CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF8 : CodonNum = 111

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF8	111	Y111Y		syn	taT	taC	2440	2440	1	28224-28226
ORF8	111	Y111C		nonsyn	tAt	tGt	729	729	1	28224-28226
ORF8	111	Y111del		del	TAT	---	453	453	1	28224-28226
ORF8	111	Y111H		nonsyn	Tat	Cat	231	231	1	28224-28226
ORF8	111	Y111F		nonsyn	tAt	tTt	190	185	0.973684	28224-28226
ORF8	111	Y111F		nonsyn	tAT	tTC	190	5	0.0263158	28224-28226
ORF8	111	Y111del1		del	taT	ta-	107	104	0.971963	28224-28226
ORF8	111	Y111del1		del	Tat	-at	107	3	0.0280374	28224-28226
ORF8	111	Y111X		nonsyn	taT	taA	36	18	0.5	28224-28226
ORF8	111	Y111X		nonsyn	taT	taG	36	17	0.472222	28224-28226
ORF8	111	Y111X		nonsyn	tAT	tGA	36	1	0.0277778	28224-28226
ORF8	111	Y111del2		del	TAt	--t	34	32	0.941176	28224-28226
ORF8	111	Y111del2		del	TAT	--G	34	2	0.0588235	28224-28226
ORF8	111	Y111N		nonsyn	Tat	Aat	21	12	0.571429	28224-28226
ORF8	111	Y111N		nonsyn	TaT	AaC	21	9	0.428571	28224-28226
ORF8	111	Y111S		nonsyn	tAt	tCt	10	9	0.9	28224-28226
ORF8	111	Y111S		nonsyn	tAT	tCA	10	1	0.1	28224-28226
ORF8	111	Y111D		nonsyn	Tat	Gat	8	8	1	28224-28226
ORF8	111	Y111L		nonsyn	tAT	tTA	6	3	0.5	28224-28226
ORF8	111	Y111L		nonsyn	TAt	CTt	6	2	0.333333	28224-28226
ORF8	111	Y111L		nonsyn	TAT	CTG	6	1	0.166667	28224-28226
ORF8	111	Y111V		nonsyn	TAt	GTt	5	2	0.4	28224-28226
ORF8	111	Y111V		nonsyn	TAT	GTA	5	2	0.4	28224-28226
ORF8	111	Y111V		nonsyn	TAT	GTC	5	1	0.2	28224-28226
ORF8	111	Y111Q		nonsyn	TaT	CaA	4	4	1	28224-28226
ORF8	111	Y111E		nonsyn	TaT	GaA	3	3	1	28224-28226
ORF8	111	Y111P		nonsyn	TAT	CCA	3	2	0.666667	28224-28226
ORF8	111	Y111P		nonsyn	TAt	CCt	3	1	0.333333	28224-28226
ORF8	111	Y111I		nonsyn	TAt	ATt	2	1	0.5	28224-28226
ORF8	111	Y111I		nonsyn	TAT	ATC	2	1	0.5	28224-28226
ORF8	111	Y111K		nonsyn	TaT	AaA	1	1	1	28224-28226
ORF8	111	Y111W		nonsyn	tAT	tGG	1	1	1	28224-28226

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF8	111	Y111Y	taT	taC	2440	2440	All	0.000467
ORF8	111	Y111C	tAt	tGt	729	729	All	0.000139
ORF8	111	Y111Y	taT	taC	664	664	B.1	0.006082
ORF8	111	Y111Y	taT	taC	591	591	AY.4	0.00092
ORF8	111	Y111del	TAT	---	453	453	All	0.000087
