CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 113 | D113D | syn | gaC | gaT | 1395 | 1395 | 1 | 28230-28232 | |
ORF8 | 113 | D113del | del | GAC | --- | 456 | 456 | 1 | 28230-28232 | |
ORF8 | 113 | D113Y | nonsyn | Gac | Tac | 397 | 397 | 1 | 28230-28232 | |
ORF8 | 113 | D113V | nonsyn | gAc | gTc | 63 | 56 | 0.888889 | 28230-28232 | |
ORF8 | 113 | D113V | nonsyn | gAC | gTT | 63 | 4 | 0.0634921 | 28230-28232 | |
ORF8 | 113 | D113V | nonsyn | gAC | gTA | 63 | 3 | 0.047619 | 28230-28232 | |
ORF8 | 113 | D113G | nonsyn | gAc | gGc | 44 | 41 | 0.931818 | 28230-28232 | |
ORF8 | 113 | D113G | nonsyn | gAC | gGA | 44 | 2 | 0.0454545 | 28230-28232 | |
ORF8 | 113 | D113G | nonsyn | gAC | gGT | 44 | 1 | 0.0227273 | 28230-28232 | |
ORF8 | 113 | D113N | nonsyn | Gac | Aac | 30 | 30 | 1 | 28230-28232 | |
ORF8 | 113 | D113del1 | del | Gac | -ac | 28 | 24 | 0.857143 | 28230-28232 | |
ORF8 | 113 | D113del1 | del | gaC | ga- | 28 | 4 | 0.142857 | 28230-28232 | |
ORF8 | 113 | D113H | nonsyn | Gac | Cac | 25 | 25 | 1 | 28230-28232 | |
ORF8 | 113 | D113E | nonsyn | gaC | gaA | 17 | 16 | 0.941176 | 28230-28232 | |
ORF8 | 113 | D113E | nonsyn | gaC | gaG | 17 | 1 | 0.0588235 | 28230-28232 | |
ORF8 | 113 | D113A | nonsyn | gAc | gCc | 15 | 13 | 0.866667 | 28230-28232 | |
ORF8 | 113 | D113A | nonsyn | gAC | gCT | 15 | 1 | 0.0666667 | 28230-28232 | |
ORF8 | 113 | D113A | nonsyn | gAC | gCG | 15 | 1 | 0.0666667 | 28230-28232 | |
ORF8 | 113 | D113del2 | del | gAC | g-- | 5 | 5 | 1 | 28230-28232 | |
ORF8 | 113 | D113F | nonsyn | GAc | TTc | 4 | 2 | 0.5 | 28230-28232 | |
ORF8 | 113 | D113F | nonsyn | GAC | TTT | 4 | 2 | 0.5 | 28230-28232 | |
ORF8 | 113 | D113X | nonsyn | GaC | TaA | 4 | 2 | 0.5 | 28230-28232 | |
ORF8 | 113 | D113X | nonsyn | GAC | TGA | 4 | 2 | 0.5 | 28230-28232 | |
ORF8 | 113 | D113L | nonsyn | GAC | TTA | 2 | 2 | 1 | 28230-28232 | |
ORF8 | 113 | D113C | nonsyn | GAc | TGc | 2 | 2 | 1 | 28230-28232 | |
ORF8 | 113 | D113T | nonsyn | GAc | ACc | 2 | 1 | 0.5 | 28230-28232 | |
ORF8 | 113 | D113T | nonsyn | GAC | ACG | 2 | 1 | 0.5 | 28230-28232 | |
ORF8 | 113 | D113K | nonsyn | GaC | AaG | 1 | 1 | 1 | 28230-28232 | |
ORF8 | 113 | D113R | nonsyn | GAC | AGA | 1 | 1 | 1 | 28230-28232 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 113 | D113D | gaC | gaT | 1395 | 1395 | All | 0.000267 |
ORF8 | 113 | D113del | GAC | --- | 456 | 456 | All | 0.000087 |
ORF8 | 113 | D113D | gaC | gaT | 439 | 439 | B.1.1.7 | 0.000393 |
ORF8 | 113 | D113Y | Gac | Tac | 397 | 397 | All | 0.000076 |
ORF8 | 113 | D113D | gaC | gaT | 240 | 240 | B.1.1.337 | 0.863309 |
ORF8 | 113 | D113del | GAC | --- | 209 | 209 | B.1.1.7 | 0.000187 |
ORF8 | 113 | D113D | gaC | gaT | 201 | 201 | AY.4 | 0.000313 |
ORF8 | 113 | D113D | gaC | gaT | 86 | 86 | AY.44 | 0.000523 |
ORF8 | 113 | D113V | gAc | gTc | 56 | 63 | All | 0.000011 |
ORF8 | 113 | D113V | gAC | gTT | 4 | 63 | All | 0.000001 |
ORF8 | 113 | D113V | gAC | gTA | 3 | 63 | All | 0.000001 |
