CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 115 | R115C | nonsyn | Cgt | Tgt | 14744 | 14744 | 1 | 28236-28238 | |
ORF8 | 115 | R115L | nonsyn | cGt | cTt | 1982 | 1978 | 0.997982 | 28236-28238 | |
ORF8 | 115 | R115L | nonsyn | cGT | cTG | 1982 | 2 | 0.00100908 | 28236-28238 | |
ORF8 | 115 | R115L | nonsyn | cGT | cTC | 1982 | 1 | 0.000504541 | 28236-28238 | |
ORF8 | 115 | R115L | nonsyn | CGT | TTG | 1982 | 1 | 0.000504541 | 28236-28238 | |
ORF8 | 115 | R115H | nonsyn | cGt | cAt | 1131 | 1130 | 0.999116 | 28236-28238 | |
ORF8 | 115 | R115H | nonsyn | cGT | cAC | 1131 | 1 | 0.000884173 | 28236-28238 | |
ORF8 | 115 | R115P | nonsyn | cGt | cCt | 414 | 412 | 0.995169 | 28236-28238 | |
ORF8 | 115 | R115P | nonsyn | cGT | cCG | 414 | 2 | 0.00483092 | 28236-28238 | |
ORF8 | 115 | R115S | nonsyn | Cgt | Agt | 394 | 387 | 0.982234 | 28236-28238 | |
ORF8 | 115 | R115S | nonsyn | CGt | TCt | 394 | 4 | 0.0101523 | 28236-28238 | |
ORF8 | 115 | R115S | nonsyn | CGT | TCG | 394 | 2 | 0.00507614 | 28236-28238 | |
ORF8 | 115 | R115S | nonsyn | CgT | AgC | 394 | 1 | 0.00253807 | 28236-28238 | |
ORF8 | 115 | R115del | del | CGT | --- | 386 | 386 | 1 | 28236-28238 | |
ORF8 | 115 | R115R | syn | cgT | cgA | 355 | 201 | 0.566197 | 28236-28238 | |
ORF8 | 115 | R115R | syn | cgT | cgC | 355 | 135 | 0.380282 | 28236-28238 | |
ORF8 | 115 | R115R | syn | cgT | cgG | 355 | 19 | 0.0535211 | 28236-28238 | |
ORF8 | 115 | R115D | nonsyn | CGt | GAt | 8 | 7 | 0.875 | 28236-28238 | |
ORF8 | 115 | R115D | nonsyn | CGT | GAC | 8 | 1 | 0.125 | 28236-28238 | |
ORF8 | 115 | R115del2 | del | CGt | --t | 7 | 4 | 0.571429 | 28236-28238 | |
ORF8 | 115 | R115del2 | del | cGT | c-- | 7 | 3 | 0.428571 | 28236-28238 | |
ORF8 | 115 | R115del1 | del | Cgt | -gt | 6 | 2 | 0.333333 | 28236-28238 | |
ORF8 | 115 | R115del1 | del | CgT | -gN | 6 | 1 | 0.166667 | 28236-28238 | |
ORF8 | 115 | R115del1 | del | cGt | c-t | 6 | 1 | 0.166667 | 28236-28238 | |
ORF8 | 115 | R115del1 | del | CGT | -NN | 6 | 1 | 0.166667 | 28236-28238 | |
ORF8 | 115 | R115del1 | del | cgT | cg- | 6 | 1 | 0.166667 | 28236-28238 | |
ORF8 | 115 | R115G | nonsyn | Cgt | Ggt | 5 | 3 | 0.6 | 28236-28238 | |
ORF8 | 115 | R115G | nonsyn | CgT | GgC | 5 | 1 | 0.2 | 28236-28238 | |
ORF8 | 115 | R115G | nonsyn | CgT | GgG | 5 | 1 | 0.2 | 28236-28238 | |
ORF8 | 115 | R115V | nonsyn | CGt | GTt | 4 | 3 | 0.75 | 28236-28238 | |
ORF8 | 115 | R115V | nonsyn | CGT | GTG | 4 | 1 | 0.25 | 28236-28238 | |
ORF8 | 115 | R115F | nonsyn | CGt | TTt | 3 | 3 | 1 | 28236-28238 | |
ORF8 | 115 | R115W | nonsyn | CgT | TgG | 2 | 2 | 1 | 28236-28238 | |
ORF8 | 115 | R115Y | nonsyn | CGt | TAt | 1 | 1 | 1 | 28236-28238 | |
ORF8 | 115 | R115X | nonsyn | CgT | TgA | 1 | 1 | 1 | 28236-28238 | |
ORF8 | 115 | R115N | nonsyn | CGT | AAC | 1 | 1 | 1 | 28236-28238 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 115 | R115C | Cgt | Tgt | 14744 | 14744 | All | 0.00282 |
ORF8 | 115 | R115C | Cgt | Tgt | 7456 | 7456 | AY.44 | 0.045383 |
ORF8 | 115 | R115C | Cgt | Tgt | 2445 | 2445 | B.1.1.7 | 0.002189 |
ORF8 | 115 | R115L | cGt | cTt | 1978 | 1982 | All | 0.000378 |
ORF8 | 115 | R115L | cGT | cTG | 2 | 1982 | All | 0 |
ORF8 | 115 | R115L | cGT | cTC | 1 | 1982 | All | 0 |
ORF8 | 115 | R115L | CGT | TTG | 1 | 1982 | All | 0 |
ORF8 | 115 | R115C | Cgt | Tgt | 1346 | 1346 | AY.91 | 0.983199 |
ORF8 | 115 | R115L | cGt | cTt | 1337 | 1338 | B.1.1.7 | 0.001197 |
ORF8 | 115 | R115L | cGT | cTC | 1 | 1338 | B.1.1.7 | 0.000001 |
ORF8 | 115 | R115H | cGt | cAt | 1130 | 1131 | All | 0.000216 |
ORF8 | 115 | R115H | cGT | cAC | 1 | 1131 | All | 0 |
ORF8 | 115 | R115C | Cgt | Tgt | 604 | 604 | AY.43 | 0.002676 |
ORF8 | 115 | R115C | Cgt | Tgt | 586 | 586 | AY.4 | 0.000912 |
ORF8 | 115 | R115H | cGt | cAt | 436 | 436 | AY.25 | 0.002622 |
ORF8 | 115 | R115C | Cgt | Tgt | 432 | 432 | AY.103 | 0.002682 |
ORF8 | 115 | R115P | cGt | cCt | 412 | 414 | All | 0.000079 |
ORF8 | 115 | R115P | cGT | cCG | 2 | 414 | All | 0 |
ORF8 | 115 | R115S | Cgt | Agt | 387 | 394 | All | 0.000074 |
ORF8 | 115 | R115S | CGt | TCt | 4 | 394 | All | 0.000001 |
ORF8 | 115 | R115S | CGT | TCG | 2 | 394 | All | 0 |
ORF8 | 115 | R115S | CgT | AgC | 1 | 394 | All | 0 |
ORF8 | 115 | R115del | CGT | --- | 386 | 386 | All | 0.000074 |
ORF8 | 115 | R115H | cGt | cAt | 382 | 382 | B.1.1.7 | 0.000342 |
ORF8 | 115 | R115P | cGt | cCt | 358 | 358 | B.1.637 | 0.02616 |
ORF8 | 115 | R115R | cgT | cgA | 201 | 355 | All | 0.000038 |
ORF8 | 115 | R115R | cgT | cgC | 135 | 355 | All | 0.000026 |
ORF8 | 115 | R115R | cgT | cgG | 19 | 355 | All | 0.000004 |
ORF8 | 115 | R115C | Cgt | Tgt | 311 | 311 | B.1.617.2 | 0.001171 |
ORF8 | 115 | R115C | Cgt | Tgt | 239 | 239 | AY.91.1 | 0.971545 |
ORF8 | 115 | R115S | Cgt | Agt | 224 | 225 | AY.44 | 0.001363 |
ORF8 | 115 | R115S | CGt | TCt | 1 | 225 | AY.44 | 0.000006 |
ORF8 | 115 | R115C | Cgt | Tgt | 218 | 218 | AY.39 | 0.005387 |
