CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 112

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF8	112	H112Y		nonsyn	Cat	Tat	2879	2879	1	28227-28229
ORF8	112	H112del		del	CAT	---	495	495	1	28227-28229
ORF8	112	H112R		nonsyn	cAt	cGt	339	339	1	28227-28229
ORF8	112	H112L		nonsyn	cAt	cTt	306	305	0.996732	28227-28229
ORF8	112	H112L		nonsyn	cAT	cTG	306	1	0.00326797	28227-28229
ORF8	112	H112H		syn	caT	caC	291	291	1	28227-28229
ORF8	112	H112N		nonsyn	Cat	Aat	47	45	0.957447	28227-28229
ORF8	112	H112N		nonsyn	CaT	AaC	47	2	0.0425532	28227-28229
ORF8	112	H112del1		del	caT	ca-	17	12	0.705882	28227-28229
ORF8	112	H112del1		del	Cat	-at	17	3	0.176471	28227-28229
ORF8	112	H112del1		del	cAt	c-t	17	1	0.0588235	28227-28229
ORF8	112	H112del1		del	cAT	c-C	17	1	0.0588235	28227-28229
ORF8	112	H112Q		nonsyn	caT	caG	12	8	0.666667	28227-28229
ORF8	112	H112Q		nonsyn	caT	caA	12	4	0.333333	28227-28229
ORF8	112	H112P		nonsyn	cAt	cCt	7	4	0.571429	28227-28229
ORF8	112	H112P		nonsyn	cAT	cCA	7	2	0.285714	28227-28229
ORF8	112	H112P		nonsyn	cAT	cCC	7	1	0.142857	28227-28229
ORF8	112	H112S		nonsyn	CAT	TCC	6	2	0.333333	28227-28229
ORF8	112	H112S		nonsyn	CAT	TCA	6	2	0.333333	28227-28229
ORF8	112	H112S		nonsyn	CAt	TCt	6	2	0.333333	28227-28229
ORF8	112	H112T		nonsyn	CAT	ACC	5	4	0.8	28227-28229
ORF8	112	H112T		nonsyn	CAt	ACt	5	1	0.2	28227-28229
ORF8	112	H112del2		del	CAt	--t	3	3	1	28227-28229
ORF8	112	H112X		nonsyn	CaT	TaA	2	2	1	28227-28229
ORF8	112	H112D		nonsyn	Cat	Gat	2	2	1	28227-28229
ORF8	112	H112I		nonsyn	CAT	ATC	2	1	0.5	28227-28229
ORF8	112	H112I		nonsyn	CAt	ATt	2	1	0.5	28227-28229
ORF8	112	H112F		nonsyn	CAt	TTt	1	1	1	28227-28229
ORF8	112	H112M		nonsyn	CAT	ATG	1	1	1	28227-28229
ORF8	112	H112K		nonsyn	CaT	AaG	1	1	1	28227-28229

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF8	112	H112Y	Cat	Tat	2879	2879	All	0.000551
ORF8	112	H112Y	Cat	Tat	1611	1611	Q.2	0.988344
ORF8	112	H112Y	Cat	Tat	1024	1024	B.1.1.7	0.000917
ORF8	112	H112del	CAT	---	495	495	All	0.000095
ORF8	112	H112R	cAt	cGt	339	339	All	0.000065
ORF8	112	H112L	cAt	cTt	305	306	All	0.000058
ORF8	112	H112L	cAT	cTG	1	306	All	0
ORF8	112	H112H	caT	caC	291	291	All	0.000056
ORF8	112	H112del	CAT	---	215	215	B.1.1.7	0.000192
ORF8	112	H112L	cAt	cTt	117	117	B.1.1.7	0.000105
ORF8	112	H112R	cAt	cGt	110	110	B.1.221	0.007814
ORF8	112	H112H	caT	caC	100	100	AY.118	0.006265
