CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : Mut = T40N

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b40T40NnonsynaCtaAt1281260.98437527873-27875
ORF7b40T40NnonsynaCTaAC12820.01562527873-27875

Details of the mutation T40N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b40T40NaCtaAt126128All0.000024
ORF7b40T40NaCTaAC2128All0
ORF7b40T40NaCtaAt7878P.1.60.151751
ORF7b40T40NaCtaAt1010B.1.1.70.000009
ORF7b40T40NaCtaAt66P.10.000095
ORF7b40T40NaCtaAt55AY.430.000022
ORF7b40T40NaCtaAt44B.1.10.000073
ORF7b40T40NaCtaAt220.111111
ORF7b40T40NaCtaAt22AY.470.000062
ORF7b40T40NaCtaAt22B.1.1600.000062
ORF7b40T40NaCTaAC12B.1.1770.000013
ORF7b40T40NaCtaAt12B.1.1770.000013
ORF7b40T40NaCtaAt22B.1.2210.000142
ORF7b40T40NaCtaAt22B.1.617.20.000008
ORF7b40T40NaCtaAt22B.1.6210.000177
ORF7b40T40NaCtaAt11AY.1050.000643
ORF7b40T40NaCtaAt11AY.75.10.00018
ORF7b40T40NaCtaAt11B.10.000009
ORF7b40T40NaCtaAt11B.1.1.2140.000055
ORF7b40T40NaCTaAC11B.1.1.290.010309
ORF7b40T40NaCtaAt11B.1.1.3880.045455
ORF7b40T40NaCtaAt11B.1.177.600.000218
ORF7b40T40NaCtaAt11B.1.177.70.000165
ORF7b40T40NaCtaAt11B.1.177.750.001041
ORF7b40T40NaCtaAt11B.1.3690.000285
ORF7b40T40NaCtaAt11B.1.5960.000087

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.