ORF8 | 115 | R115del | CGT | --- | 182 | 182 | B.1.1.7 | 0.000163 |
ORF8 | 115 | R115R | cgT | cgA | 115 | 145 | B.1.1.7 | 0.000103 |
ORF8 | 115 | R115R | cgT | cgC | 27 | 145 | B.1.1.7 | 0.000024 |
ORF8 | 115 | R115R | cgT | cgG | 3 | 145 | B.1.1.7 | 0.000003 |
ORF8 | 115 | R115C | Cgt | Tgt | 141 | 141 | AY.25 | 0.000848 |
ORF8 | 115 | R115L | cGt | cTt | 136 | 136 | B.1.2 | 0.001198 |
ORF8 | 115 | R115C | Cgt | Tgt | 93 | 93 | AY.4.2 | 0.002017 |
ORF8 | 115 | R115C | Cgt | Tgt | 87 | 87 | B.1.36.35 | 0.226562 |
ORF8 | 115 | R115S | Cgt | Agt | 69 | 71 | B.1.1.7 | 0.000062 |
ORF8 | 115 | R115S | CgT | AgC | 1 | 71 | B.1.1.7 | 0.000001 |
ORF8 | 115 | R115S | CGt | TCt | 1 | 71 | B.1.1.7 | 0.000001 |
ORF8 | 115 | R115del | CGT | --- | 57 | 57 | AY.4 | 0.000089 |
ORF8 | 115 | R115C | Cgt | Tgt | 47 | 47 | C.37 | 0.005455 |
ORF8 | 115 | R115H | cGt | cAt | 46 | 46 | AY.4 | 0.000072 |
ORF8 | 115 | R115C | Cgt | Tgt | 42 | 42 | B.1.177 | 0.000553 |
ORF8 | 115 | R115C | Cgt | Tgt | 41 | 41 | B.1.1.70 | 0.013984 |
ORF8 | 115 | R115del | CGT | --- | 38 | 38 | AY.29 | 0.000599 |
ORF8 | 115 | R115C | Cgt | Tgt | 38 | 38 | AY.3 | 0.000378 |
ORF8 | 115 | R115C | Cgt | Tgt | 38 | 38 | AY.47 | 0.001182 |
ORF8 | 115 | R115R | cgT | cgC | 31 | 36 | AY.4 | 0.000048 |
ORF8 | 115 | R115R | cgT | cgG | 3 | 36 | AY.4 | 0.000005 |
ORF8 | 115 | R115R | cgT | cgA | 2 | 36 | AY.4 | 0.000003 |
ORF8 | 115 | R115L | cGt | cTt | 34 | 34 | AY.103 | 0.000211 |
ORF8 | 115 | R115C | Cgt | Tgt | 34 | 34 | AY.23 | 0.002371 |
ORF8 | 115 | R115L | cGt | cTt | 31 | 31 | B.1 | 0.000284 |
ORF8 | 115 | R115P | cGt | cCt | 30 | 30 | B.1.1.7 | 0.000027 |
ORF8 | 115 | R115C | Cgt | Tgt | 30 | 30 | B.1.2 | 0.000264 |
ORF8 | 115 | R115H | cGt | cAt | 30 | 30 | B.1.617.2 | 0.000113 |
ORF8 | 115 | R115L | cGt | cTt | 29 | 29 | AY.4 | 0.000045 |
ORF8 | 115 | R115C | Cgt | Tgt | 29 | 29 | B.1 | 0.000266 |
ORF8 | 115 | R115L | cGt | cTt | 27 | 27 | B.1.1 | 0.00049 |
ORF8 | 115 | R115C | Cgt | Tgt | 27 | 27 | Q.8 | 0.004453 |
ORF8 | 115 | R115L | cGt | cTt | 26 | 26 | P.1 | 0.00041 |
ORF8 | 115 | R115L | cGt | cTt | 25 | 25 | AY.25 | 0.00015 |
ORF8 | 115 | R115S | Cgt | Agt | 23 | 23 | AY.103 | 0.000143 |
ORF8 | 115 | R115C | Cgt | Tgt | 21 | 21 | AY.29 | 0.000331 |
ORF8 | 115 | R115L | cGt | cTt | 21 | 21 | B.1.367 | 0.01664 |
ORF8 | 115 | R115L | cGt | cTt | 20 | 20 | B.1.258.7 | 0.038241 |
ORF8 | 115 | R115C | Cgt | Tgt | 20 | 20 | Q.1 | 0.002527 |
ORF8 | 115 | R115C | Cgt | Tgt | 19 | 19 | B.1.1.519 | 0.000755 |
ORF8 | 115 | R115C | Cgt | Tgt | 19 | 19 | B.1.160 | 0.000593 |
ORF8 | 115 | R115H | cGt | cAt | 18 | 18 | AY.39 | 0.000445 |
ORF8 | 115 | R115H | cGt | cAt | 18 | 18 | B.1.2 | 0.000158 |
ORF8 | 115 | R115C | Cgt | Tgt | 17 | 17 | B.1.1 | 0.000308 |
ORF8 | 115 | R115H | cGt | cAt | 16 | 16 | AY.54 | 0.001526 |
ORF8 | 115 | R115L | cGt | cTt | 15 | 15 | AY.26 | 0.000425 |
ORF8 | 115 | R115L | cGt | cTt | 15 | 15 | AY.43 | 0.000066 |
ORF8 | 115 | R115C | Cgt | Tgt | 15 | 15 | B.1.429 | 0.000353 |
ORF8 | 115 | R115H | cGt | cAt | 14 | 14 | AY.44 | 0.000085 |
ORF8 | 115 | R115del | CGT | --- | 14 | 14 | AY.47 | 0.000435 |
ORF8 | 115 | R115L | cGt | cTt | 14 | 14 | B.1.617.2 | 0.000053 |
ORF8 | 115 | R115C | Cgt | Tgt | 13 | 13 | B.1.1.284 | 0.001396 |
ORF8 | 115 | R115H | cGt | cAt | 13 | 13 | B.1.177 | 0.000171 |
ORF8 | 115 | R115C | Cgt | Tgt | 13 | 13 | B.1.221 | 0.000923 |
ORF8 | 115 | R115R | cgT | cgC | 11 | 13 | B.1.617.2 | 0.000041 |
ORF8 | 115 | R115R | cgT | cgA | 2 | 13 | B.1.617.2 | 0.000008 |
ORF8 | 115 | R115C | Cgt | Tgt | 12 | 12 | AY.118 | 0.000752 |
ORF8 | 115 | R115S | Cgt | Agt | 12 | 12 | AY.4 | 0.000019 |
ORF8 | 115 | R115R | cgT | cgC | 12 | 12 | B.1.1.1 | 0.00392 |
ORF8 | 115 | R115C | Cgt | Tgt | 11 | 11 | AY.120 | 0.000409 |
ORF8 | 115 | R115C | Cgt | Tgt | 11 | 11 | AY.5.3 | 0.003711 |
ORF8 | 115 | R115H | cGt | cAt | 11 | 11 | AY.9 | 0.000744 |
ORF8 | 115 | R115L | cGt | cTt | 11 | 11 | B.1.1.519 | 0.000437 |
ORF8 | 115 | R115R | cgT | cgC | 8 | 11 | B.1.2 | 0.00007 |
ORF8 | 115 | R115R | cgT | cgA | 3 | 11 | B.1.2 | 0.000026 |
ORF8 | 115 | R115C | Cgt | Tgt | 11 | 11 | P.1 | 0.000173 |
ORF8 | 115 | R115L | cGt | cTt | 10 | 10 | AY.119 | 0.000353 |
ORF8 | 115 | R115L | cGt | cTt | 10 | 10 | B.1.235 | 0.025189 |
ORF8 | 115 | R115L | cGt | cTt | 10 | 10 | B.1.351 | 0.000297 |
ORF8 | 115 | R115L | cGt | cTt | 10 | 10 | B.1.596 | 0.000871 |
ORF8 | 115 | R115C | Cgt | Tgt | 10 | 10 | B.1.76 | 0.113636 |
ORF8 | 115 | R115C | Cgt | Tgt | 10 | 10 | Q.3 | 0.00145 |
ORF8 | 115 | R115L | cGt | cTt | 9 | 9 | AY.44 | 0.000055 |
ORF8 | 115 | R115L | cGt | cTt | 9 | 9 | AY.47 | 0.00028 |
ORF8 | 115 | R115C | Cgt | Tgt | 9 | 9 | B.1.526 | 0.000212 |
ORF8 | 115 | R115C | Cgt | Tgt | 9 | 9 | R.1 | 0.00081 |
ORF8 | 115 | R115D | CGt | GAt | 7 | 8 | All | 0.000001 |
ORF8 | 115 | R115D | CGT | GAC | 1 | 8 | All | 0 |