ORF8	111	Y111Y	taT	taC	445	445	B.1.1	0.008073
ORF8	111	Y111H	Tat	Cat	231	231	All	0.000044
ORF8	111	Y111Y	taT	taC	218	218	B.1.160	0.006799
ORF8	111	Y111C	tAt	tGt	193	193	B.1.1.7	0.000173
ORF8	111	Y111F	tAt	tTt	185	190	All	0.000035
ORF8	111	Y111F	tAT	tTC	5	190	All	0.000001
ORF8	111	Y111C	tAt	tGt	176	176	B.1.429	0.004141
ORF8	111	Y111del	TAT	---	151	151	B.1.1.7	0.000135
ORF8	111	Y111F	tAt	tTt	139	139	B.1.160.9	1
ORF8	111	Y111H	Tat	Cat	130	130	AY.93	0.0355
ORF8	111	Y111del1	taT	ta-	104	107	All	0.00002
ORF8	111	Y111del1	Tat	-at	3	107	All	0.000001
ORF8	111	Y111del1	taT	ta-	102	102	B.1.1.7	0.000091
ORF8	111	Y111C	tAt	tGt	92	92	B.1.497	0.028958
ORF8	111	Y111Y	taT	taC	72	72	B.1.1.7	0.000064
ORF8	111	Y111Y	taT	taC	61	61	B.1.617.2	0.00023
ORF8	111	Y111Y	taT	taC	60	60	B.1.1.224	0.857143
ORF8	111	Y111del	TAT	---	57	57	AY.4	0.000089
ORF8	111	Y111Y	taT	taC	53	53	AY.33	0.003539
ORF8	111	Y111C	tAt	tGt	38	38	B.1.617.2	0.000143
ORF8	111	Y111Y	taT	taC	37	37	AY.103	0.00023
ORF8	111	Y111del	TAT	---	37	37	AY.29	0.000584
ORF8	111	Y111X	taT	taA	18	36	All	0.000003
ORF8	111	Y111X	taT	taG	17	36	All	0.000003
ORF8	111	Y111X	tAT	tGA	1	36	All	0
ORF8	111	Y111del2	TAt	--t	32	34	All	0.000006
ORF8	111	Y111del2	TAT	--G	2	34	All	0
ORF8	111	Y111del	TAT	---	33	33	B.1.243	0.002296
ORF8	111	Y111del	TAT	---	32	32	B.1.160	0.000998
ORF8	111	Y111C	tAt	tGt	31	31	AY.4	0.000048
ORF8	111	Y111del2	TAt	--t	24	26	B.1.1.7	0.000021
ORF8	111	Y111del2	TAT	--G	2	26	B.1.1.7	0.000002
ORF8	111	Y111Y	taT	taC	25	25	B.1.530	0.178571
ORF8	111	Y111N	Tat	Aat	12	21	All	0.000002
ORF8	111	Y111N	TaT	AaC	9	21	All	0.000002
ORF8	111	Y111C	tAt	tGt	20	20	AY.7.1	0.002254
ORF8	111	Y111Y	taT	taC	20	20	B.1.395	0.140845
ORF8	111	Y111C	tAt	tGt	19	19	AY.44	0.000116
ORF8	111	Y111Y	taT	taC	18	18	AY.44	0.00011
ORF8	111	Y111del	TAT	---	16	16	B	0.002045
ORF8	111	Y111C	tAt	tGt	15	15	AY.43	0.000066
ORF8	111	Y111del	TAT	---	14	14	AY.47	0.000435
ORF8	111	Y111H	Tat	Cat	14	14	B.1.2	0.000123
ORF8	111	Y111C	tAt	tGt	13	13	AY.102	0.000345
ORF8	111	Y111C	tAt	tGt	13	13	B.1	0.000119
ORF8	111	Y111H	Tat	Cat	13	13	B.1.1.7	0.000012
ORF8	111	Y111H	Tat	Cat	12	12	AY.25	0.000072