ORF8	112	H112R	cAt	cGt	67	67	AY.4	0.000104
ORF8	112	H112del	CAT	---	57	57	AY.4	0.000089
ORF8	112	H112N	Cat	Aat	45	47	All	0.000009
ORF8	112	H112N	CaT	AaC	2	47	All	0
ORF8	112	H112L	cAt	cTt	46	46	B.1.2	0.000405
ORF8	112	H112H	caT	caC	42	42	B.1.1.7	0.000038
ORF8	112	H112Y	Cat	Tat	41	41	AY.39	0.001013
ORF8	112	H112L	cAt	cTt	38	38	B.1.429	0.000894
ORF8	112	H112del	CAT	---	37	37	AY.29	0.000584
ORF8	112	H112Y	Cat	Tat	36	36	P.1	0.000567
ORF8	112	H112del	CAT	---	33	33	B.1.243	0.002296
ORF8	112	H112R	cAt	cGt	23	23	B.1.1.7	0.000021
ORF8	112	H112N	Cat	Aat	22	22	AY.91	0.01607
ORF8	112	H112R	cAt	cGt	21	21	AY.39	0.000519
ORF8	112	H112Y	Cat	Tat	18	18	B.1	0.000165
ORF8	112	H112R	cAt	cGt	18	18	B.1	0.000165
ORF8	112	H112del1	caT	ca-	12	17	All	0.000002
ORF8	112	H112del1	Cat	-at	3	17	All	0.000001
ORF8	112	H112del1	cAT	c-C	1	17	All	0
ORF8	112	H112del1	cAt	c-t	1	17	All	0
ORF8	112	H112L	cAt	cTt	17	17	B.1.221	0.001208
ORF8	112	H112del	CAT	---	16	16	B	0.002045
ORF8	112	H112L	cAt	cTt	14	15	B.1.427	0.000707
ORF8	112	H112L	cAT	cTG	1	15	B.1.427	0.00005
ORF8	112	H112del	CAT	---	14	14	AY.47	0.000435
ORF8	112	H112R	cAt	cGt	13	13	AY.44	0.000079
ORF8	112	H112Q	caT	caG	8	12	All	0.000002
ORF8	112	H112Q	caT	caA	4	12	All	0.000001
ORF8	112	H112H	caT	caC	12	12	AY.101	0.005885
ORF8	112	H112R	cAt	cGt	12	12	AY.25	0.000072
ORF8	112	H112del	CAT	---	12	12	AY.39.1	0.000475
ORF8	112	H112H	caT	caC	12	12	B.1.617.2	0.000045
ORF8	112	H112R	cAt	cGt	12	12	B.1.617.2	0.000045
ORF8	112	H112L	cAt	cTt	11	11	B.1	0.000101
ORF8	112	H112H	caT	caC	11	11	B.1	0.000101
ORF8	112	H112Y	Cat	Tat	11	11	B.1.1.216	0.009795
ORF8	112	H112H	caT	caC	11	11	B.1.1.362	0.061798
ORF8	112	H112Y	Cat	Tat	11	11	B.1.1.519	0.000437
ORF8	112	H112N	Cat	Aat	11	11	B.1.1.7	0.00001
ORF8	112	H112H	caT	caC	10	10	AY.110	0.001127
ORF8	112	H112Y	Cat	Tat	10	10	AY.111	0.001832
ORF8	112	H112Y	Cat	Tat	10	10	B.1.160	0.000312
ORF8	112	H112Y	Cat	Tat	10	10	B.1.2	0.000088
ORF8	112	H112L	cAt	cTt	9	9	B.1.243	0.000626
ORF8	112	H112Y	Cat	Tat	9	9	C.37	0.001045
ORF8	112	H112del	CAT	---	8	8	AY.102	0.000212
ORF8	112	H112H	caT	caC	8	8	AY.5.2	0.019704
ORF8	112	H112H	caT	caC	8	8	B.1.1.519	0.000318
ORF8	112	H112del	CAT	---	8	8	B.1.617.2	0.00003
ORF8	112	H112P	cAt	cCt	4	7	All	0.000001
ORF8	112	H112P	cAT	cCA	2	7	All	0
ORF8	112	H112P	cAT	cCC	1	7	All	0
ORF8	112	H112R	cAt	cGt	7	7	AY.102	0.000186
ORF8	112	H112H	caT	caC	7	7	B.1.170	0.030172