ORF8 | 113 | D113Y | Gac | Tac | 62 | 62 | B.1.617.2 | 0.000233 |
ORF8 | 113 | D113del | GAC | --- | 56 | 56 | AY.4 | 0.000087 |
ORF8 | 113 | D113Y | Gac | Tac | 56 | 56 | B.1.1.7 | 0.00005 |
ORF8 | 113 | D113V | gAc | gTc | 50 | 50 | AY.3 | 0.000497 |
ORF8 | 113 | D113D | gaC | gaT | 45 | 45 | B.1 | 0.000412 |
ORF8 | 113 | D113G | gAc | gGc | 41 | 44 | All | 0.000008 |
ORF8 | 113 | D113G | gAC | gGA | 2 | 44 | All | 0 |
ORF8 | 113 | D113G | gAC | gGT | 1 | 44 | All | 0 |
ORF8 | 113 | D113Y | Gac | Tac | 37 | 37 | AY.10 | 0.019608 |
ORF8 | 113 | D113del | GAC | --- | 37 | 37 | AY.29 | 0.000584 |
ORF8 | 113 | D113D | gaC | gaT | 36 | 36 | B.1.177 | 0.000474 |
ORF8 | 113 | D113del | GAC | --- | 33 | 33 | B.1.243 | 0.002296 |
ORF8 | 113 | D113D | gaC | gaT | 31 | 31 | AY.103 | 0.000192 |
ORF8 | 113 | D113N | Gac | Aac | 30 | 30 | All | 0.000006 |
ORF8 | 113 | D113D | gaC | gaT | 30 | 30 | B.1.1 | 0.000544 |
ORF8 | 113 | D113D | gaC | gaT | 30 | 30 | B.1.2 | 0.000264 |
ORF8 | 113 | D113del1 | Gac | -ac | 24 | 28 | All | 0.000005 |
ORF8 | 113 | D113del1 | gaC | ga- | 4 | 28 | All | 0.000001 |
ORF8 | 113 | D113D | gaC | gaT | 27 | 27 | AY.25 | 0.000162 |
ORF8 | 113 | D113Y | Gac | Tac | 26 | 26 | B.1.587 | 0.049336 |
ORF8 | 113 | D113H | Gac | Cac | 25 | 25 | All | 0.000005 |
ORF8 | 113 | D113Y | Gac | Tac | 24 | 24 | B.1.1 | 0.000435 |
ORF8 | 113 | D113Y | Gac | Tac | 17 | 17 | A.23.1 | 0.011972 |
ORF8 | 113 | D113E | gaC | gaA | 16 | 17 | All | 0.000003 |
ORF8 | 113 | D113E | gaC | gaG | 1 | 17 | All | 0 |
ORF8 | 113 | D113G | gAc | gGc | 16 | 17 | B.1.1.7 | 0.000014 |
ORF8 | 113 | D113G | gAC | gGT | 1 | 17 | B.1.1.7 | 0.000001 |
ORF8 | 113 | D113A | gAc | gCc | 13 | 15 | All | 0.000002 |
ORF8 | 113 | D113A | gAC | gCG | 1 | 15 | All | 0 |
ORF8 | 113 | D113A | gAC | gCT | 1 | 15 | All | 0 |
ORF8 | 113 | D113D | gaC | gaT | 15 | 15 | AY.38 | 0.007489 |
ORF8 | 113 | D113Y | Gac | Tac | 15 | 15 | B.1 | 0.000137 |
ORF8 | 113 | D113D | gaC | gaT | 15 | 15 | B.1.1.263 | 0.023364 |
ORF8 | 113 | D113Y | Gac | Tac | 15 | 15 | B.1.628 | 0.005285 |
ORF8 | 113 | D113del | GAC | --- | 14 | 14 | AY.47 | 0.000435 |
ORF8 | 113 | D113H | Gac | Cac | 14 | 14 | B.1.1.7 | 0.000013 |
ORF8 | 113 | D113D | gaC | gaT | 14 | 14 | B.1.617.2 | 0.000053 |
ORF8 | 113 | D113del1 | Gac | -ac | 13 | 13 | B.1.1.7 | 0.000012 |
ORF8 | 113 | D113D | gaC | gaT | 13 | 13 | P.1 | 0.000205 |
ORF8 | 113 | D113del | GAC | --- | 12 | 12 | AY.39.1 | 0.000475 |
ORF8 | 113 | D113Y | Gac | Tac | 11 | 11 | AY.4 | 0.000017 |
ORF8 | 113 | D113D | gaC | gaT | 11 | 11 | AY.47 | 0.000342 |
ORF8 | 113 | D113V | gAC | gTT | 4 | 10 | B.1.243 | 0.000278 |
ORF8 | 113 | D113V | gAC | gTA | 3 | 10 | B.1.243 | 0.000209 |
ORF8 | 113 | D113V | gAc | gTc | 3 | 10 | B.1.243 | 0.000209 |
ORF8 | 113 | D113D | gaC | gaT | 10 | 10 | P.1.1 | 0.003177 |
ORF8 | 113 | D113D | gaC | gaT | 9 | 9 | B.1.160 | 0.000281 |