ORF8	111	Y111Y	taT	taC	12	12	AY.39.1	0.000475
ORF8	111	Y111Y	taT	taC	12	12	AY.9	0.000811
ORF8	111	Y111C	tAt	tGt	11	11	AY.25	0.000066
ORF8	111	Y111C	tAt	tGt	11	11	AY.3.1	0.000938
ORF8	111	Y111F	tAt	tTt	11	11	AY.4	0.000017
ORF8	111	Y111H	Tat	Cat	11	11	B.1.177	0.000145
ORF8	111	Y111S	tAt	tCt	9	10	All	0.000002
ORF8	111	Y111S	tAT	tCA	1	10	All	0
ORF8	111	Y111Y	taT	taC	10	10	AY.43	0.000044
ORF8	111	Y111X	taT	taG	5	10	B.1.1.7	0.000004
ORF8	111	Y111X	taT	taA	4	10	B.1.1.7	0.000004
ORF8	111	Y111X	tAT	tGA	1	10	B.1.1.7	0.000001
ORF8	111	Y111C	tAt	tGt	9	9	AY.103	0.000056
ORF8	111	Y111Y	taT	taC	9	9	AY.116	0.002581
ORF8	111	Y111Y	taT	taC	9	9	B.1.1.419	0.066667
ORF8	111	Y111D	Tat	Gat	8	8	All	0.000002
ORF8	111	Y111del	TAT	---	8	8	AY.102	0.000212
ORF8	111	Y111H	Tat	Cat	8	8	AY.103	0.00005
ORF8	111	Y111Y	taT	taC	7	7	AY.102	0.000186
ORF8	111	Y111F	tAt	tTt	7	7	B.1	0.000064
ORF8	111	Y111F	tAT	tTC	4	7	B.1.243	0.000278
ORF8	111	Y111F	tAt	tTt	3	7	B.1.243	0.000209
ORF8	111	Y111del	TAT	---	7	7	B.1.36.16	0.009972
ORF8	111	Y111del	TAT	---	7	7	B.1.617.2	0.000026
ORF8	111	Y111H	Tat	Cat	7	7	B.1.617.2	0.000026
ORF8	111	Y111C	tAt	tGt	7	7	B.1.621	0.00062
ORF8	111	Y111L	tAT	tTA	3	6	All	0.000001
ORF8	111	Y111L	TAt	CTt	2	6	All	0
ORF8	111	Y111L	TAT	CTG	1	6	All	0
ORF8	111	Y111C	tAt	tGt	6	6	AY.118	0.000376
ORF8	111	Y111N	Tat	Aat	6	6	AY.25	0.000036
ORF8	111	Y111C	tAt	tGt	6	6	AY.3	0.00006
ORF8	111	Y111Y	taT	taC	6	6	AY.39	0.000148
ORF8	111	Y111del	TAT	---	6	6	AY.91	0.004383
ORF8	111	Y111del	TAT	---	6	6	B.1.1.265	0.018927
ORF8	111	Y111F	tAt	tTt	6	6	B.1.160	0.000187
ORF8	111	Y111del	TAT	---	6	6	P.1	0.000095
ORF8	111	Y111V	TAT	GTA	2	5	All	0
ORF8	111	Y111V	TAt	GTt	2	5	All	0
ORF8	111	Y111V	TAT	GTC	1	5	All	0
ORF8	111	Y111del	TAT	---	5	5	AY.29.1	0.001103
ORF8	111	Y111H	Tat	Cat	5	5	AY.3	0.00005
ORF8	111	Y111X	taT	taA	5	5	AY.3	0.00005
ORF8	111	Y111Y	taT	taC	5	5	B.1.2	0.000044
ORF8	111	Y111H	Tat	Cat	5	5	B.1.240	0.001078
ORF8	111	Y111F	tAt	tTt	5	5	B.1.429	0.000118
ORF8	111	Y111Q	TaT	CaA	4	4	All	0.000001
ORF8	111	Y111Y	taT	taC	4	4	AY.106	0.00134
ORF8	111	Y111H	Tat	Cat	4	4	AY.116	0.001147
ORF8	111	Y111del	TAT	---	4	4	AY.26	0.000113
ORF8	111	Y111C	tAt	tGt	4	4	AY.33	0.000267