ORF8	112	H112R	cAt	cGt	7	7	B.1.2	0.000062
ORF8	112	H112del	CAT	---	7	7	B.1.36.16	0.009972
ORF8	112	H112H	caT	caC	7	7	B.1.524	0.009845
ORF8	112	H112S	CAT	TCA	2	6	All	0
ORF8	112	H112S	CAT	TCC	2	6	All	0
ORF8	112	H112S	CAt	TCt	2	6	All	0
ORF8	112	H112H	caT	caC	6	6	AY.4	0.000009
ORF8	112	H112del	CAT	---	6	6	AY.91	0.004383
ORF8	112	H112del	CAT	---	6	6	B.1.1.265	0.018927
ORF8	112	H112Y	Cat	Tat	6	6	B.1.366	0.029268
ORF8	112	H112R	cAt	cGt	6	6	B.1.429	0.000141
ORF8	112	H112L	cAt	cTt	6	6	B.1.596	0.000523
ORF8	112	H112R	cAt	cGt	6	6	B.1.637	0.000438
ORF8	112	H112T	CAT	ACC	4	5	All	0.000001
ORF8	112	H112T	CAt	ACt	1	5	All	0
ORF8	112	H112Y	Cat	Tat	5	5	AY.25	0.00003
ORF8	112	H112del	CAT	---	5	5	AY.29.1	0.001103
ORF8	112	H112Y	Cat	Tat	5	5	AY.4	0.000008
ORF8	112	H112Y	Cat	Tat	5	5	B.1.617.2	0.000019
ORF8	112	H112del	CAT	---	5	5	P.1	0.000079
ORF8	112	H112L	cAt	cTt	5	5	P.1.16	0.001871
ORF8	112	H112R	cAt	cGt	4	4	AY.3	0.00004
ORF8	112	H112R	cAt	cGt	4	4	AY.43	0.000018
ORF8	112	H112H	caT	caC	4	4	AY.47	0.000124
ORF8	112	H112H	caT	caC	4	4	B.1.1	0.000073
ORF8	112	H112P	cAT	cCA	2	4	B.1.427	0.000101
ORF8	112	H112S	CAT	TCA	2	4	B.1.427	0.000101
ORF8	112	H112S	CAt	TCt	2	4	B.1.427	0.000101
ORF8	112	H112P	cAt	cCt	2	4	B.1.427	0.000101
ORF8	112	H112L	cAt	cTt	4	4	B.1.561	0.001588
ORF8	112	H112del	CAT	---	4	4	P.1.1	0.001271
ORF8	112	H112del2	CAt	--t	3	3	All	0.000001
ORF8	112	H112Y	Cat	Tat	3	3	AY.103	0.000019
ORF8	112	H112del	CAT	---	3	3	AY.118	0.000188
ORF8	112	H112H	caT	caC	3	3	AY.120	0.000112
ORF8	112	H112R	cAt	cGt	3	3	AY.29	0.000047
ORF8	112	H112H	caT	caC	3	3	AY.43	0.000013
ORF8	112	H112Y	Cat	Tat	3	3	AY.47	0.000093
ORF8	112	H112del	CAT	---	3	3	AY.5	0.000062
ORF8	112	H112R	cAt	cGt	3	3	AY.9.2	0.00011
ORF8	112	H112del	CAT	---	3	3	B.1	0.000027
ORF8	112	H112R	cAt	cGt	3	3	B.1.1	0.000054
ORF8	112	H112del	CAT	---	3	3	B.1.1	0.000054
ORF8	112	H112Y	Cat	Tat	3	3	B.1.1	0.000054
ORF8	112	H112del	CAT	---	3	3	B.1.1.519	0.000119
ORF8	112	H112H	caT	caC	3	3	B.1.177	0.00004
ORF8	112	H112del	CAT	---	3	3	B.1.22	0.003953
ORF8	112	H112Q	caT	caA	2	3	B.1.427	0.000101
ORF8	112	H112Q	caT	caG	1	3	B.1.427	0.00005
ORF8	112	H112L	cAt	cTt	3	3	B.1.526	0.000071
ORF8	112	H112Y	Cat	Tat	3	3	B.1.628	0.001057
ORF8	112	H112del1	caT	ca-	3	3	C.36.3	0.001702
ORF8	112	H112Y	Cat	Tat	3	3	P.1.1	0.000953
ORF8	112	H112S	CAT	TCC	2	2		0.111111
ORF8	112	H112Q	caT	caG	2	2	A	0.000774
