CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : Mut = T40S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b40T40SnonsynaCtaGt1131050.92920427873-27875
ORF7b40T40SnonsynActTct11350.044247827873-27875
ORF7b40T40SnonsynAcTTcC11320.017699127873-27875
ORF7b40T40SnonsynaCTaGC11310.0088495627873-27875

Details of the mutation T40S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b40T40SaCtaGt105113All0.00002
ORF7b40T40SActTct5113All0.000001
ORF7b40T40SAcTTcC2113All0
ORF7b40T40SaCTaGC1113All0
ORF7b40T40SaCtaGt4747B.1.1.70.000042
ORF7b40T40SaCtaGt1719B.1.617.20.000064
ORF7b40T40SActTct119B.1.617.20.000004
ORF7b40T40SaCTaGC119B.1.617.20.000004
ORF7b40T40SaCtaGt1010AY.1000.00046
ORF7b40T40SaCtaGt55B.1.5260.000118
ORF7b40T40SaCtaGt44B.1.20.000035
ORF7b40T40SaCtaGt33AY.40.000005
ORF7b40T40SaCtaGt33B.10.000027
ORF7b40T40SaCtaGt220.111111
ORF7b40T40SaCtaGt22AY.250.000012
ORF7b40T40SaCtaGt22B.1.1.100.00223
ORF7b40T40SAcTTcC22B.1.1.4330.002849
ORF7b40T40SaCtaGt22B.1.6210.000177
ORF7b40T40SaCtaGt11AY.1030.000006
ORF7b40T40SaCtaGt11AY.1130.000142
ORF7b40T40SaCtaGt11AY.1170.000085
ORF7b40T40SaCtaGt11AY.440.000006
ORF7b40T40SActTct11AY.980.000079
ORF7b40T40SActTct11B.1.10.000018
ORF7b40T40SaCtaGt11B.1.1.330.000421
ORF7b40T40SaCtaGt11B.1.1770.000013
ORF7b40T40SActTct11B.1.2580.000067
ORF7b40T40SActTct11B.1.351.20.000303
ORF7b40T40SaCtaGt11B.1.4290.000024
ORF7b40T40SaCtaGt11P.10.000016