ORF8	111	Y111C	tAt	tGt	4	4	AY.39	0.000099
ORF8	111	Y111X	taT	taG	4	4	AY.4	0.000006
ORF8	111	Y111X	taT	taG	4	4	AY.44	0.000024
ORF8	111	Y111C	tAt	tGt	4	4	AY.6	0.000165
ORF8	111	Y111del	TAT	---	4	4	B.1.1	0.000073
ORF8	111	Y111Y	taT	taC	4	4	B.1.1.316	0.0037
ORF8	111	Y111Y	taT	taC	4	4	B.1.1.70	0.001364
ORF8	111	Y111C	tAt	tGt	4	4	B.1.2	0.000035
ORF8	111	Y111Y	taT	taC	4	4	B.1.243	0.000278
ORF8	111	Y111F	tAt	tTt	3	4	B.1.427	0.000151
ORF8	111	Y111V	TAT	GTA	2	4	B.1.427	0.000101
ORF8	111	Y111V	TAt	GTt	2	4	B.1.427	0.000101
ORF8	111	Y111F	tAT	tTC	1	4	B.1.427	0.00005
ORF8	111	Y111Y	taT	taC	4	4	B.1.564	0.001704
ORF8	111	Y111Y	taT	taC	4	4	P.1	0.000063
ORF8	111	Y111del	TAT	---	4	4	P.1.1	0.001271
ORF8	111	Y111E	TaT	GaA	3	3	All	0.000001
ORF8	111	Y111P	TAT	CCA	2	3	All	0
ORF8	111	Y111P	TAt	CCt	1	3	All	0
ORF8	111	Y111Y	taT	taC	3	3	AY.113	0.000427
ORF8	111	Y111Y	taT	taC	3	3	AY.118	0.000188
ORF8	111	Y111del	TAT	---	3	3	AY.118	0.000188
ORF8	111	Y111C	tAt	tGt	3	3	AY.120	0.000112
ORF8	111	Y111C	tAt	tGt	3	3	AY.29	0.000047
ORF8	111	Y111Y	taT	taC	3	3	AY.29	0.000047
ORF8	111	Y111Y	taT	taC	3	3	AY.46.2	0.001906
ORF8	111	Y111Y	taT	taC	3	3	AY.48	0.001395
ORF8	111	Y111Y	taT	taC	3	3	AY.61	0.000314
ORF8	111	Y111C	tAt	tGt	3	3	AY.66	0.003209
ORF8	111	Y111del	TAT	---	3	3	B.1	0.000027
ORF8	111	Y111C	tAt	tGt	3	3	B.1.1.318	0.000905
ORF8	111	Y111del	TAT	---	3	3	B.1.1.519	0.000119
ORF8	111	Y111D	Tat	Gat	3	3	B.1.1.7	0.000003
ORF8	111	Y111N	Tat	Aat	2	3	B.1.1.7	0.000002
ORF8	111	Y111N	TaT	AaC	1	3	B.1.1.7	0.000001
ORF8	111	Y111del	TAT	---	3	3	B.1.22	0.003953
ORF8	111	Y111Y	taT	taC	3	3	B.1.221.3	0.0025
ORF8	111	Y111Y	taT	taC	3	3	B.1.398	0.008929
ORF8	111	Y111Y	taT	taC	3	3	B.1.427	0.000151
ORF8	111	Y111Y	taT	taC	3	3	B.1.465	0.011407
ORF8	111	Y111Y	taT	taC	3	3	B.1.525	0.000339
ORF8	111	Y111N	TaT	AaC	3	3	C.36.3	0.001702
ORF8	111	Y111Y	taT	taC	3	3	P.1.14	0.000143
ORF8	111	Y111L	TAt	CTt	2	2		0.111111
ORF8	111	Y111I	TAt	ATt	1	2	All	0
ORF8	111	Y111I	TAT	ATC	1	2	All	0
ORF8	111	Y111C	tAt	tGt	2	2	AY.121	0.000271
ORF8	111	Y111X	taT	taG	2	2	AY.25	0.000012
ORF8	111	Y111del2	TAt	--t	2	2	AY.25	0.000012
ORF8	111	Y111del	TAT	---	2	2	AY.39	0.000049