ORF8	112	H112Q	caT	caG	2	2	A.1	0.000564
ORF8	112	H112D	Cat	Gat	2	2	All	0
ORF8	112	H112X	CaT	TaA	2	2	All	0
ORF8	112	H112I	CAt	ATt	1	2	All	0
ORF8	112	H112I	CAT	ATC	1	2	All	0
ORF8	112	H112H	caT	caC	2	2	AY.103	0.000012
ORF8	112	H112del	CAT	---	2	2	AY.113	0.000285
ORF8	112	H112Y	Cat	Tat	2	2	AY.118	0.000125
ORF8	112	H112R	cAt	cGt	2	2	AY.120	0.000074
ORF8	112	H112H	caT	caC	2	2	AY.3	0.00002
ORF8	112	H112del	CAT	---	2	2	AY.4.2	0.000043
ORF8	112	H112del	CAT	---	2	2	AY.43	0.000009
ORF8	112	H112del	CAT	---	2	2	AY.48	0.00093
ORF8	112	H112N	Cat	Aat	2	2	B.1	0.000018
ORF8	112	H112N	Cat	Aat	2	2	B.1.1	0.000036
ORF8	112	H112L	cAt	cTt	2	2	B.1.1.163	0.015267
ORF8	112	H112L	cAt	cTt	2	2	B.1.1.432	0.002532
ORF8	112	H112del2	CAt	--t	2	2	B.1.1.7	0.000002
ORF8	112	H112D	Cat	Gat	2	2	B.1.1.7	0.000002
ORF8	112	H112del1	caT	ca-	1	2	B.1.1.7	0.000001
ORF8	112	H112del1	Cat	-at	1	2	B.1.1.7	0.000001
ORF8	112	H112del	CAT	---	2	2	B.1.160	0.000062
ORF8	112	H112Y	Cat	Tat	2	2	B.1.164	0.029851
ORF8	112	H112del	CAT	---	2	2	B.1.177	0.000026
ORF8	112	H112H	caT	caC	2	2	B.1.177.12	0.000303
ORF8	112	H112T	CAT	ACC	1	2	B.1.177.81	0.000189
ORF8	112	H112P	cAT	cCC	1	2	B.1.177.81	0.000189
ORF8	112	H112P	cAt	cCt	1	2	B.1.177.81	0.000189
ORF8	112	H112T	CAt	ACt	1	2	B.1.177.81	0.000189
ORF8	112	H112N	Cat	Aat	1	2	B.1.177.81	0.000189
ORF8	112	H112N	CaT	AaC	1	2	B.1.177.81	0.000189
ORF8	112	H112H	caT	caC	2	2	B.1.2	0.000018
ORF8	112	H112del	CAT	---	2	2	B.1.2	0.000018
ORF8	112	H112L	cAt	cTt	2	2	B.1.234	0.000264
ORF8	112	H112H	caT	caC	2	2	B.1.311	0.000549
ORF8	112	H112R	cAt	cGt	2	2	B.1.346	0.002621
ORF8	112	H112del	CAT	---	2	2	B.1.36	0.000292
ORF8	112	H112Y	Cat	Tat	2	2	B.1.369	0.00057
ORF8	112	H112H	caT	caC	2	2	B.1.417	0.057143
ORF8	112	H112Y	Cat	Tat	2	2	B.1.427	0.000101
ORF8	112	H112H	caT	caC	2	2	B.1.427	0.000101
ORF8	112	H112X	CaT	TaA	2	2	B.1.427	0.000101
ORF8	112	H112R	cAt	cGt	2	2	B.1.470	0.002809
ORF8	112	H112R	cAt	cGt	2	2	B.1.526	0.000047
ORF8	112	H112N	CaT	AaC	1	2	B.1.617.2	0.000004
ORF8	112	H112N	Cat	Aat	1	2	B.1.617.2	0.000004
ORF8	112	H112del1	caT	ca-	2	2	B.1.621	0.000177
ORF8	112	H112Y	Cat	Tat	2	2	B.1.637	0.000146
ORF8	112	H112Y	Cat	Tat	2	2	D.2	0.00015
ORF8	112	H112R	cAt	cGt	2	2	P.1	0.000032
ORF8	112	H112del1	caT	ca-	1	2	P.1	0.000016
ORF8	112	H112del1	Cat	-at	1	2	P.1	0.000016
ORF8	112	H112Y	Cat	Tat	2	2	Q.1	0.000253
ORF8	112	H112Y	Cat	Tat	2	2	Q.8	0.00033
