CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 103 | S103S | syn | tcG | tcA | 3340 | 3040 | 0.91018 | 28200-28202 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 103 | S103S | tcG | tcA | 3040 | 3340 | All | 0.000581 |
ORF8 | 103 | S103S | tcG | tcA | 1896 | 1897 | AY.54 | 0.180778 |
ORF8 | 103 | S103S | tcG | tcA | 297 | 336 | B.1.617.2 | 0.001118 |
ORF8 | 103 | S103S | tcG | tcA | 133 | 135 | B.1.1 | 0.002413 |
ORF8 | 103 | S103S | tcG | tcA | 109 | 119 | AY.4 | 0.00017 |
ORF8 | 103 | S103S | tcG | tcA | 85 | 86 | AY.3 | 0.000845 |
ORF8 | 103 | S103S | tcG | tcA | 24 | 59 | B.1.2 | 0.000211 |
ORF8 | 103 | S103S | tcG | tcA | 31 | 43 | B.1.1.7 | 0.000028 |
ORF8 | 103 | S103S | tcG | tcA | 41 | 41 | B.1.178 | 0.97619 |
ORF8 | 103 | S103S | tcG | tcA | 37 | 40 | AY.108 | 0.040794 |
ORF8 | 103 | S103S | tcG | tcA | 23 | 38 | AY.103 | 0.000143 |
ORF8 | 103 | S103S | tcG | tcA | 36 | 36 | AY.26 | 0.001019 |
ORF8 | 103 | S103S | tcG | tcA | 28 | 33 | B.1 | 0.000256 |
ORF8 | 103 | S103S | tcG | tcA | 25 | 29 | AY.44 | 0.000152 |
ORF8 | 103 | S103S | tcG | tcA | 21 | 26 | AY.25 | 0.000126 |
ORF8 | 103 | S103S | tcG | tcA | 18 | 20 | AY.5 | 0.000372 |
ORF8 | 103 | S103S | tcG | tcA | 15 | 15 | B.1.526 | 0.000353 |
ORF8 | 103 | S103S | tcG | tcA | 4 | 14 | P.1 | 0.000063 |
ORF8 | 103 | S103S | tcG | tcA | 6 | 13 | AY.102 | 0.000159 |
ORF8 | 103 | S103S | tcG | tcA | 12 | 13 | C.37 | 0.001393 |
ORF8 | 103 | S103S | tcG | tcA | 11 | 11 | AY.119 | 0.000388 |
ORF8 | 103 | S103S | tcG | tcA | 11 | 11 | AY.61 | 0.001153 |
ORF8 | 103 | S103S | tcG | tcA | 10 | 10 | AY.7.1 | 0.001127 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 8 | B.1.160 | 0.000031 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 7 | AY.100 | 0.000092 |
ORF8 | 103 | S103S | tcG | tcA | 6 | 7 | AY.39 | 0.000148 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 7 | B.1.1.216 | 0.00089 |
ORF8 | 103 | S103S | tcG | tcA | 7 | 7 | B.1.435 | 0.079545 |
ORF8 | 103 | S103S | tcG | tcA | 6 | 6 | AY.23.1 | 0.002504 |
ORF8 | 103 | S103S | tcG | tcA | 6 | 6 | B.1.177 | 0.000079 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 5 | AY.43 | 0.000009 |
ORF8 | 103 | S103S | tcG | tcA | 5 | 5 | AY.46 | 0.00052 |
ORF8 | 103 | S103S | tcG | tcA | 4 | 5 | B.1.234 | 0.000528 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 4 | AY.116 | 0.000287 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 4 | AY.33 | 0.000134 |
ORF8 | 103 | S103S | tcG | tcA | 4 | 4 | AY.48 | 0.00186 |
ORF8 | 103 | S103S | tcG | tcA | 4 | 4 | AY.98.1 | 0.000194 |
ORF8 | 103 | S103S | tcG | tcA | 4 | 4 | B.1.1.277 | 0.003035 |
ORF8 | 103 | S103S | tcG | tcA | 4 | 4 | B.1.1.376 | 0.02381 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 4 | B.1.243 | 0.000139 |
ORF8 | 103 | S103S | tcG | tcA | 4 | 4 | B.1.397 | 0.019417 |
ORF8 | 103 | S103S | tcG | tcA | 3 | 4 | B.1.429 | 0.000071 |
ORF8 | 103 | S103S | tcG | tcA | 4 | 4 | B.1.9.5 | 0.022727 |
ORF8 | 103 | S103S | tcG | tcA | 4 | 4 | P.2 | 0.000747 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 3 | A.23.1 | 0.001408 |
ORF8 | 103 | S103S | tcG | tcA | 3 | 3 | AY.10 | 0.00159 |
ORF8 | 103 | S103S | tcG | tcA | 3 | 3 | AY.118 | 0.000188 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 3 | AY.120 | 0.000037 |
ORF8 | 103 | S103S | tcG | tcA | 3 | 3 | AY.20 | 0.000117 |
ORF8 | 103 | S103S | tcG | tcA | 3 | 3 | AY.98 | 0.000237 |
ORF8 | 103 | S103S | tcG | tcA | 3 | 3 | B | 0.000383 |
ORF8 | 103 | S103S | tcG | tcA | 3 | 3 | B.1.36.17 | 0.001482 |
ORF8 | 103 | S103S | tcG | tcA | 3 | 3 | B.1.36.29 | 0.001552 |
ORF8 | 103 | S103S | tcG | tcA | 3 | 3 | B.1.409 | 0.002344 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 2 | AY.117 | 0.000169 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 2 | AY.16 | 0.000759 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 2 | AY.23 | 0.00007 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 2 | AY.27 | 0.000065 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 2 | AY.29 | 0.000016 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 2 | AY.32 | 0.001065 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 2 | AY.36 | 0.000296 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 2 | AY.4.2 | 0.000022 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 2 | AY.9.2 | 0.000073 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 2 | B.1.1.161 | 0.007067 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 2 | B.1.1.222 | 0.000408 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 2 | B.1.177.7 | 0.000165 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 2 | B.1.596 | 0.000174 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 2 | B.1.609 | 0.000479 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 2 | B.1.621 | 0.000177 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 2 | B.1.628 | 0.000352 |
ORF8 | 103 | S103S | tcG | tcA | 2 | 2 | D.2 | 0.00015 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.101 | 0.00049 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.110 | 0.000113 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.29.1 | 0.000221 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.30 | 0.000396 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.31 | 0.018519 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.34 | 0.000097 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.40 | 0.000964 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.42 | 0.00004 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.45 | 0.000122 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.46.4 | 0.000165 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.46.6 | 0.000072 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.6 | 0.000041 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.62 | 0.000436 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.65 | 0.000533 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.73 | 0.000665 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.75 | 0.000056 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.75.1 | 0.00018 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.8 | 0.000606 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.85 | 0.000427 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.91 | 0.00073 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.99.1 | 0.001553 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | AY.99.2 | 0.000092 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.1.220 | 0.001859 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.1.372 | 0.000689 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.1.409 | 0.002833 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.1.518 | 0.006329 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.258 | 0.000067 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.258.2 | 0.004505 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.351 | 0.00003 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.36.18 | 0.00042 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.36.26 | 0.002857 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.36.36 | 0.000602 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.427 | 0.00005 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.459 | 0.004082 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.525 | 0.000113 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.558 | 0.004566 |
ORF8 | 103 | S103S | tcG | tcA | 1 | 1 | B.1.91 | 0.002075 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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