ORF8	111	Y111del2	TAt	--t	2	2	AY.4	0.000003
ORF8	111	Y111del	TAT	---	2	2	AY.4.2	0.000043
ORF8	111	Y111C	tAt	tGt	2	2	AY.4.2.1	0.000298
ORF8	111	Y111Y	taT	taC	2	2	AY.42	0.00008
ORF8	111	Y111F	tAt	tTt	2	2	AY.43	0.000009
ORF8	111	Y111del	TAT	---	2	2	AY.43	0.000009
ORF8	111	Y111X	taT	taA	2	2	AY.43	0.000009
ORF8	111	Y111del	TAT	---	2	2	AY.48	0.00093
ORF8	111	Y111Y	taT	taC	2	2	AY.5	0.000041
ORF8	111	Y111H	Tat	Cat	2	2	AY.6	0.000082
ORF8	111	Y111H	Tat	Cat	2	2	AY.9.1	0.000167
ORF8	111	Y111S	tAt	tCt	2	2	AY.9.1	0.000167
ORF8	111	Y111Y	taT	taC	2	2	AY.99.2	0.000184
ORF8	111	Y111S	tAt	tCt	2	2	B.1.1	0.000036
ORF8	111	Y111H	Tat	Cat	2	2	B.1.1	0.000036
ORF8	111	Y111C	tAt	tGt	2	2	B.1.1.231	0.006192
ORF8	111	Y111D	Tat	Gat	2	2	B.1.160	0.000062
ORF8	111	Y111del	TAT	---	2	2	B.1.177	0.000026
ORF8	111	Y111C	tAt	tGt	2	2	B.1.177	0.000026
ORF8	111	Y111F	tAt	tTt	2	2	B.1.177	0.000026
ORF8	111	Y111S	tAt	tCt	1	2	B.1.177.81	0.000189
ORF8	111	Y111S	tAT	tCA	1	2	B.1.177.81	0.000189
ORF8	111	Y111P	TAt	CCt	1	2	B.1.177.81	0.000189
ORF8	111	Y111P	TAT	CCA	1	2	B.1.177.81	0.000189
ORF8	111	Y111del	TAT	---	2	2	B.1.2	0.000018
ORF8	111	Y111del	TAT	---	2	2	B.1.36	0.000292
ORF8	111	Y111C	tAt	tGt	2	2	B.1.427	0.000101
ORF8	111	Y111X	taT	taA	2	2	B.1.427	0.000101
ORF8	111	Y111L	tAT	tTA	2	2	B.1.427	0.000101
ORF8	111	Y111E	TaT	GaA	2	2	B.1.427	0.000101
ORF8	111	Y111D	Tat	Gat	2	2	B.1.427	0.000101
ORF8	111	Y111I	TAT	ATC	1	2	B.1.427	0.00005
ORF8	111	Y111I	TAt	ATt	1	2	B.1.427	0.00005
ORF8	111	Y111N	TaT	AaC	1	2	B.1.427	0.00005
ORF8	111	Y111N	Tat	Aat	1	2	B.1.427	0.00005
ORF8	111	Y111Y	taT	taC	2	2	B.1.429	0.000047
ORF8	111	Y111Y	taT	taC	2	2	B.1.497	0.00063
ORF8	111	Y111S	tAt	tCt	2	2	B.1.509	0.001732
ORF8	111	Y111Y	taT	taC	2	2	B.1.575	0.000607
ORF8	111	Y111Y	taT	taC	2	2	B.1.596	0.000174
ORF8	111	Y111Y	taT	taC	2	2	B.1.609	0.000959
ORF8	111	Y111C	tAt	tGt	2	2	C.37	0.000232
ORF8	111	Y111W	tAT	tGG	1	1	All	0
ORF8	111	Y111K	TaT	AaA	1	1	All	0
ORF8	111	Y111del	TAT	---	1	1	AY.103	0.000006
ORF8	111	Y111del	TAT	---	1	1	AY.105	0.000643
ORF8	111	Y111del	TAT	---	1	1	AY.108	0.001103
ORF8	111	Y111C	tAt	tGt	1	1	AY.111	0.000183
ORF8	111	Y111C	tAt	tGt	1	1	AY.113	0.000142