ORF8	112	H112N	Cat	Aat	1	1	A	0.000387
ORF8	112	H112H	caT	caC	1	1	A.1	0.000282
ORF8	112	H112L	cAt	cTt	1	1	A.2.5	0.000499
ORF8	112	H112F	CAt	TTt	1	1	All	0
ORF8	112	H112K	CaT	AaG	1	1	All	0
ORF8	112	H112M	CAT	ATG	1	1	All	0
ORF8	112	H112H	caT	caC	1	1	AY.100	0.000046
ORF8	112	H112H	caT	caC	1	1	AY.102	0.000027
ORF8	112	H112del2	CAt	--t	1	1	AY.103	0.000006
ORF8	112	H112R	cAt	cGt	1	1	AY.108	0.001103
ORF8	112	H112del	CAT	---	1	1	AY.108	0.001103
ORF8	112	H112H	caT	caC	1	1	AY.114	0.000231
ORF8	112	H112H	caT	caC	1	1	AY.116	0.000287
ORF8	112	H112L	cAt	cTt	1	1	AY.116.1	0.000311
ORF8	112	H112R	cAt	cGt	1	1	AY.117	0.000085
ORF8	112	H112H	caT	caC	1	1	AY.119	0.000035
ORF8	112	H112del	CAT	---	1	1	AY.120	0.000037
ORF8	112	H112Y	Cat	Tat	1	1	AY.19	0.00114
ORF8	112	H112Y	Cat	Tat	1	1	AY.20	0.000039
ORF8	112	H112L	cAt	cTt	1	1	AY.20	0.000039
ORF8	112	H112L	cAt	cTt	1	1	AY.25	0.000006
ORF8	112	H112H	caT	caC	1	1	AY.25	0.000006
ORF8	112	H112Y	Cat	Tat	1	1	AY.26	0.000028
ORF8	112	H112del	CAT	---	1	1	AY.26	0.000028
ORF8	112	H112del	CAT	---	1	1	AY.3	0.00001
ORF8	112	H112Y	Cat	Tat	1	1	AY.3	0.00001
ORF8	112	H112Q	caT	caG	1	1	AY.38	0.000499
ORF8	112	H112H	caT	caC	1	1	AY.39	0.000025
ORF8	112	H112del	CAT	---	1	1	AY.39	0.000025
ORF8	112	H112H	caT	caC	1	1	AY.39.1	0.00004
ORF8	112	H112P	cAt	cCt	1	1	AY.4	0.000002
ORF8	112	H112N	Cat	Aat	1	1	AY.4	0.000002
ORF8	112	H112H	caT	caC	1	1	AY.4.2	0.000022
ORF8	112	H112del	CAT	---	1	1	AY.4.5	0.000107
ORF8	112	H112L	cAt	cTt	1	1	AY.40	0.000964
ORF8	112	H112L	cAt	cTt	1	1	AY.42	0.00004
ORF8	112	H112N	Cat	Aat	1	1	AY.43	0.000004
ORF8	112	H112Y	Cat	Tat	1	1	AY.43	0.000004
ORF8	112	H112del1	cAt	c-t	1	1	AY.43	0.000004
ORF8	112	H112del	CAT	---	1	1	AY.44	0.000006
ORF8	112	H112L	cAt	cTt	1	1	AY.44	0.000006
ORF8	112	H112Y	Cat	Tat	1	1	AY.44	0.000006
ORF8	112	H112H	caT	caC	1	1	AY.44	0.000006
ORF8	112	H112R	cAt	cGt	1	1	AY.46.2	0.000635
ORF8	112	H112H	caT	caC	1	1	AY.46.4	0.000165
ORF8	112	H112R	cAt	cGt	1	1	AY.47	0.000031
ORF8	112	H112Y	Cat	Tat	1	1	AY.5	0.000021
ORF8	112	H112del1	caT	ca-	1	1	AY.5.3	0.000337
ORF8	112	H112L	cAt	cTt	1	1	AY.55	0.000917
ORF8	112	H112Y	Cat	Tat	1	1	AY.6	0.000041
ORF8	112	H112H	caT	caC	1	1	AY.6	0.000041
ORF8	112	H112H	caT	caC	1	1	AY.60	0.000938
ORF8	112	H112Y	Cat	Tat	1	1	AY.61	0.000105
ORF8	112	H112N	Cat	Aat	1	1	AY.62	0.000436
ORF8	112	H112L	cAt	cTt	1	1	AY.68	0.000274
ORF8	112	H112L	cAt	cTt	1	1	AY.7.1	0.000113