ORF8 | 113 | D113Y | Gac | Tac | 8 | 8 | B.1.1.153 | 0.008762 |
ORF8 | 113 | D113D | gaC | gaT | 7 | 7 | AE.8 | 0.003423 |
ORF8 | 113 | D113Y | Gac | Tac | 7 | 7 | AY.103 | 0.000043 |
ORF8 | 113 | D113Y | Gac | Tac | 7 | 7 | AY.46.6 | 0.000505 |
ORF8 | 113 | D113Y | Gac | Tac | 7 | 7 | B.1.1.232 | 0.012704 |
ORF8 | 113 | D113del | GAC | --- | 7 | 7 | B.1.36.16 | 0.009972 |
ORF8 | 113 | D113Y | Gac | Tac | 6 | 6 | AY.25 | 0.000036 |
ORF8 | 113 | D113D | gaC | gaT | 6 | 6 | AY.26 | 0.00017 |
ORF8 | 113 | D113Y | Gac | Tac | 6 | 6 | AY.3 | 0.00006 |
ORF8 | 113 | D113D | gaC | gaT | 6 | 6 | AY.43 | 0.000027 |
ORF8 | 113 | D113Y | Gac | Tac | 6 | 6 | AY.43 | 0.000027 |
ORF8 | 113 | D113del | GAC | --- | 6 | 6 | AY.91 | 0.004383 |
ORF8 | 113 | D113del | GAC | --- | 6 | 6 | B.1.1.265 | 0.018927 |
ORF8 | 113 | D113D | gaC | gaT | 6 | 6 | B.1.177.12 | 0.00091 |
ORF8 | 113 | D113Y | Gac | Tac | 6 | 6 | B.1.2 | 0.000053 |
ORF8 | 113 | D113del2 | gAC | g-- | 5 | 5 | All | 0.000001 |
ORF8 | 113 | D113del | GAC | --- | 5 | 5 | AY.102 | 0.000133 |
ORF8 | 113 | D113del | GAC | --- | 5 | 5 | AY.29.1 | 0.001103 |
ORF8 | 113 | D113Y | Gac | Tac | 5 | 5 | B.1.160 | 0.000156 |
ORF8 | 113 | D113N | Gac | Aac | 5 | 5 | B.1.177 | 0.000066 |
ORF8 | 113 | D113D | gaC | gaT | 5 | 5 | B.1.221 | 0.000355 |
ORF8 | 113 | D113D | gaC | gaT | 5 | 5 | B.1.258 | 0.000333 |
ORF8 | 113 | D113X | GAC | TGA | 2 | 4 | All | 0 |
ORF8 | 113 | D113F | GAc | TTc | 2 | 4 | All | 0 |
ORF8 | 113 | D113F | GAC | TTT | 2 | 4 | All | 0 |
ORF8 | 113 | D113X | GaC | TaA | 2 | 4 | All | 0 |
ORF8 | 113 | D113G | gAc | gGc | 4 | 4 | AY.44 | 0.000024 |
ORF8 | 113 | D113Y | Gac | Tac | 4 | 4 | AY.68 | 0.001095 |
ORF8 | 113 | D113D | gaC | gaT | 4 | 4 | B.1.1.267 | 0.040404 |
ORF8 | 113 | D113D | gaC | gaT | 4 | 4 | B.1.1.485 | 0.066667 |
ORF8 | 113 | D113del2 | gAC | g-- | 4 | 4 | B.1.1.7 | 0.000004 |
ORF8 | 113 | D113A | gAc | gCc | 4 | 4 | B.1.2 | 0.000035 |
ORF8 | 113 | D113F | GAC | TTT | 2 | 4 | B.1.243 | 0.000139 |
ORF8 | 113 | D113F | GAc | TTc | 2 | 4 | B.1.243 | 0.000139 |
ORF8 | 113 | D113Y | Gac | Tac | 4 | 4 | B.1.427 | 0.000202 |
ORF8 | 113 | D113G | gAc | gGc | 2 | 4 | B.1.427 | 0.000101 |
ORF8 | 113 | D113X | GAC | TGA | 2 | 4 | B.1.427 | 0.000101 |
ORF8 | 113 | D113X | GaC | TaA | 2 | 4 | B.1.427 | 0.000101 |
ORF8 | 113 | D113G | gAC | gGA | 2 | 4 | B.1.427 | 0.000101 |
ORF8 | 113 | D113D | gaC | gaT | 4 | 4 | B.1.466.1 | 0.028777 |
ORF8 | 113 | D113del | GAC | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF8 | 113 | D113del | GAC | --- | 4 | 4 | P.1 | 0.000063 |
ORF8 | 113 | D113del | GAC | --- | 4 | 4 | P.1.1 | 0.001271 |
ORF8 | 113 | D113Y | Gac | Tac | 3 | 3 | A.2.5 | 0.001497 |
ORF8 | 113 | D113D | gaC | gaT | 3 | 3 | AY.20 | 0.000117 |
ORF8 | 113 | D113D | gaC | gaT | 3 | 3 | AY.29 | 0.000047 |
ORF8 | 113 | D113D | gaC | gaT | 3 | 3 | AY.33 | 0.0002 |
ORF8 | 113 | D113del | GAC | --- | 3 | 3 | AY.43 | 0.000013 |
