CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF8 | 10 | I10T | nonsyn | aTc | aCc | 2512 | 2511 | 0.999602 | 27921-27923 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF8 | 10 | I10T | aTc | aCc | 2511 | 2512 | All | 0.00048 |
ORF8 | 10 | I10T | aTc | aCc | 444 | 444 | B.1.1.297 | 0.993289 |
ORF8 | 10 | I10T | aTc | aCc | 306 | 306 | B.1.617.1 | 0.039464 |
ORF8 | 10 | I10T | aTc | aCc | 267 | 267 | B.1.1.7 | 0.000239 |
ORF8 | 10 | I10T | aTc | aCc | 220 | 220 | B.1.526 | 0.005171 |
ORF8 | 10 | I10T | aTc | aCc | 191 | 191 | B.1.36 | 0.027867 |
ORF8 | 10 | I10T | aTc | aCc | 143 | 143 | B.1.2 | 0.001259 |
ORF8 | 10 | I10T | aTc | aCc | 84 | 84 | AY.4 | 0.000131 |
ORF8 | 10 | I10T | aTc | aCc | 62 | 63 | B.1.1 | 0.001125 |
ORF8 | 10 | I10T | aTc | aCc | 60 | 60 | AY.44 | 0.000365 |
ORF8 | 10 | I10T | aTc | aCc | 51 | 51 | B.1 | 0.000467 |
ORF8 | 10 | I10T | aTc | aCc | 51 | 51 | B.1.621 | 0.004514 |
ORF8 | 10 | I10T | aTc | aCc | 43 | 43 | AY.25 | 0.000259 |
ORF8 | 10 | I10T | aTc | aCc | 36 | 36 | AY.103 | 0.000224 |
ORF8 | 10 | I10T | aTc | aCc | 34 | 34 | B.1.1.486 | 0.053628 |
ORF8 | 10 | I10T | aTc | aCc | 31 | 31 | AY.43 | 0.000137 |
ORF8 | 10 | I10T | aTc | aCc | 30 | 30 | AY.26 | 0.000849 |
ORF8 | 10 | I10T | aTc | aCc | 30 | 30 | B.1.617.2 | 0.000113 |
ORF8 | 10 | I10T | aTc | aCc | 24 | 24 | B.1.1.519 | 0.000953 |
ORF8 | 10 | I10T | aTc | aCc | 23 | 23 | AY.3 | 0.000229 |
ORF8 | 10 | I10T | aTc | aCc | 23 | 23 | B.1.177 | 0.000303 |
ORF8 | 10 | I10T | aTc | aCc | 19 | 19 | AY.9.1 | 0.001591 |
ORF8 | 10 | I10T | aTc | aCc | 18 | 18 | AY.47 | 0.00056 |
ORF8 | 10 | I10T | aTc | aCc | 17 | 17 | P.1 | 0.000268 |
ORF8 | 10 | I10T | aTc | aCc | 16 | 16 | B.1.258.3 | 0.026801 |
ORF8 | 10 | I10T | aTc | aCc | 16 | 16 | B.1.361 | 0.020619 |
ORF8 | 10 | I10T | aTc | aCc | 15 | 15 | AG.1 | 1 |
ORF8 | 10 | I10T | aTc | aCc | 14 | 14 | B.1.438.1 | 0.001502 |
ORF8 | 10 | I10T | aTc | aCc | 13 | 13 | C.36 | 0.01184 |
ORF8 | 10 | I10T | aTc | aCc | 12 | 12 | P.1.7 | 0.003831 |
ORF8 | 10 | I10T | aTc | aCc | 10 | 10 | AY.29 | 0.000158 |
ORF8 | 10 | I10T | aTc | aCc | 9 | 9 | B.1.160 | 0.000281 |
ORF8 | 10 | I10T | aTc | aCc | 9 | 9 | B.1.177.62 | 0.010727 |
ORF8 | 10 | I10T | aTc | aCc | 8 | 8 | AY.102 | 0.000212 |
ORF8 | 10 | I10T | aTc | aCc | 8 | 8 | B.1.1.50 | 0.005431 |
ORF8 | 10 | I10T | aTc | aCc | 7 | 7 | AY.39 | 0.000173 |
ORF8 | 10 | I10T | aTc | aCc | 7 | 7 | B.1.1.33 | 0.002946 |
ORF8 | 10 | I10T | aTc | aCc | 6 | 6 | AY.98.1 | 0.000291 |
ORF8 | 10 | I10T | aTc | aCc | 6 | 6 | B.1.1.277 | 0.004552 |
ORF8 | 10 | I10T | aTc | aCc | 6 | 6 | B.1.1.39 | 0.003058 |
ORF8 | 10 | I10T | aTc | aCc | 6 | 6 | B.1.429 | 0.000141 |
ORF8 | 10 | I10T | aTc | aCc | 6 | 6 | B.1.596 | 0.000523 |
ORF8 | 10 | I10T | aTc | aCc | 5 | 5 | B.1.1.291 | 0.003712 |
ORF8 | 10 | I10T | aTc | aCc | 4 | 4 | A.23.1 | 0.002817 |
ORF8 | 10 | I10T | aTc | aCc | 4 | 4 | AY.23 | 0.000279 |
ORF8 | 10 | I10T | aTc | aCc | 4 | 4 | AY.4.2 | 0.000087 |
ORF8 | 10 | I10T | aTc | aCc | 4 | 4 | B.1.223 | 0.011111 |
ORF8 | 10 | I10T | aTc | aCc | 3 | 3 | AY.14 | 0.000264 |
ORF8 | 10 | I10T | aTc | aCc | 3 | 3 | AY.20 | 0.000117 |
ORF8 | 10 | I10T | aTc | aCc | 3 | 3 | AY.3.1 | 0.000256 |
ORF8 | 10 | I10T | aTc | aCc | 3 | 3 | AY.91 | 0.002191 |
ORF8 | 10 | I10T | aTc | aCc | 3 | 3 | B.1.1.10 | 0.003344 |
ORF8 | 10 | I10T | aTc | aCc | 3 | 3 | B.1.110.3 | 0.002155 |
ORF8 | 10 | I10T | aTc | aCc | 3 | 3 | B.1.177.82 | 0.001432 |
ORF8 | 10 | I10T | aTc | aCc | 3 | 3 | B.1.243 | 0.000209 |
ORF8 | 10 | I10T | aTc | aCc | 3 | 3 | B.1.351 | 0.000089 |
ORF8 | 10 | I10T | aTc | aCc | 3 | 3 | B.1.36.8 | 0.003 |