ORF8 | 115 | R115C | Cgt | Tgt | 8 | 8 | AY.117 | 0.000676 |
ORF8 | 115 | R115R | cgT | cgA | 7 | 8 | AY.61 | 0.000733 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 8 | AY.61 | 0.000105 |
ORF8 | 115 | R115S | Cgt | Agt | 8 | 8 | B.1 | 0.000073 |
ORF8 | 115 | R115L | cGt | cTt | 8 | 8 | B.1.177 | 0.000105 |
ORF8 | 115 | R115C | Cgt | Tgt | 8 | 8 | B.1.243 | 0.000557 |
ORF8 | 115 | R115H | cGt | cAt | 8 | 8 | B.1.499 | 0.008403 |
ORF8 | 115 | R115S | Cgt | Agt | 8 | 8 | B.1.617.2 | 0.00003 |
ORF8 | 115 | R115C | Cgt | Tgt | 7 | 7 | A.2.5 | 0.003493 |
ORF8 | 115 | R115del2 | CGt | --t | 4 | 7 | All | 0.000001 |
ORF8 | 115 | R115del2 | cGT | c-- | 3 | 7 | All | 0.000001 |
ORF8 | 115 | R115R | cgT | cgC | 7 | 7 | AY.103 | 0.000043 |
ORF8 | 115 | R115C | Cgt | Tgt | 7 | 7 | AY.45 | 0.000852 |
ORF8 | 115 | R115H | cGt | cAt | 7 | 7 | B.1.1.232 | 0.012704 |
ORF8 | 115 | R115H | cGt | cAt | 7 | 7 | B.1.160 | 0.000218 |
ORF8 | 115 | R115L | cGt | cTt | 7 | 7 | B.1.221 | 0.000497 |
ORF8 | 115 | R115del | CGT | --- | 7 | 7 | B.1.36.16 | 0.009972 |
ORF8 | 115 | R115del | CGT | --- | 7 | 7 | B.1.617.2 | 0.000026 |
ORF8 | 115 | R115H | cGt | cAt | 7 | 7 | B.1.621 | 0.00062 |
ORF8 | 115 | R115del1 | Cgt | -gt | 2 | 6 | All | 0 |
ORF8 | 115 | R115del1 | CGT | -NN | 1 | 6 | All | 0 |
ORF8 | 115 | R115del1 | CgT | -gN | 1 | 6 | All | 0 |
ORF8 | 115 | R115del1 | cGt | c-t | 1 | 6 | All | 0 |
ORF8 | 115 | R115del1 | cgT | cg- | 1 | 6 | All | 0 |
ORF8 | 115 | R115R | cgT | cgA | 6 | 6 | AY.30 | 0.002374 |
ORF8 | 115 | R115R | cgT | cgA | 5 | 6 | AY.43 | 0.000022 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 6 | AY.43 | 0.000004 |
ORF8 | 115 | R115C | Cgt | Tgt | 6 | 6 | AY.6 | 0.000247 |
ORF8 | 115 | R115C | Cgt | Tgt | 6 | 6 | AY.75 | 0.000336 |
ORF8 | 115 | R115del | CGT | --- | 6 | 6 | AY.91 | 0.004383 |
ORF8 | 115 | R115del | CGT | --- | 6 | 6 | B.1.1.265 | 0.018927 |
ORF8 | 115 | R115R | cgT | cgC | 6 | 6 | B.1.1.528 | 0.028846 |
ORF8 | 115 | R115H | cGt | cAt | 6 | 6 | B.1.243 | 0.000418 |
ORF8 | 115 | R115H | cGt | cAt | 6 | 6 | B.1.258 | 0.000399 |
ORF8 | 115 | R115C | Cgt | Tgt | 6 | 6 | B.1.258.17 | 0.000624 |
ORF8 | 115 | R115H | cGt | cAt | 6 | 6 | P.1.7 | 0.001916 |
ORF8 | 115 | R115G | Cgt | Ggt | 3 | 5 | All | 0.000001 |
ORF8 | 115 | R115G | CgT | GgC | 1 | 5 | All | 0 |
ORF8 | 115 | R115G | CgT | GgG | 1 | 5 | All | 0 |
ORF8 | 115 | R115H | cGt | cAt | 5 | 5 | AY.103 | 0.000031 |
ORF8 | 115 | R115C | Cgt | Tgt | 5 | 5 | AY.113 | 0.000712 |
ORF8 | 115 | R115C | Cgt | Tgt | 5 | 5 | AY.119 | 0.000177 |
ORF8 | 115 | R115C | Cgt | Tgt | 5 | 5 | AY.26 | 0.000142 |
ORF8 | 115 | R115del | CGT | --- | 5 | 5 | AY.29.1 | 0.001103 |
ORF8 | 115 | R115S | Cgt | Agt | 5 | 5 | AY.3 | 0.00005 |
ORF8 | 115 | R115H | cGt | cAt | 5 | 5 | AY.35 | 0.001165 |
ORF8 | 115 | R115R | cgT | cgA | 4 | 5 | B.1 | 0.000037 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 5 | B.1 | 0.000009 |
ORF8 | 115 | R115H | cGt | cAt | 5 | 5 | B.1.1 | 0.000091 |
ORF8 | 115 | R115R | cgT | cgA | 3 | 5 | B.1.1 | 0.000054 |
ORF8 | 115 | R115R | cgT | cgC | 2 | 5 | B.1.1 | 0.000036 |
ORF8 | 115 | R115L | cGt | cTt | 5 | 5 | B.1.160 | 0.000156 |
ORF8 | 115 | R115L | cGt | cTt | 5 | 5 | B.1.258 | 0.000333 |
ORF8 | 115 | R115R | cgT | cgG | 5 | 5 | B.1.258.14 | 0.004902 |
ORF8 | 115 | R115S | Cgt | Agt | 5 | 5 | B.1.429 | 0.000118 |
ORF8 | 115 | R115L | cGt | cTt | 5 | 5 | B.1.526 | 0.000118 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | A.1 | 0.001127 |
ORF8 | 115 | R115V | CGt | GTt | 3 | 4 | All | 0.000001 |
ORF8 | 115 | R115V | CGT | GTG | 1 | 4 | All | 0 |
ORF8 | 115 | R115C | Cgt | Tgt | 4 | 4 | AY.111 | 0.000733 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | AY.20 | 0.000155 |
ORF8 | 115 | R115H | cGt | cAt | 4 | 4 | AY.3 | 0.00004 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | AY.3 | 0.00004 |
ORF8 | 115 | R115C | Cgt | Tgt | 4 | 4 | AY.34.1 | 0.00204 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | AY.4.2 | 0.000087 |
ORF8 | 115 | R115S | Cgt | Agt | 4 | 4 | AY.43 | 0.000018 |
ORF8 | 115 | R115R | cgT | cgC | 4 | 4 | AY.44 | 0.000024 |
ORF8 | 115 | R115H | cGt | cAt | 4 | 4 | AY.47 | 0.000124 |
ORF8 | 115 | R115C | Cgt | Tgt | 4 | 4 | AY.5 | 0.000083 |
ORF8 | 115 | R115R | cgT | cgA | 4 | 4 | AY.85 | 0.001709 |
ORF8 | 115 | R115H | cGt | cAt | 4 | 4 | B.1 | 0.000037 |
ORF8 | 115 | R115P | cGt | cCt | 4 | 4 | B.1 | 0.000037 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | B.1.1.1 | 0.001307 |
ORF8 | 115 | R115H | cGt | cAt | 4 | 4 | B.1.1.294 | 0.005063 |
ORF8 | 115 | R115del2 | CGt | --t | 3 | 4 | B.1.1.7 | 0.000003 |
ORF8 | 115 | R115del2 | cGT | c-- | 1 | 4 | B.1.1.7 | 0.000001 |
ORF8 | 115 | R115C | Cgt | Tgt | 4 | 4 | B.1.258 | 0.000266 |
ORF8 | 115 | R115R | cgT | cgA | 3 | 4 | B.1.258 | 0.0002 |
ORF8 | 115 | R115R | cgT | cgG | 1 | 4 | B.1.258 | 0.000067 |