ORF8 | 113 | D113Y | Gac | Tac | 3 | 3 | AY.47 | 0.000093 |
ORF8 | 113 | D113del | GAC | --- | 3 | 3 | AY.5 | 0.000062 |
ORF8 | 113 | D113D | gaC | gaT | 3 | 3 | AY.98.1 | 0.000145 |
ORF8 | 113 | D113Y | Gac | Tac | 3 | 3 | B | 0.000383 |
ORF8 | 113 | D113Y | Gac | Tac | 3 | 3 | B.1.1.333 | 0.003229 |
ORF8 | 113 | D113D | gaC | gaT | 3 | 3 | B.1.1.348 | 0.002389 |
ORF8 | 113 | D113D | gaC | gaT | 3 | 3 | B.1.1.434 | 0.001046 |
ORF8 | 113 | D113del | GAC | --- | 3 | 3 | B.1.1.519 | 0.000119 |
ORF8 | 113 | D113Y | Gac | Tac | 3 | 3 | B.1.1.519 | 0.000119 |
ORF8 | 113 | D113E | gaC | gaA | 3 | 3 | B.1.1.7 | 0.000003 |
ORF8 | 113 | D113E | gaC | gaA | 2 | 3 | B.1.427 | 0.000101 |
ORF8 | 113 | D113E | gaC | gaG | 1 | 3 | B.1.427 | 0.00005 |
ORF8 | 113 | D113D | gaC | gaT | 3 | 3 | B.1.596 | 0.000261 |
ORF8 | 113 | D113D | gaC | gaT | 3 | 3 | B.1.609 | 0.001438 |
ORF8 | 113 | D113del1 | Gac | -ac | 3 | 3 | C.36.3 | 0.001702 |
ORF8 | 113 | D113D | gaC | gaT | 3 | 3 | Q.3 | 0.000435 |
ORF8 | 113 | D113D | gaC | gaT | 3 | 3 | Q.8 | 0.000495 |
ORF8 | 113 | D113N | Gac | Aac | 2 | 2 | 0.111111 | |
ORF8 | 113 | D113L | GAC | TTA | 2 | 2 | All | 0 |
ORF8 | 113 | D113C | GAc | TGc | 2 | 2 | All | 0 |
ORF8 | 113 | D113T | GAC | ACG | 1 | 2 | All | 0 |
ORF8 | 113 | D113T | GAc | ACc | 1 | 2 | All | 0 |
ORF8 | 113 | D113A | gAc | gCc | 2 | 2 | AY.102 | 0.000053 |
ORF8 | 113 | D113Y | Gac | Tac | 2 | 2 | AY.102 | 0.000053 |
ORF8 | 113 | D113D | gaC | gaT | 2 | 2 | AY.102 | 0.000053 |
ORF8 | 113 | D113G | gAc | gGc | 2 | 2 | AY.103 | 0.000012 |
ORF8 | 113 | D113del | GAC | --- | 2 | 2 | AY.113 | 0.000285 |
ORF8 | 113 | D113del | GAC | --- | 2 | 2 | AY.118 | 0.000125 |
ORF8 | 113 | D113D | gaC | gaT | 2 | 2 | AY.121 | 0.000271 |
ORF8 | 113 | D113D | gaC | gaT | 2 | 2 | AY.16 | 0.000759 |
ORF8 | 113 | D113Y | Gac | Tac | 2 | 2 | AY.2 | 0.000712 |
ORF8 | 113 | D113del1 | Gac | -ac | 1 | 2 | AY.25 | 0.000006 |
ORF8 | 113 | D113del1 | gaC | ga- | 1 | 2 | AY.25 | 0.000006 |
ORF8 | 113 | D113Y | Gac | Tac | 2 | 2 | AY.33 | 0.000134 |
ORF8 | 113 | D113V | gAc | gTc | 2 | 2 | AY.39 | 0.000049 |
ORF8 | 113 | D113E | gaC | gaA | 2 | 2 | AY.4 | 0.000003 |
ORF8 | 113 | D113del | GAC | --- | 2 | 2 | AY.4.2 | 0.000043 |
ORF8 | 113 | D113G | gAc | gGc | 2 | 2 | AY.4.2 | 0.000043 |
ORF8 | 113 | D113G | gAc | gGc | 2 | 2 | AY.43 | 0.000009 |
ORF8 | 113 | D113Y | Gac | Tac | 2 | 2 | AY.44 | 0.000012 |
ORF8 | 113 | D113D | gaC | gaT | 2 | 2 | AY.45 | 0.000243 |
ORF8 | 113 | D113D | gaC | gaT | 2 | 2 | AY.46.3 | 0.001867 |
ORF8 | 113 | D113del | GAC | --- | 2 | 2 | AY.48 | 0.00093 |
ORF8 | 113 | D113D | gaC | gaT | 2 | 2 | AY.5 | 0.000041 |
ORF8 | 113 | D113Y | Gac | Tac | 2 | 2 | AY.98.1 | 0.000097 |
ORF8 | 113 | D113Y | Gac | Tac | 2 | 2 | AY.99.2 | 0.000184 |
ORF8 | 113 | D113N | Gac | Aac | 2 | 2 | B.1 | 0.000018 |
ORF8 | 113 | D113A | gAc | gCc | 2 | 2 | B.1.1 | 0.000036 |
ORF8 | 113 | D113del | GAC | --- | 2 | 2 | B.1.1 | 0.000036 |