ORF8	112	H112H	caT	caC	1	1	AY.9.1	0.000084
ORF8	112	H112Y	Cat	Tat	1	1	AY.9.1	0.000084
ORF8	112	H112Y	Cat	Tat	1	1	AY.93	0.000273
ORF8	112	H112Y	Cat	Tat	1	1	AY.98	0.000079
ORF8	112	H112L	cAt	cTt	1	1	AY.98.1	0.000048
ORF8	112	H112R	cAt	cGt	1	1	AY.99.1	0.001553
ORF8	112	H112Y	Cat	Tat	1	1	B	0.000128
ORF8	112	H112N	Cat	Aat	1	1	B	0.000128
ORF8	112	H112Q	caT	caA	1	1	B.1	0.000009
ORF8	112	H112Q	caT	caG	1	1	B.1.1	0.000018
ORF8	112	H112L	cAt	cTt	1	1	B.1.1	0.000018
ORF8	112	H112del	CAT	---	1	1	B.1.1.214	0.000055
ORF8	112	H112del	CAT	---	1	1	B.1.1.216	0.00089
ORF8	112	H112L	cAt	cTt	1	1	B.1.1.219	0.005
ORF8	112	H112Y	Cat	Tat	1	1	B.1.1.222	0.000204
ORF8	112	H112H	caT	caC	1	1	B.1.1.284	0.000107
ORF8	112	H112Y	Cat	Tat	1	1	B.1.1.306	0.000438
ORF8	112	H112L	cAt	cTt	1	1	B.1.1.306	0.000438
ORF8	112	H112Q	caT	caA	1	1	B.1.1.315	0.008475
ORF8	112	H112L	cAt	cTt	1	1	B.1.1.316	0.000925
ORF8	112	H112Y	Cat	Tat	1	1	B.1.1.351	0.002793
ORF8	112	H112del	CAT	---	1	1	B.1.1.369	0.000446
ORF8	112	H112Y	Cat	Tat	1	1	B.1.1.37	0.000193
ORF8	112	H112H	caT	caC	1	1	B.1.1.396	0.045455
ORF8	112	H112del	CAT	---	1	1	B.1.1.413	0.006897
ORF8	112	H112Y	Cat	Tat	1	1	B.1.1.434	0.000349
ORF8	112	H112L	cAt	cTt	1	1	B.1.1.519	0.00004
ORF8	112	H112Y	Cat	Tat	1	1	B.1.1.57	0.011494
ORF8	112	H112T	CAT	ACC	1	1	B.1.1.7	0.000001
ORF8	112	H112F	CAt	TTt	1	1	B.1.1.7	0.000001
ORF8	112	H112Y	Cat	Tat	1	1	B.1.177	0.000013
ORF8	112	H112R	cAt	cGt	1	1	B.1.177	0.000013
ORF8	112	H112del1	Cat	-at	1	1	B.1.177.48	0.003125
ORF8	112	H112Q	caT	caG	1	1	B.1.177.63	0.002703
ORF8	112	H112Y	Cat	Tat	1	1	B.1.177.65	0.000665
ORF8	112	H112del	CAT	---	1	1	B.1.177.7	0.000165
ORF8	112	H112Y	Cat	Tat	1	1	B.1.177.73	0.000566
ORF8	112	H112H	caT	caC	1	1	B.1.177.81	0.000189
ORF8	112	H112Y	Cat	Tat	1	1	B.1.177.83	0.001481
ORF8	112	H112del	CAT	---	1	1	B.1.195	0.005025
ORF8	112	H112del1	caT	ca-	1	1	B.1.2	0.000009
ORF8	112	H112Y	Cat	Tat	1	1	B.1.221	0.000071
ORF8	112	H112del1	caT	ca-	1	1	B.1.221	0.000071
ORF8	112	H112H	caT	caC	1	1	B.1.240	0.000216
ORF8	112	H112L	cAt	cTt	1	1	B.1.240	0.000216
ORF8	112	H112Y	Cat	Tat	1	1	B.1.240	0.000216
ORF8	112	H112T	CAT	ACC	1	1	B.1.243	0.00007
ORF8	112	H112del	CAT	---	1	1	B.1.258	0.000067
ORF8	112	H112H	caT	caC	1	1	B.1.258	0.000067
ORF8	112	H112H	caT	caC	1	1	B.1.336	0.002439
ORF8	112	H112del	CAT	---	1	1	B.1.351	0.00003
ORF8	112	H112del1	caT	ca-	1	1	B.1.351	0.00003
