9.2 | 0.000037 |
ORF8 | 15 | A15A | gcA | gcC | 1 | 1 | AY.92 | 0.000287 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | AY.98 | 0.000079 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | AY.98.1 | 0.000048 |
ORF8 | 15 | A15A | gcA | gcC | 1 | 1 | AY.99 | 0.001049 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF8 | 15 | A15L | GCa | TTa | 1 | 1 | AZ.2 | 0.000821 |
ORF8 | 15 | A15R | GCa | AGa | 1 | 1 | AZ.5 | 0.003509 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | B.1 | 0.000009 |
ORF8 | 15 | A15S | Gca | Tca | 1 | 1 | B.1 | 0.000009 |
ORF8 | 15 | A15L | GCa | CTa | 1 | 1 | B.1 | 0.000009 |
ORF8 | 15 | A15P | Gca | Cca | 1 | 1 | B.1 | 0.000009 |
ORF8 | 15 | A15L | GCa | TTa | 1 | 1 | B.1.1 | 0.000018 |
ORF8 | 15 | A15G | gCa | gGa | 1 | 1 | B.1.1 | 0.000018 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.1.174 | 0.003378 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.1.25 | 0.000569 |
ORF8 | 15 | A15A | gcA | gcG | 1 | 1 | B.1.1.280 | 0.003086 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF8 | 15 | A15A | gcA | gcT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.1.354 | 0.004386 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.1.39 | 0.00051 |
ORF8 | 15 | A15F | GCA | TTT | 1 | 1 | B.1.1.396 | 0.045455 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | B.1.1.411 | 0.014706 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | B.1.1.417 | 0.002703 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | B.1.1.432 | 0.001266 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.1.50 | 0.000679 |
ORF8 | 15 | A15S | Gca | Tca | 1 | 1 | B.1.1.519 | 0.00004 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | B.1.1.519 | 0.00004 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.1.70 | 0.000341 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | B.1.111 | 0.001175 |
ORF8 | 15 | A15S | Gca | Tca | 1 | 1 | B.1.147 | 0.000756 |
ORF8 | 15 | A15S | Gca | Tca | 1 | 1 | B.1.177 | 0.000013 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | B.1.177.57 | 0.000281 |
ORF8 | 15 | A15P | Gca | Cca | 1 | 1 | B.1.177.63 | 0.002703 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 15 | A15S | Gca | Tca | 1 | 1 | B.1.177.73 | 0.000566 |
ORF8 | 15 | A15S | Gca | Tca | 1 | 1 | B.1.177.77 | 0.000726 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.195 | 0.005025 |
ORF8 | 15 | A15S | Gca | Tca | 1 | 1 | B.1.2 | 0.000009 |
ORF8 | 15 | A15V | gCA | gTG | 1 | 1 | B.1.2 | 0.000009 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.210 | 0.002132 |
ORF8 | 15 | A15S | Gca | Tca | 1 | 1 | B.1.221 | 0.000071 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | B.1.221 | 0.000071 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | B.1.240 | 0.000216 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | B.1.243 | 0.00007 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | B.1.258 | 0.000067 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | B.1.258.11 | 0.000396 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.258.12 | 0.007874 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF8 | 15 | A15A | gcA | gcT | 1 | 1 | B.1.311 | 0.000275 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.324 | 0.001605 |
ORF8 | 15 | A15S | Gca | Tca | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | B.1.36.24 | 0.006173 |
ORF8 | 15 | A15A | gcA | gcG | 1 | 1 | B.1.36.29 | 0.000517 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.36.29 | 0.000517 |
ORF8 | 15 | A15A | gcA | gcT | 1 | 1 | B.1.367 | 0.000792 |
ORF8 | 15 | A15A | gcA | gcG | 1 | 1 | B.1.369 | 0.000285 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | B.1.369 | 0.000285 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | B.1.372 | 0.010989 |
ORF8 | 15 | A15A | gcA | gcT | 1 | 1 | B.1.381 | 0.007812 |
ORF8 | 15 | A15A | gcA | gcT | 1 | 1 | B.1.429 | 0.000024 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | B.1.466.2 | 0.000391 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF8 | 15 | A15S | Gca | Tca | 1 | 1 | B.1.499 | 0.00105 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.506 | 0.02381 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | B.1.525 | 0.000113 |
ORF8 | 15 | A15del2 | GCA | --T | 1 | 1 | B.1.595 | 0.000261 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.609 | 0.000479 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF8 | 15 | A15E | gCa | gAa | 1 | 1 | B.1.617.2 | 0.000004 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | B.1.625 | 0.002353 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | B.1.630 | 0.005236 |
ORF8 | 15 | A15A | gcA | gcT | 1 | 1 | B.1.637 | 0.000073 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | B.55 | 0.00295 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | C.26 | 0.007353 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | C.35 | 0.000774 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | N.3 | 0.005814 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | N.6 | 0.007092 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | P.1 | 0.000016 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | P.1.12 | 0.000484 |
ORF8 | 15 | A15A | gcA | gcG | 1 | 1 | P.1.12 | 0.000484 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | P.1.14 | 0.000048 |
ORF8 | 15 | A15S | Gca | Tca | 1 | 1 | P.1.15 | 0.000232 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 15 | A15T | Gca | Aca | 1 | 1 | P.2 | 0.000187 |
ORF8 | 15 | A15A | gcA | gcG | 1 | 1 | P.3 | 0.001595 |
ORF8 | 15 | A15del | GCA | --- | 1 | 1 | Q.2 | 0.000613 |
ORF8 | 15 | A15V | gCa | gTa | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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