ORF8 | 113 | D113N | Gac | Aac | 2 | 2 | B.1.1 | 0.000036 |
ORF8 | 113 | D113Y | Gac | Tac | 2 | 2 | B.1.1.317 | 0.000823 |
ORF8 | 113 | D113G | gAc | gGc | 2 | 2 | B.1.1.434 | 0.000697 |
ORF8 | 113 | D113D | gaC | gaT | 2 | 2 | B.1.1.519 | 0.000079 |
ORF8 | 113 | D113N | Gac | Aac | 2 | 2 | B.1.1.7 | 0.000002 |
ORF8 | 113 | D113del | GAC | --- | 2 | 2 | B.1.160 | 0.000062 |
ORF8 | 113 | D113del | GAC | --- | 2 | 2 | B.1.177 | 0.000026 |
ORF8 | 113 | D113G | gAc | gGc | 2 | 2 | B.1.177 | 0.000026 |
ORF8 | 113 | D113del | GAC | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF8 | 113 | D113E | gaC | gaA | 2 | 2 | B.1.2 | 0.000018 |
ORF8 | 113 | D113D | gaC | gaT | 2 | 2 | B.1.234 | 0.000264 |
ORF8 | 113 | D113D | gaC | gaT | 2 | 2 | B.1.243 | 0.000139 |
ORF8 | 113 | D113N | Gac | Aac | 2 | 2 | B.1.243 | 0.000139 |
ORF8 | 113 | D113L | GAC | TTA | 2 | 2 | B.1.243 | 0.000139 |
ORF8 | 113 | D113D | gaC | gaT | 2 | 2 | B.1.258.11 | 0.000793 |
ORF8 | 113 | D113del | GAC | --- | 2 | 2 | B.1.36 | 0.000292 |
ORF8 | 113 | D113C | GAc | TGc | 2 | 2 | B.1.427 | 0.000101 |
ORF8 | 113 | D113T | GAC | ACG | 1 | 2 | B.1.427 | 0.00005 |
ORF8 | 113 | D113T | GAc | ACc | 1 | 2 | B.1.427 | 0.00005 |
ORF8 | 113 | D113A | gAC | gCG | 1 | 2 | B.1.427 | 0.00005 |
ORF8 | 113 | D113A | gAc | gCc | 1 | 2 | B.1.427 | 0.00005 |
ORF8 | 113 | D113Y | Gac | Tac | 2 | 2 | B.1.595 | 0.000522 |
ORF8 | 113 | D113N | Gac | Aac | 2 | 2 | B.1.617.2 | 0.000008 |
ORF8 | 113 | D113del1 | gaC | ga- | 1 | 2 | B.1.617.2 | 0.000004 |
ORF8 | 113 | D113del1 | Gac | -ac | 1 | 2 | B.1.617.2 | 0.000004 |
ORF8 | 113 | D113D | gaC | gaT | 2 | 2 | B.1.621 | 0.000177 |
ORF8 | 113 | D113D | gaC | gaT | 2 | 2 | B.6 | 0.00182 |
ORF8 | 113 | D113H | Gac | Cac | 2 | 2 | D.2 | 0.00015 |
ORF8 | 113 | D113Y | Gac | Tac | 2 | 2 | P.1 | 0.000032 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | A | 0.000387 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | A | 0.000387 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | A.2.5.3 | 0.010309 |
ORF8 | 113 | D113E | gaC | gaA | 1 | 1 | A.28 | 0.002646 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | AE.8 | 0.000489 |
ORF8 | 113 | D113R | GAC | AGA | 1 | 1 | All | 0 |
ORF8 | 113 | D113K | GaC | AaG | 1 | 1 | All | 0 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | AY.108 | 0.001103 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | AY.110 | 0.000113 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | AY.118 | 0.000063 |
ORF8 | 113 | D113E | gaC | gaA | 1 | 1 | AY.119 | 0.000035 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | AY.12 | 0.000316 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | AY.120 | 0.000037 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | AY.14 | 0.000088 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | AY.20 | 0.000039 |
ORF8 | 113 | D113del1 | Gac | -ac | 1 | 1 | AY.20 | 0.000039 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | AY.23 | 0.00007 |