ORF8 | 10 | I10T | aTc | aCc | 3 | 3 | P.2 | 0.00056 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | AD.1 | 0.00823 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | AY.2 | 0.000712 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | AY.24 | 0.000862 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | AY.45 | 0.000243 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | AY.46.6 | 0.000144 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | AY.5 | 0.000041 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | AY.59 | 0.001059 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | AY.6 | 0.000082 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | B.1.1.28 | 0.000622 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | B.1.258 | 0.000133 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | B.1.258.17 | 0.000208 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | B.1.409 | 0.001563 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | C.37 | 0.000232 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | N.5 | 0.003534 |
ORF8 | 10 | I10T | aTc | aCc | 2 | 2 | P.1.14 | 0.000096 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | 0.055556 | |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | A | 0.000387 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AD.2 | 0.000219 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.106 | 0.000335 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.109 | 0.00074 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.117 | 0.000085 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.120 | 0.000037 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.23.1 | 0.000417 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.33 | 0.000067 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.36 | 0.000148 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.38 | 0.000499 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.46.4 | 0.000165 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.52 | 0.000814 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.53 | 0.000288 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.62 | 0.000436 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.65 | 0.000533 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.71 | 0.000475 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.74 | 0.000116 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.75 | 0.000056 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.75.1 | 0.00018 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.77 | 0.001127 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.89 | 0.004902 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | AY.9.2 | 0.000037 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.1.222 | 0.000204 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.1.311 | 0.000358 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.1.409 | 0.002833 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.1.61 | 0.008772 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.157 | 0.002985 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.177.2 | 0.004545 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.177.60 | 0.000218 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.234 | 0.000132 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.239 | 0.001221 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.240 | 0.000216 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.311 | 0.000275 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.36.29 | 0.000517 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.427 | 0.00005 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.456 | 0.003268 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.497 | 0.000315 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.551 | 0.00129 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.565 | 0.00081 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.609 | 0.000479 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | B.1.619 | 0.000871 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | P.1.12 | 0.000484 |
ORF8 | 10 | I10T | aTc | aCc | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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