ORF8	111	Y111C	tAt	tGt	1	1	AY.119	0.000035
ORF8	111	Y111C	tAt	tGt	1	1	AY.12	0.000316
ORF8	111	Y111del	TAT	---	1	1	AY.120	0.000037
ORF8	111	Y111del2	TAt	--t	1	1	AY.120	0.000037
ORF8	111	Y111C	tAt	tGt	1	1	AY.120.2	0.001285
ORF8	111	Y111Y	taT	taC	1	1	AY.121	0.000135
ORF8	111	Y111Y	taT	taC	1	1	AY.14	0.000088
ORF8	111	Y111C	tAt	tGt	1	1	AY.15	0.002222
ORF8	111	Y111Y	taT	taC	1	1	AY.16.1	0.00047
ORF8	111	Y111Y	taT	taC	1	1	AY.20	0.000039
ORF8	111	Y111C	tAt	tGt	1	1	AY.23	0.00007
ORF8	111	Y111H	Tat	Cat	1	1	AY.24	0.000431
ORF8	111	Y111del	TAT	---	1	1	AY.25	0.000006
ORF8	111	Y111Y	taT	taC	1	1	AY.27	0.000065
ORF8	111	Y111H	Tat	Cat	1	1	AY.29	0.000016
ORF8	111	Y111del	TAT	---	1	1	AY.3	0.00001
ORF8	111	Y111Y	taT	taC	1	1	AY.3	0.00001
ORF8	111	Y111Y	taT	taC	1	1	AY.34	0.000097
ORF8	111	Y111H	Tat	Cat	1	1	AY.39	0.000025
ORF8	111	Y111C	tAt	tGt	1	1	AY.39.1	0.00004
ORF8	111	Y111N	Tat	Aat	1	1	AY.4	0.000002
ORF8	111	Y111H	Tat	Cat	1	1	AY.4	0.000002
ORF8	111	Y111Y	taT	taC	1	1	AY.4.2	0.000022
ORF8	111	Y111del	TAT	---	1	1	AY.4.5	0.000107
ORF8	111	Y111Y	taT	taC	1	1	AY.4.5	0.000107
ORF8	111	Y111Y	taT	taC	1	1	AY.41	0.000294
ORF8	111	Y111N	Tat	Aat	1	1	AY.42	0.00004
ORF8	111	Y111del2	TAt	--t	1	1	AY.43	0.000004
ORF8	111	Y111del	TAT	---	1	1	AY.44	0.000006
ORF8	111	Y111H	Tat	Cat	1	1	AY.44	0.000006
ORF8	111	Y111H	Tat	Cat	1	1	AY.46	0.000104
ORF8	111	Y111Y	taT	taC	1	1	AY.46	0.000104
ORF8	111	Y111Y	taT	taC	1	1	AY.46.4	0.000165
ORF8	111	Y111Y	taT	taC	1	1	AY.47	0.000031
ORF8	111	Y111C	tAt	tGt	1	1	AY.48	0.000465
ORF8	111	Y111del	TAT	---	1	1	AY.5	0.000021
ORF8	111	Y111D	Tat	Gat	1	1	AY.5	0.000021
ORF8	111	Y111H	Tat	Cat	1	1	AY.5.3	0.000337
ORF8	111	Y111N	TaT	AaC	1	1	AY.5.3	0.000337
ORF8	111	Y111C	tAt	tGt	1	1	AY.59	0.00053
ORF8	111	Y111Y	taT	taC	1	1	AY.67	0.000464
ORF8	111	Y111Y	taT	taC	1	1	AY.74	0.000116
ORF8	111	Y111C	tAt	tGt	1	1	AY.75	0.000056
ORF8	111	Y111C	tAt	tGt	1	1	AY.79	0.001211
ORF8	111	Y111C	tAt	tGt	1	1	AY.9.2	0.000037
ORF8	111	Y111Y	taT	taC	1	1	AY.93	0.000273
ORF8	111	Y111C	tAt	tGt	1	1	AY.98.1	0.000048
ORF8	111	Y111C	tAt	tGt	1	1	AY.99	0.001049
ORF8	111	Y111del1	Tat	-at	1	1	B	0.000128
ORF8	111	Y111Y	taT	taC	1	1	B	0.000128