ORF8 | 113 | D113N | Gac | Aac | 1 | 1 | AY.25 | 0.000006 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | AY.26 | 0.000028 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | AY.26 | 0.000028 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | AY.27 | 0.000065 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF8 | 113 | D113G | gAc | gGc | 1 | 1 | AY.36 | 0.000148 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | AY.39 | 0.000025 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | AY.39 | 0.000025 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | AY.39 | 0.000025 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | AY.39.1 | 0.00004 |
ORF8 | 113 | D113H | Gac | Cac | 1 | 1 | AY.39.1 | 0.00004 |
ORF8 | 113 | D113G | gAc | gGc | 1 | 1 | AY.4 | 0.000002 |
ORF8 | 113 | D113A | gAc | gCc | 1 | 1 | AY.4 | 0.000002 |
ORF8 | 113 | D113del2 | gAC | g-- | 1 | 1 | AY.4 | 0.000002 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | AY.42 | 0.00004 |
ORF8 | 113 | D113A | gAC | gCT | 1 | 1 | AY.43 | 0.000004 |
ORF8 | 113 | D113A | gAc | gCc | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 113 | D113E | gaC | gaA | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 113 | D113del1 | gaC | ga- | 1 | 1 | AY.44 | 0.000006 |
ORF8 | 113 | D113E | gaC | gaA | 1 | 1 | AY.46 | 0.000104 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | AY.46 | 0.000104 |
ORF8 | 113 | D113H | Gac | Cac | 1 | 1 | AY.47 | 0.000031 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | AY.49 | 0.003195 |
ORF8 | 113 | D113A | gAc | gCc | 1 | 1 | AY.5 | 0.000021 |
ORF8 | 113 | D113del1 | Gac | -ac | 1 | 1 | AY.5.3 | 0.000337 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | AY.5.4 | 0.000277 |
ORF8 | 113 | D113G | gAc | gGc | 1 | 1 | AY.6 | 0.000041 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | AY.6 | 0.000041 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | AY.61 | 0.000105 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | AY.70 | 0.000209 |
ORF8 | 113 | D113H | Gac | Cac | 1 | 1 | AY.74 | 0.000116 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | AY.9 | 0.000068 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | AY.91 | 0.00073 |
ORF8 | 113 | D113N | Gac | Aac | 1 | 1 | AY.99.2 | 0.000092 |
ORF8 | 113 | D113E | gaC | gaA | 1 | 1 | B.1 | 0.000009 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | B.1 | 0.000009 |
ORF8 | 113 | D113G | gAc | gGc | 1 | 1 | B.1.1 | 0.000018 |
ORF8 | 113 | D113E | gaC | gaA | 1 | 1 | B.1.1 | 0.000018 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.1.1 | 0.000327 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.1.161 | 0.003534 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | B.1.1.214 | 0.000055 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF8 | 113 | D113N | Gac | Aac | 1 | 1 | B.1.1.222 | 0.000204 |