ORF8 | 115 | R115C | Cgt | Tgt | 4 | 4 | B.1.361 | 0.005155 |
ORF8 | 115 | R115C | Cgt | Tgt | 4 | 4 | B.1.427 | 0.000202 |
ORF8 | 115 | R115P | cGt | cCt | 2 | 4 | B.1.427 | 0.000101 |
ORF8 | 115 | R115S | CGt | TCt | 2 | 4 | B.1.427 | 0.000101 |
ORF8 | 115 | R115S | CGT | TCG | 2 | 4 | B.1.427 | 0.000101 |
ORF8 | 115 | R115P | cGT | cCG | 2 | 4 | B.1.427 | 0.000101 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | B.1.438.1 | 0.000429 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | B.1.525 | 0.000453 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | B.1.609 | 0.001918 |
ORF8 | 115 | R115R | cgT | cgC | 2 | 4 | B.1.637 | 0.000146 |
ORF8 | 115 | R115R | cgT | cgA | 2 | 4 | B.1.637 | 0.000146 |
ORF8 | 115 | R115H | cGt | cAt | 4 | 4 | P.1 | 0.000063 |
ORF8 | 115 | R115del | CGT | --- | 4 | 4 | P.1 | 0.000063 |
ORF8 | 115 | R115del | CGT | --- | 4 | 4 | P.1.1 | 0.001271 |
ORF8 | 115 | R115L | cGt | cTt | 4 | 4 | P.1.17 | 0.000647 |
ORF8 | 115 | R115C | Cgt | Tgt | 4 | 4 | Q.2 | 0.002454 |
ORF8 | 115 | R115F | CGt | TTt | 3 | 3 | All | 0.000001 |
ORF8 | 115 | R115R | cgT | cgC | 3 | 3 | AY.102 | 0.00008 |
ORF8 | 115 | R115C | Cgt | Tgt | 3 | 3 | AY.102 | 0.00008 |
ORF8 | 115 | R115H | cGt | cAt | 3 | 3 | AY.102 | 0.00008 |
ORF8 | 115 | R115del | CGT | --- | 3 | 3 | AY.102 | 0.00008 |
ORF8 | 115 | R115D | CGt | GAt | 3 | 3 | AY.103 | 0.000019 |
ORF8 | 115 | R115C | Cgt | Tgt | 3 | 3 | AY.16 | 0.001139 |
ORF8 | 115 | R115C | Cgt | Tgt | 3 | 3 | AY.34 | 0.000291 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | AY.39 | 0.000074 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | AY.42 | 0.000121 |
ORF8 | 115 | R115C | Cgt | Tgt | 3 | 3 | AY.42 | 0.000121 |
ORF8 | 115 | R115H | cGt | cAt | 3 | 3 | AY.43 | 0.000013 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | AY.5 | 0.000062 |
ORF8 | 115 | R115C | Cgt | Tgt | 3 | 3 | AY.59 | 0.001589 |
ORF8 | 115 | R115C | Cgt | Tgt | 3 | 3 | AY.70 | 0.000626 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | AY.74 | 0.000347 |
ORF8 | 115 | R115H | cGt | cAt | 3 | 3 | AY.9.2 | 0.00011 |
ORF8 | 115 | R115S | Cgt | Agt | 3 | 3 | AY.91 | 0.002191 |
ORF8 | 115 | R115C | Cgt | Tgt | 3 | 3 | AY.93 | 0.000819 |
ORF8 | 115 | R115R | cgT | cgC | 2 | 3 | AY.98 | 0.000158 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 3 | AY.98 | 0.000079 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | B | 0.000383 |
ORF8 | 115 | R115C | Cgt | Tgt | 3 | 3 | B.1.1.216 | 0.002671 |
ORF8 | 115 | R115P | cGt | cCt | 3 | 3 | B.1.1.222 | 0.000612 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | B.1.1.271 | 0.166667 |
ORF8 | 115 | R115del | CGT | --- | 3 | 3 | B.1.1.519 | 0.000119 |
ORF8 | 115 | R115C | Cgt | Tgt | 3 | 3 | B.1.1.63 | 0.001157 |
ORF8 | 115 | R115D | CGt | GAt | 3 | 3 | B.1.1.7 | 0.000003 |
ORF8 | 115 | R115C | Cgt | Tgt | 3 | 3 | B.1.177.58 | 0.003995 |
ORF8 | 115 | R115R | cgT | cgA | 3 | 3 | B.1.221 | 0.000213 |
ORF8 | 115 | R115del | CGT | --- | 3 | 3 | B.1.243 | 0.000209 |
ORF8 | 115 | R115R | cgT | cgA | 3 | 3 | B.1.281 | 0.065217 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | B.1.311 | 0.000824 |
ORF8 | 115 | R115C | Cgt | Tgt | 3 | 3 | B.1.351 | 0.000089 |
ORF8 | 115 | R115R | cgT | cgA | 3 | 3 | B.1.36 | 0.000438 |
ORF8 | 115 | R115C | Cgt | Tgt | 3 | 3 | B.1.36.8 | 0.003 |
ORF8 | 115 | R115R | cgT | cgG | 3 | 3 | B.1.427 | 0.000151 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 3 | B.1.427 | 0.000101 |
ORF8 | 115 | R115L | cGT | cTG | 1 | 3 | B.1.427 | 0.00005 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 3 | B.1.429 | 0.000024 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 3 | B.1.429 | 0.000024 |
ORF8 | 115 | R115R | cgT | cgG | 1 | 3 | B.1.429 | 0.000024 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | B.1.466.2 | 0.001174 |
ORF8 | 115 | R115C | Cgt | Tgt | 3 | 3 | B.1.621 | 0.000266 |
ORF8 | 115 | R115C | Cgt | Tgt | 3 | 3 | B.1.637 | 0.000219 |
ORF8 | 115 | R115R | cgT | cgA | 3 | 3 | C.36.3 | 0.001702 |
ORF8 | 115 | R115L | cGt | cTt | 3 | 3 | C.37 | 0.000348 |
ORF8 | 115 | R115P | cGt | cCt | 3 | 3 | P.1 | 0.000047 |
ORF8 | 115 | R115S | Cgt | Agt | 3 | 3 | P.1 | 0.000047 |
ORF8 | 115 | R115R | cgT | cgA | 2 | 2 | 0.111111 | |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | A.2.4 | 0.006734 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | A.21 | 0.00554 |
ORF8 | 115 | R115R | cgT | cgA | 2 | 2 | AE.6 | 0.076923 |
ORF8 | 115 | R115W | CgT | TgG | 2 | 2 | All | 0 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | AY.100 | 0.000092 |
ORF8 | 115 | R115S | Cgt | Agt | 2 | 2 | AY.102 | 0.000053 |
ORF8 | 115 | R115H | cGt | cAt | 2 | 2 | AY.11 | 0.002677 |
ORF8 | 115 | R115del | CGT | --- | 2 | 2 | AY.118 | 0.000125 |
ORF8 | 115 | R115H | cGt | cAt | 2 | 2 | AY.121 | 0.000271 |
ORF8 | 115 | R115H | cGt | cAt | 2 | 2 | AY.20 | 0.000078 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | AY.20 | 0.000078 |