ORF8	111	Y111E	TaT	GaA	1	1	B.1	0.000009
ORF8	111	Y111F	tAt	tTt	1	1	B.1.1	0.000018
ORF8	111	Y111del1	taT	ta-	1	1	B.1.1.214	0.000055
ORF8	111	Y111del	TAT	---	1	1	B.1.1.214	0.000055
ORF8	111	Y111del	TAT	---	1	1	B.1.1.216	0.00089
ORF8	111	Y111H	Tat	Cat	1	1	B.1.1.25	0.000569
ORF8	111	Y111H	Tat	Cat	1	1	B.1.1.265	0.003155
ORF8	111	Y111del2	TAt	--t	1	1	B.1.1.294	0.001266
ORF8	111	Y111L	TAT	CTG	1	1	B.1.1.315	0.008475
ORF8	111	Y111del	TAT	---	1	1	B.1.1.369	0.000446
ORF8	111	Y111N	TaT	AaC	1	1	B.1.1.396	0.045455
ORF8	111	Y111X	taT	taA	1	1	B.1.1.413	0.006897
ORF8	111	Y111C	tAt	tGt	1	1	B.1.1.434	0.000349
ORF8	111	Y111H	Tat	Cat	1	1	B.1.1.434	0.000349
ORF8	111	Y111F	tAt	tTt	1	1	B.1.1.514	0.038462
ORF8	111	Y111H	Tat	Cat	1	1	B.1.1.519	0.00004
ORF8	111	Y111V	TAT	GTC	1	1	B.1.1.7	0.000001
ORF8	111	Y111L	tAT	tTA	1	1	B.1.1.7	0.000001
ORF8	111	Y111S	tAt	tCt	1	1	B.1.1.7	0.000001
ORF8	111	Y111Q	TaT	CaA	1	1	B.1.1.7	0.000001
ORF8	111	Y111Y	taT	taC	1	1	B.1.139	0.000733
ORF8	111	Y111C	tAt	tGt	1	1	B.1.160	0.000031
ORF8	111	Y111H	Tat	Cat	1	1	B.1.160	0.000031
ORF8	111	Y111F	tAt	tTt	1	1	B.1.160.28	0.002924
ORF8	111	Y111X	taT	taG	1	1	B.1.177	0.000013
ORF8	111	Y111S	tAt	tCt	1	1	B.1.177.15	0.000631
ORF8	111	Y111F	tAt	tTt	1	1	B.1.177.43	0.001477
ORF8	111	Y111del	TAT	---	1	1	B.1.177.48	0.003125
ORF8	111	Y111X	taT	taG	1	1	B.1.177.5	0.001242
ORF8	111	Y111C	tAt	tGt	1	1	B.1.177.5	0.001242
ORF8	111	Y111W	tAT	tGG	1	1	B.1.177.63	0.002703
ORF8	111	Y111del	TAT	---	1	1	B.1.177.7	0.000165
ORF8	111	Y111H	Tat	Cat	1	1	B.1.177.81	0.000189
ORF8	111	Y111Q	TaT	CaA	1	1	B.1.177.81	0.000189
ORF8	111	Y111X	taT	taA	1	1	B.1.177.81	0.000189
ORF8	111	Y111del	TAT	---	1	1	B.1.195	0.005025
ORF8	111	Y111N	TaT	AaC	1	1	B.1.221	0.000071
ORF8	111	Y111X	taT	taA	1	1	B.1.234	0.000132
ORF8	111	Y111C	tAt	tGt	1	1	B.1.234	0.000132
ORF8	111	Y111Y	taT	taC	1	1	B.1.240	0.000216
ORF8	111	Y111C	tAt	tGt	1	1	B.1.241	0.000812
ORF8	111	Y111P	TAT	CCA	1	1	B.1.243	0.00007
ORF8	111	Y111F	tAt	tTt	1	1	B.1.258	0.000067
ORF8	111	Y111del	TAT	---	1	1	B.1.258	0.000067
ORF8	111	Y111F	tAt	tTt	1	1	B.1.258.11	0.000396
ORF8	111	Y111C	tAt	tGt	1	1	B.1.3	0.002618
ORF8	111	Y111C	tAt	tGt	1	1	B.1.311	0.000275