ORF8 | 113 | D113G | gAc | gGc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.1.27 | 0.00565 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.1.280 | 0.003086 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.1.303 | 0.002762 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.1.312 | 0.001912 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.1.315 | 0.008475 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.1.316 | 0.000925 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF8 | 113 | D113H | Gac | Cac | 1 | 1 | B.1.1.369 | 0.000446 |
ORF8 | 113 | D113del1 | Gac | -ac | 1 | 1 | B.1.1.369 | 0.000446 |
ORF8 | 113 | D113N | Gac | Aac | 1 | 1 | B.1.1.396 | 0.045455 |
ORF8 | 113 | D113H | Gac | Cac | 1 | 1 | B.1.1.396 | 0.045455 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | B.1.1.413 | 0.006897 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.1.50 | 0.000679 |
ORF8 | 113 | D113G | gAc | gGc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.1.53 | 0.013699 |
ORF8 | 113 | D113V | gAc | gTc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF8 | 113 | D113R | GAC | AGA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.1.71 | 0.006061 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.126 | 0.001276 |
ORF8 | 113 | D113G | gAc | gGc | 1 | 1 | B.1.160 | 0.000031 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.160.8 | 0.001289 |
ORF8 | 113 | D113A | gAc | gCc | 1 | 1 | B.1.177 | 0.000013 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.177.56 | 0.000668 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.177.63 | 0.002703 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | B.1.177.7 | 0.000165 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.177.73 | 0.000566 |
ORF8 | 113 | D113N | Gac | Aac | 1 | 1 | B.1.177.81 | 0.000189 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.177.87 | 0.000728 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | B.1.195 | 0.005025 |
ORF8 | 113 | D113N | Gac | Aac | 1 | 1 | B.1.2 | 0.000009 |
ORF8 | 113 | D113G | gAc | gGc | 1 | 1 | B.1.2 | 0.000009 |
ORF8 | 113 | D113del1 | Gac | -ac | 1 | 1 | B.1.2 | 0.000009 |
ORF8 | 113 | D113E | gaC | gaA | 1 | 1 | B.1.221 | 0.000071 |
ORF8 | 113 | D113del1 | Gac | -ac | 1 | 1 | B.1.221 | 0.000071 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | B.1.258 | 0.000067 |
ORF8 | 113 | D113G | gAc | gGc | 1 | 1 | B.1.258.11 | 0.000396 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.320 | 0.001245 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.323 | 0.020833 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.329 | 0.000608 |
ORF8 | 113 | D113N | Gac | Aac | 1 | 1 | B.1.336 | 0.002439 |
ORF8 | 113 | D113del1 | Gac | -ac | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | B.1.351.2 | 0.000303 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.351.2 | 0.000303 |
ORF8 | 113 | D113N | Gac | Aac | 1 | 1 | B.1.36 | 0.000146 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.367 | 0.000792 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.400 | 0.000429 |