ORF8	112	H112R	cAt	cGt	1	1	B.1.351	0.00003
ORF8	112	H112del	CAT	---	1	1	B.1.351.2	0.000303
ORF8	112	H112T	CAT	ACC	1	1	B.1.36	0.000146
ORF8	112	H112R	cAt	cGt	1	1	B.1.36	0.000146
ORF8	112	H112H	caT	caC	1	1	B.1.36	0.000146
ORF8	112	H112Y	Cat	Tat	1	1	B.1.36	0.000146
ORF8	112	H112Y	Cat	Tat	1	1	B.1.36.19	0.009259
ORF8	112	H112L	cAt	cTt	1	1	B.1.375	0.00082
ORF8	112	H112H	caT	caC	1	1	B.1.411	0.003704
ORF8	112	H112Y	Cat	Tat	1	1	B.1.422	0.000812
ORF8	112	H112N	Cat	Aat	1	1	B.1.427	0.00005
ORF8	112	H112M	CAT	ATG	1	1	B.1.427	0.00005
ORF8	112	H112I	CAt	ATt	1	1	B.1.427	0.00005
ORF8	112	H112K	CaT	AaG	1	1	B.1.427	0.00005
ORF8	112	H112del	CAT	---	1	1	B.1.429	0.000024
ORF8	112	H112L	cAt	cTt	1	1	B.1.466.2	0.000391
ORF8	112	H112del	CAT	---	1	1	B.1.468	0.005714
ORF8	112	H112Y	Cat	Tat	1	1	B.1.525	0.000113
ORF8	112	H112L	cAt	cTt	1	1	B.1.564	0.000426
ORF8	112	H112L	cAt	cTt	1	1	B.1.577	0.000687
ORF8	112	H112del1	cAT	c-C	1	1	B.1.580	0.004065
ORF8	112	H112L	cAt	cTt	1	1	B.1.582	0.000491
ORF8	112	H112H	caT	caC	1	1	B.1.595	0.000261
ORF8	112	H112L	cAt	cTt	1	1	B.1.595	0.000261
ORF8	112	H112del	CAT	---	1	1	B.1.596	0.000087
ORF8	112	H112R	cAt	cGt	1	1	B.1.596	0.000087
ORF8	112	H112del	CAT	---	1	1	B.1.597	0.00463
ORF8	112	H112L	cAt	cTt	1	1	B.1.599	0.00365
ORF8	112	H112L	cAt	cTt	1	1	B.1.609	0.000479
ORF8	112	H112Y	Cat	Tat	1	1	B.1.610	0.003546
ORF8	112	H112del	CAT	---	1	1	B.1.617.1	0.000129
ORF8	112	H112Y	Cat	Tat	1	1	B.1.617.1	0.000129
ORF8	112	H112del1	caT	ca-	1	1	B.1.617.2	0.000004
ORF8	112	H112I	CAT	ATC	1	1	B.1.617.2	0.000004
ORF8	112	H112L	cAt	cTt	1	1	B.1.617.2	0.000004
ORF8	112	H112R	cAt	cGt	1	1	B.1.621	0.000089
ORF8	112	H112H	caT	caC	1	1	B.1.627	0.00202
ORF8	112	H112H	caT	caC	1	1	B.1.628	0.000352
ORF8	112	H112del	CAT	---	1	1	B.40	0.000364
ORF8	112	H112del	CAT	---	1	1	C.26	0.007353
ORF8	112	H112Y	Cat	Tat	1	1	C.31	0.017857
ORF8	112	H112L	cAt	cTt	1	1	C.31	0.017857
ORF8	112	H112del	CAT	---	1	1	D.2	0.000075
ORF8	112	H112del	CAT	---	1	1	P.1.15	0.000232
ORF8	112	H112Y	Cat	Tat	1	1	P.1.16	0.000374
ORF8	112	H112Y	Cat	Tat	1	1	P.1.7	0.000319
ORF8	112	H112L	cAt	cTt	1	1	P.2	0.000187
ORF8	112	H112del	CAT	---	1	1	Q.2	0.000613
ORF8	112	H112Y	Cat	Tat	1	1	Q.3	0.000145
ORF8	112	H112Y	Cat	Tat	1	1	Q.7	0.001111
ORF8	112	H112del	CAT	---	1	1	Q.8	0.000165
ORF8	112	H112del	CAT	---	1	1	R.1	0.00009
ORF8	112	H112L	cAt	cTt	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.