ORF8	111	Y111C	tAt	tGt	1	1	B.1.351	0.00003
ORF8	111	Y111del1	Tat	-at	1	1	B.1.351	0.00003
ORF8	111	Y111Y	taT	taC	1	1	B.1.351	0.00003
ORF8	111	Y111del2	TAt	--t	1	1	B.1.351	0.00003
ORF8	111	Y111N	TaT	AaC	1	1	B.1.351	0.00003
ORF8	111	Y111del	TAT	---	1	1	B.1.351	0.00003
ORF8	111	Y111del	TAT	---	1	1	B.1.351.2	0.000303
ORF8	111	Y111H	Tat	Cat	1	1	B.1.351.3	0.000876
ORF8	111	Y111Y	taT	taC	1	1	B.1.351.3	0.000876
ORF8	111	Y111K	TaT	AaA	1	1	B.1.36	0.000146
ORF8	111	Y111Y	taT	taC	1	1	B.1.36	0.000146
ORF8	111	Y111Y	taT	taC	1	1	B.1.36.31	0.001751
ORF8	111	Y111F	tAt	tTt	1	1	B.1.378	0.006849
ORF8	111	Y111Y	taT	taC	1	1	B.1.404	0.001302
ORF8	111	Y111Y	taT	taC	1	1	B.1.416	0.001269
ORF8	111	Y111del	TAT	---	1	1	B.1.429	0.000024
ORF8	111	Y111del	TAT	---	1	1	B.1.439	0.005917
ORF8	111	Y111del	TAT	---	1	1	B.1.468	0.005714
ORF8	111	Y111C	tAt	tGt	1	1	B.1.524	0.001406
ORF8	111	Y111del	TAT	---	1	1	B.1.525	0.000113
ORF8	111	Y111Y	taT	taC	1	1	B.1.526	0.000024
ORF8	111	Y111Q	TaT	CaA	1	1	B.1.580	0.004065
ORF8	111	Y111C	tAt	tGt	1	1	B.1.596	0.000087
ORF8	111	Y111del	TAT	---	1	1	B.1.596	0.000087
ORF8	111	Y111del	TAT	---	1	1	B.1.597	0.00463
ORF8	111	Y111Y	taT	taC	1	1	B.1.617.1	0.000129
ORF8	111	Y111X	taT	taA	1	1	B.1.617.2	0.000004
ORF8	111	Y111del1	Tat	-at	1	1	B.1.617.2	0.000004
ORF8	111	Y111N	Tat	Aat	1	1	B.1.617.2	0.000004
ORF8	111	Y111Y	taT	taC	1	1	B.1.621	0.000089
ORF8	111	Y111Q	TaT	CaA	1	1	B.1.627	0.00202
ORF8	111	Y111X	taT	taA	1	1	B.1.627	0.00202
ORF8	111	Y111H	Tat	Cat	1	1	B.1.627	0.00202
ORF8	111	Y111Y	taT	taC	1	1	B.1.634	0.003425
ORF8	111	Y111C	tAt	tGt	1	1	B.1.637	0.000073
ORF8	111	Y111C	tAt	tGt	1	1	B.3	0.000831
ORF8	111	Y111del	TAT	---	1	1	B.40	0.000364
ORF8	111	Y111del	TAT	---	1	1	C.26	0.007353
ORF8	111	Y111del	TAT	---	1	1	D.2	0.000075
ORF8	111	Y111C	tAt	tGt	1	1	P.1	0.000016
ORF8	111	Y111H	Tat	Cat	1	1	P.1	0.000016
ORF8	111	Y111C	tAt	tGt	1	1	P.1.14	0.000048
ORF8	111	Y111del	TAT	---	1	1	P.1.15	0.000232
ORF8	111	Y111Y	taT	taC	1	1	P.1.7	0.000319
ORF8	111	Y111del	TAT	---	1	1	Q.2	0.000613
ORF8	111	Y111del1	taT	ta-	1	1	Q.8	0.000165
ORF8	111	Y111del	TAT	---	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.