ORF8 | 113 | D113N | Gac | Aac | 1 | 1 | B.1.427 | 0.00005 |
ORF8 | 113 | D113del1 | gaC | ga- | 1 | 1 | B.1.427 | 0.00005 |
ORF8 | 113 | D113K | GaC | AaG | 1 | 1 | B.1.427 | 0.00005 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.429 | 0.000024 |
ORF8 | 113 | D113H | Gac | Cac | 1 | 1 | B.1.429 | 0.000024 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.432 | 0.011236 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.438.4 | 0.021277 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.453 | 0.003236 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.466.2 | 0.000391 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | B.1.468 | 0.005714 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.497 | 0.000315 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.526 | 0.000024 |
ORF8 | 113 | D113N | Gac | Aac | 1 | 1 | B.1.580 | 0.004065 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.617.1 | 0.000129 |
ORF8 | 113 | D113H | Gac | Cac | 1 | 1 | B.1.617.2 | 0.000004 |
ORF8 | 113 | D113N | Gac | Aac | 1 | 1 | B.1.621 | 0.000089 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.623 | 0.000536 |
ORF8 | 113 | D113N | Gac | Aac | 1 | 1 | B.1.627 | 0.00202 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | B.1.634 | 0.003425 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.635 | 0.017544 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.1.69 | 0.035714 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | B.40 | 0.000364 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | B.6.6 | 0.000889 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | C.2 | 0.016129 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | C.26 | 0.007353 |
ORF8 | 113 | D113N | Gac | Aac | 1 | 1 | C.35 | 0.000774 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | C.36 | 0.000911 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | C.36.3 | 0.000567 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | C.37 | 0.000116 |
ORF8 | 113 | D113H | Gac | Cac | 1 | 1 | C.37 | 0.000116 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | C.37 | 0.000116 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | D.2 | 0.000075 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | D.2 | 0.000075 |
ORF8 | 113 | D113H | Gac | Cac | 1 | 1 | P.1 | 0.000016 |
ORF8 | 113 | D113Y | Gac | Tac | 1 | 1 | P.1.10 | 0.000269 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | P.1.14 | 0.000048 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | Q.2 | 0.000613 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | Q.4 | 0.000455 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | Q.8 | 0.000165 |
ORF8 | 113 | D113del | GAC | --- | 1 | 1 | R.1 | 0.00009 |
ORF8 | 113 | D113D | gaC | gaT | 1 | 1 | XA | 0.022222 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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