CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 11 | T11K | nonsyn | aCa | aAa | 14159 | 14159 | 1 | 27924-27926 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 11 | T11K | aCa | aAa | 14159 | 14159 | All | 0.002708 |
ORF8 | 11 | T11K | aCa | aAa | 11099 | 11099 | B.1.621 | 0.982473 |
ORF8 | 11 | T11K | aCa | aAa | 1955 | 1955 | B.1.621.1 | 0.988872 |
ORF8 | 11 | T11K | aCa | aAa | 336 | 336 | B.1.1.50 | 0.228106 |
ORF8 | 11 | T11K | aCa | aAa | 174 | 174 | B.1 | 0.001594 |
ORF8 | 11 | T11K | aCa | aAa | 119 | 119 | C.38 | 0.959677 |
ORF8 | 11 | T11K | aCa | aAa | 41 | 41 | B.1.1.7 | 0.000037 |
ORF8 | 11 | T11K | aCa | aAa | 33 | 33 | B.1.623 | 0.017704 |
ORF8 | 11 | T11K | aCa | aAa | 26 | 26 | B.1.1 | 0.000472 |
ORF8 | 11 | T11K | aCa | aAa | 23 | 23 | AY.3 | 0.000229 |
ORF8 | 11 | T11K | aCa | aAa | 23 | 23 | B.1.617.2 | 0.000087 |
ORF8 | 11 | T11K | aCa | aAa | 17 | 17 | AY.4 | 0.000026 |
ORF8 | 11 | T11K | aCa | aAa | 14 | 14 | B.1.1.284 | 0.001504 |
ORF8 | 11 | T11K | aCa | aAa | 14 | 14 | B.1.2 | 0.000123 |
ORF8 | 11 | T11K | aCa | aAa | 14 | 14 | B.1.351 | 0.000416 |
ORF8 | 11 | T11K | aCa | aAa | 12 | 12 | B | 0.001534 |
ORF8 | 11 | T11K | aCa | aAa | 10 | 10 | P.1 | 0.000158 |
ORF8 | 11 | T11K | aCa | aAa | 9 | 9 | AY.43 | 0.00004 |
ORF8 | 11 | T11K | aCa | aAa | 7 | 7 | B.1.243 | 0.000487 |
ORF8 | 11 | T11K | aCa | aAa | 7 | 7 | P.1.15 | 0.001626 |
ORF8 | 11 | T11K | aCa | aAa | 6 | 6 | AY.44 | 0.000037 |
ORF8 | 11 | T11K | aCa | aAa | 6 | 6 | B.1.1.25 | 0.003411 |
ORF8 | 11 | T11K | aCa | aAa | 6 | 6 | B.1.1.318 | 0.001811 |
ORF8 | 11 | T11K | aCa | aAa | 5 | 5 | A | 0.001935 |
ORF8 | 11 | T11K | aCa | aAa | 5 | 5 | B.1.1.28 | 0.001556 |
ORF8 | 11 | T11K | aCa | aAa | 4 | 4 | AY.102 | 0.000106 |
ORF8 | 11 | T11K | aCa | aAa | 4 | 4 | AY.20 | 0.000155 |
ORF8 | 11 | T11K | aCa | aAa | 4 | 4 | AY.25 | 0.000024 |
ORF8 | 11 | T11K | aCa | aAa | 4 | 4 | AY.9.2 | 0.000147 |
ORF8 | 11 | T11K | aCa | aAa | 4 | 4 | B.1.1.157 | 0.003653 |
ORF8 | 11 | T11K | aCa | aAa | 4 | 4 | B.1.1.306 | 0.001754 |
ORF8 | 11 | T11K | aCa | aAa | 4 | 4 | B.1.1.99 | 0.095238 |
ORF8 | 11 | T11K | aCa | aAa | 4 | 4 | B.1.177 | 0.000053 |
ORF8 | 11 | T11K | aCa | aAa | 4 | 4 | B.1.258 | 0.000266 |
ORF8 | 11 | T11K | aCa | aAa | 4 | 4 | B.1.429 | 0.000094 |
ORF8 | 11 | T11K | aCa | aAa | 4 | 4 | B.1.533 | 0.038462 |
ORF8 | 11 | T11K | aCa | aAa | 4 | 4 | P.1.17 | 0.000647 |
ORF8 | 11 | T11K | aCa | aAa | 3 | 3 | AD.2 | 0.000657 |
ORF8 | 11 | T11K | aCa | aAa | 3 | 3 | AY.103 | 0.000019 |
ORF8 | 11 | T11K | aCa | aAa | 3 | 3 | AY.39.1 | 0.000119 |
ORF8 | 11 | T11K | aCa | aAa | 3 | 3 | AY.47 | 0.000093 |
ORF8 | 11 | T11K | aCa | aAa | 3 | 3 | AY.5 | 0.000062 |
ORF8 | 11 | T11K | aCa | aAa | 3 | 3 | B.1.1.519 | 0.000119 |
ORF8 | 11 | T11K | aCa | aAa | 3 | 3 | B.1.157 | 0.008955 |
ORF8 | 11 | T11K | aCa | aAa | 3 | 3 | B.1.160.23 | 0.014493 |
ORF8 | 11 | T11K | aCa | aAa | 3 | 3 | B.1.177.73 | 0.001699 |
ORF8 | 11 | T11K | aCa | aAa | 3 | 3 | B.1.223 | 0.008333 |
ORF8 | 11 | T11K | aCa | aAa | 3 | 3 | B.1.380 | 0.019868 |
ORF8 | 11 | T11K | aCa | aAa | 3 | 3 | B.1.561 | 0.001191 |
ORF8 | 11 | T11K | aCa | aAa | 3 | 3 | B.46 | 0.0625 |
ORF8 | 11 | T11K | aCa | aAa | 3 | 3 | C.36.3.1 | 0.008152 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | A.2 | 0.001324 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | AY.26 | 0.000057 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | AY.46.6 | 0.000144 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | AY.58 | 0.001815 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | AZ.4 | 0.006711 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | B.1.1.216 | 0.001781 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | B.1.1.277 | 0.001517 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | B.1.1.63 | 0.000772 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | B.1.160 | 0.000062 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | B.1.177.81 | 0.000379 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | B.1.279 | 0.001027 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | B.1.311 | 0.000549 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | B.1.36 | 0.000292 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | B.1.427 | 0.000101 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | B.1.459 | 0.008163 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | B.1.78 | 0.017094 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | C.36 | 0.001821 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | D.2 | 0.00015 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | P.1.14 | 0.000096 |