ORF8 | 115 | R115R | cgT | cgC | 2 | 2 | AY.25 | 0.000012 |
ORF8 | 115 | R115R | cgT | cgC | 2 | 2 | AY.26 | 0.000057 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | AY.36 | 0.000296 |
ORF8 | 115 | R115del | CGT | --- | 2 | 2 | AY.4.2 | 0.000043 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | AY.4.3 | 0.001684 |
ORF8 | 115 | R115del | CGT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF8 | 115 | R115P | cGt | cCt | 2 | 2 | AY.43 | 0.000009 |
ORF8 | 115 | R115H | cGt | cAt | 2 | 2 | AY.46 | 0.000208 |
ORF8 | 115 | R115S | Cgt | Agt | 2 | 2 | AY.47 | 0.000062 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | AY.48 | 0.00093 |
ORF8 | 115 | R115del | CGT | --- | 2 | 2 | AY.48 | 0.00093 |
ORF8 | 115 | R115R | cgT | cgA | 2 | 2 | AY.55 | 0.001835 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | AY.6 | 0.000082 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | AY.61 | 0.00021 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | AY.62 | 0.000871 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 2 | AY.62 | 0.000436 |
ORF8 | 115 | R115G | Cgt | Ggt | 1 | 2 | AY.62 | 0.000436 |
ORF8 | 115 | R115G | CgT | GgC | 1 | 2 | AY.62 | 0.000436 |
ORF8 | 115 | R115D | CGT | GAC | 1 | 2 | AY.62 | 0.000436 |
ORF8 | 115 | R115H | cGT | cAC | 1 | 2 | AY.62 | 0.000436 |
ORF8 | 115 | R115D | CGt | GAt | 1 | 2 | AY.62 | 0.000436 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | AY.63 | 0.000774 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | AY.7.1 | 0.000225 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | AY.92 | 0.000575 |
ORF8 | 115 | R115H | cGt | cAt | 2 | 2 | AY.98 | 0.000158 |
ORF8 | 115 | R115P | cGt | cCt | 2 | 2 | AY.98.1 | 0.000097 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | AY.99.2 | 0.000184 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | AZ.3 | 0.00304 |
ORF8 | 115 | R115del | CGT | --- | 2 | 2 | B.1 | 0.000018 |
ORF8 | 115 | R115del | CGT | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | B.1.1.135 | 0.00939 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF8 | 115 | R115V | CGt | GTt | 2 | 2 | B.1.1.265 | 0.006309 |
ORF8 | 115 | R115R | cgT | cgA | 2 | 2 | B.1.1.28 | 0.000622 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | B.1.1.348 | 0.001592 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | B.1.1.464 | 0.002946 |
ORF8 | 115 | R115H | cGt | cAt | 2 | 2 | B.1.1.83 | 0.00542 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | B.1.126 | 0.002551 |
ORF8 | 115 | R115del | CGT | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF8 | 115 | R115del | CGT | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.177.24 | 0.002591 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | B.1.177.77 | 0.001452 |
ORF8 | 115 | R115R | cgT | cgA | 2 | 2 | B.1.177.83 | 0.002963 |
ORF8 | 115 | R115del | CGT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.22 | 0.002635 |
ORF8 | 115 | R115H | cGt | cAt | 2 | 2 | B.1.221 | 0.000142 |
ORF8 | 115 | R115H | cGt | cAt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF8 | 115 | R115del | CGT | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.369 | 0.00057 |
ORF8 | 115 | R115H | cGt | cAt | 2 | 2 | B.1.375 | 0.001639 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.389 | 0.002004 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | B.1.409 | 0.001563 |
ORF8 | 115 | R115W | CgT | TgG | 2 | 2 | B.1.427 | 0.000101 |
ORF8 | 115 | R115G | CgT | GgG | 1 | 2 | B.1.427 | 0.00005 |
ORF8 | 115 | R115G | Cgt | Ggt | 1 | 2 | B.1.427 | 0.00005 |
ORF8 | 115 | R115V | CGT | GTG | 1 | 2 | B.1.427 | 0.00005 |
ORF8 | 115 | R115V | CGt | GTt | 1 | 2 | B.1.427 | 0.00005 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | B.1.466.2 | 0.000782 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.499 | 0.002101 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.505 | 0.008772 |
ORF8 | 115 | R115S | Cgt | Agt | 2 | 2 | B.1.525 | 0.000226 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | B.1.576 | 0.001813 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | B.1.621 | 0.000177 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | C.36.3 | 0.001134 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | C.37.1 | 0.005236 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | P.1.14 | 0.000096 |
ORF8 | 115 | R115R | cgT | cgA | 2 | 2 | P.1.15 | 0.000465 |
ORF8 | 115 | R115S | Cgt | Agt | 2 | 2 | P.1.2 | 0.002312 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | P.1.7 | 0.000639 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | P.4 | 0.007605 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | Q.3 | 0.00029 |
ORF8 | 115 | R115C | Cgt | Tgt | 2 | 2 | Q.7 | 0.002222 |
ORF8 | 115 | R115L | cGt | cTt | 2 | 2 | Q.8 | 0.00033 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | A | 0.000387 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | A | 0.000387 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | A.2 | 0.000662 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | A.2.2 | 0.001689 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | AE.2 | 0.058824 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | AE.4 | 0.043478 |
ORF8 | 115 | R115N | CGT | AAC | 1 | 1 | All | 0 |
ORF8 | 115 | R115Y | CGt | TAt | 1 | 1 | All | 0 |
ORF8 | 115 | R115X | CgT | TgA | 1 | 1 | All | 0 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.100 | 0.000046 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.100 | 0.000046 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.101 | 0.00049 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.105 | 0.000643 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.106 | 0.000335 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.107 | 0.000466 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.110 | 0.000113 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.111 | 0.000183 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.116.1 | 0.000311 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | AY.117 | 0.000085 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.119 | 0.000035 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.12 | 0.000316 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.12 | 0.000316 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.13 | 0.000161 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | AY.14 | 0.000088 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.14 | 0.000088 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.19 | 0.00114 |
ORF8 | 115 | R115del1 | CGT | -NN | 1 | 1 | AY.20 | 0.000039 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.23 | 0.00007 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | AY.23 | 0.00007 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.23.1 | 0.000417 |
ORF8 | 115 | R115Y | CGt | TAt | 1 | 1 | AY.25 | 0.000006 |
ORF8 | 115 | R115P | cGt | cCt | 1 | 1 | AY.25 | 0.000006 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.26 | 0.000028 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | AY.26 | 0.000028 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.27 | 0.000065 |
ORF8 | 115 | R115P | cGt | cCt | 1 | 1 | AY.29 | 0.000016 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.29 | 0.000016 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.3.1 | 0.000085 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 1 | AY.3.1 | 0.000085 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.33 | 0.000067 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.33 | 0.000067 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | AY.34 | 0.000097 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.34.1 | 0.00051 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.39.1 | 0.00004 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.39.1.1 | 0.000725 |
ORF8 | 115 | R115P | cGt | cCt | 1 | 1 | AY.4 | 0.000002 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | AY.4.2 | 0.000022 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF8 | 115 | R115del2 | cGT | c-- | 1 | 1 | AY.43 | 0.000004 |
ORF8 | 115 | R115del1 | CgT | -gN | 1 | 1 | AY.43 | 0.000004 |
ORF8 | 115 | R115del1 | cGt | c-t | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 115 | R115P | cGt | cCt | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.46 | 0.000104 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | AY.46 | 0.000104 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.46.4 | 0.000165 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.46.6 | 0.000072 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | AY.46.6 | 0.000072 |
ORF8 | 115 | R115del1 | cgT | cg- | 1 | 1 | AY.47 | 0.000031 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | AY.5 | 0.000021 |
ORF8 | 115 | R115R | cgT | cgG | 1 | 1 | AY.5 | 0.000021 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.5.1 | 0.003759 |
ORF8 | 115 | R115G | Cgt | Ggt | 1 | 1 | AY.5.3 | 0.000337 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | AY.5.3 | 0.000337 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.5.4 | 0.000277 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.54 | 0.000095 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.55 | 0.000917 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.55 | 0.000917 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.59 | 0.00053 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.61 | 0.000105 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 1 | AY.62 | 0.000436 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | AY.7.2 | 0.000559 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.7.2 | 0.000559 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.73 | 0.000665 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 1 | AY.75.1 | 0.00018 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.75.1 | 0.00018 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.76 | 0.004831 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.8 | 0.000606 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.81 | 0.001992 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.84 | 0.000437 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.84 | 0.000437 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.88 | 0.000884 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.9.1 | 0.000084 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.9.1 | 0.000084 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.9.1 | 0.000084 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | AY.9.2 | 0.000037 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | AY.95 | 0.000761 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.96 | 0.002075 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | AY.98 | 0.000079 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AY.98.1 | 0.000048 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | AY.98.1 | 0.000048 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AY.99.1 | 0.001553 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 1 | AY.99.2 | 0.000092 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AZ.1 | 0.000867 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AZ.2 | 0.000821 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | AZ.2 | 0.000821 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | AZ.2 | 0.000821 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | AZ.6 | 0.008403 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | B | 0.000128 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B | 0.000128 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.132 | 0.014925 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | B.1.1.202 | 0.076923 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | B.1.1.210 | 0.005714 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 1 | B.1.1.222 | 0.000204 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.1.28 | 0.000311 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | B.1.1.294 | 0.001266 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.298 | 0.000862 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.1.302 | 0.002075 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.307 | 0.002532 |
ORF8 | 115 | R115L | cGT | cTG | 1 | 1 | B.1.1.315 | 0.008475 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | B.1.1.316 | 0.000925 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.326 | 0.001761 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF8 | 115 | R115R | cgT | cgG | 1 | 1 | B.1.1.354 | 0.004386 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.373 | 0.02381 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | B.1.1.396 | 0.045455 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | B.1.1.398 | 0.003226 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.411 | 0.014706 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | B.1.1.413 | 0.006897 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.1.426 | 0.035714 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.1.46 | 0.004367 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | B.1.1.519 | 0.00004 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF8 | 115 | R115P | cGt | cCt | 1 | 1 | B.1.1.524 | 0.020833 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.1.54 | 0.003021 |
ORF8 | 115 | R115del1 | Cgt | -gt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF8 | 115 | R115X | CgT | TgA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.1.89 | 0.006061 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.112 | 0.005181 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.120 | 0.007692 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF8 | 115 | R115del2 | cGT | c-- | 1 | 1 | B.1.177.44 | 0.000519 |
ORF8 | 115 | R115F | CGt | TTt | 1 | 1 | B.1.177.63 | 0.002703 |
ORF8 | 115 | R115del2 | CGt | --t | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 115 | R115L | CGT | TTG | 1 | 1 | B.1.177.73 | 0.000566 |
ORF8 | 115 | R115F | CGt | TTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.177.8 | 0.000752 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | B.1.177.81 | 0.000189 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.177.89 | 0.02439 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.179 | 0.003759 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | B.1.195 | 0.005025 |
ORF8 | 115 | R115P | cGt | cCt | 1 | 1 | B.1.2 | 0.000009 |