ORF8 | 11 | T11K | aCa | aAa | 2 | 2 | P.1.7 | 0.000639 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | A.1 | 0.000282 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | A.2.4 | 0.003367 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | A.2.5 | 0.000499 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AW.1 | 0.003049 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.113 | 0.000142 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.117 | 0.000085 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.119 | 0.000035 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.19 | 0.00114 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.23 | 0.00007 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.3.1 | 0.000085 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.33 | 0.000067 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.34 | 0.000097 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.4.3 | 0.000842 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.40 | 0.000964 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.41 | 0.000294 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.53 | 0.000288 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.54 | 0.000095 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.61 | 0.000105 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.62 | 0.000436 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.75.1 | 0.00018 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.79 | 0.001211 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.92 | 0.000287 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AY.93 | 0.000273 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | AZ.1 | 0.000867 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.1.135 | 0.004695 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.1.163 | 0.007634 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.1.231 | 0.003096 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.1.236 | 0.006897 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.1.297 | 0.002237 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.1.337 | 0.003597 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.1.434 | 0.000349 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.1.526 | 0.003546 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.110.3 | 0.000718 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.170 | 0.00431 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.177.86 | 0.000183 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.221 | 0.000071 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.240 | 0.000216 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.258.17 | 0.000104 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.351.5 | 0.0006 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.367 | 0.000792 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.396 | 0.000706 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.399 | 0.001934 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.405 | 0.012346 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.425 | 0.002994 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.428 | 0.00102 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.525 | 0.000113 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.564 | 0.000426 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.575 | 0.000303 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.575.1 | 0.002439 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.595 | 0.000261 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.596 | 0.000087 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.609 | 0.000479 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.619 | 0.000871 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.630 | 0.005236 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.633 | 0.041667 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.1.638 | 0.052632 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.29 | 0.003509 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.3.1 | 0.001658 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.55 | 0.00295 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | B.61 | 0.005747 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | C.37 | 0.000116 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | P.1.12 | 0.000484 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | P.1.16 | 0.000374 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | Q.3 | 0.000145 |
ORF8 | 11 | T11K | aCa | aAa | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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