ORF8 | 115 | R115F | CGt | TTt | 1 | 1 | B.1.2 | 0.000009 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.213 | 0.014925 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.214 | 0.003663 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.214.1 | 0.02 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.214.2 | 0.0006 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.234 | 0.000132 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.240 | 0.000216 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.258.11 | 0.000396 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | B.1.301 | 0.005917 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.320 | 0.001245 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.349 | 0.000715 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.36 | 0.000146 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | B.1.36 | 0.000146 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | B.1.36.31 | 0.001751 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | B.1.367 | 0.000792 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.400 | 0.000429 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.400 | 0.000429 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.409 | 0.000781 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | B.1.427 | 0.00005 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF8 | 115 | R115P | cGt | cCt | 1 | 1 | B.1.429 | 0.000024 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.429 | 0.000024 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.44 | 0.008333 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 1 | B.1.452 | 0.013699 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.470 | 0.001404 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | B.1.471 | 0.002732 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.517 | 0.000427 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | B.1.526 | 0.000024 |
ORF8 | 115 | R115P | cGt | cCt | 1 | 1 | B.1.526 | 0.000024 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | B.1.526 | 0.000024 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | B.1.526 | 0.000024 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.551 | 0.00129 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.558 | 0.004566 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | B.1.576 | 0.000907 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.576 | 0.000907 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.577 | 0.000687 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | B.1.580 | 0.004065 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.587 | 0.001898 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 1 | B.1.589 | 0.007576 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.612 | 0.002653 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF8 | 115 | R115N | CGT | AAC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | B.1.618 | 0.004032 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.619.1 | 0.000641 |
ORF8 | 115 | R115R | cgT | cgG | 1 | 1 | B.1.623 | 0.000536 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | B.1.623 | 0.000536 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.627 | 0.00202 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | B.1.627 | 0.00202 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.1.628 | 0.000352 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.1.628 | 0.000352 |
ORF8 | 115 | R115S | Cgt | Agt | 1 | 1 | B.1.637 | 0.000073 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | B.40 | 0.000364 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | B.40 | 0.000364 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | B.60 | 0.015873 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | C.16 | 0.00106 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | C.23 | 0.005814 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | C.26 | 0.007353 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | C.37 | 0.000116 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | C.37 | 0.000116 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | C.7 | 0.034483 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | D.2 | 0.000075 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | D.2 | 0.000075 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 1 | D.2 | 0.000075 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | N.3 | 0.005814 |
ORF8 | 115 | R115R | cgT | cgC | 1 | 1 | P.1 | 0.000016 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | P.1.14 | 0.000048 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | P.1.17 | 0.000162 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | P.1.17.1 | 0.000875 |
ORF8 | 115 | R115R | cgT | cgA | 1 | 1 | P.2 | 0.000187 |
ORF8 | 115 | R115del1 | Cgt | -gt | 1 | 1 | Q.2 | 0.000613 |
ORF8 | 115 | R115L | cGt | cTt | 1 | 1 | Q.4 | 0.000455 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | Q.4 | 0.000455 |
ORF8 | 115 | R115H | cGt | cAt | 1 | 1 | Q.8 | 0.000165 |
ORF8 | 115 | R115del | CGT | --- | 1 | 1 | Q.8 | 0.000165 |
ORF8 | 115 | R115C | Cgt | Tgt | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|