CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : Mut = T40I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b40T40InonsynaCtaTt238332223813700.99918127873-27875
ORF7b40T40InonsynaCTaTC238332219400.0008139927873-27875
ORF7b40T40InonsynaCTaTA2383322120.0000050349927873-27875

Details of the mutation T40I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b40T40IaCtaTt23813702383322All0.455465
ORF7b40T40IaCTaTC19402383322All0.000371
ORF7b40T40IaCTaTA122383322All0.000002
ORF7b40T40IaCtaTt631649631721AY.40.983113
ORF7b40T40IaCTaTC71631721AY.40.000111
ORF7b40T40IaCTaTA1631721AY.40.000002
ORF7b40T40IaCtaTt220158221069B.1.617.20.828986
ORF7b40T40IaCTaTC909221069B.1.617.20.003423
ORF7b40T40IaCTaTA2221069B.1.617.20.000008
ORF7b40T40IaCtaTt202048202130AY.430.895166
ORF7b40T40IaCTaTC78202130AY.430.000346
ORF7b40T40IaCTaTA4202130AY.430.000018
ORF7b40T40IaCtaTt165065165090AY.250.992836
ORF7b40T40IaCTaTC25165090AY.250.00015
ORF7b40T40IaCtaTt161712161721AY.440.984302
ORF7b40T40IaCTaTC9161721AY.440.000055
ORF7b40T40IaCtaTt159673159680AY.1030.991419
ORF7b40T40IaCTaTC7159680AY.1030.000043
ORF7b40T40IaCtaTt9988099886AY.30.993445
ORF7b40T40IaCTaTC599886AY.30.00005
ORF7b40T40IaCTaTA199886AY.30.00001
ORF7b40T40IaCtaTt6327663276AY.290.998091
ORF7b40T40IaCtaTt4784547857AY.50.987962
ORF7b40T40IaCTaTC1247857AY.50.000248
ORF7b40T40IaCtaTt4590045927AY.4.20.99551
ORF7b40T40IaCTaTC2745927AY.4.20.000586
ORF7b40T40IaCtaTt3924139241AY.390.969704
ORF7b40T40IaCtaTt3756037560AY.1020.995864
ORF7b40T40IaCtaTt2807828082AY.1190.991385
ORF7b40T40IaCTaTC428082AY.1190.000141
ORF7b40T40IaCtaTt2638626387AY.1200.981002
ORF7b40T40IaCTaTC126387AY.1200.000037
ORF7b40T40IaCtaTt2552225523AY.200.991916
ORF7b40T40IaCTaTC125523AY.200.000039
ORF7b40T40IaCtaTt2511225133AY.39.10.994771
ORF7b40T40IaCTaTC2125133AY.39.10.000832
ORF7b40T40IaCtaTt2455524557AY.420.987851
ORF7b40T40IaCTaTC224557AY.420.00008
ORF7b40T40IaCtaTt2419324195AY.60.995023
ORF7b40T40IaCTaTC224195AY.60.000082
ORF7b40T40IaCtaTt2141721436AY.1000.985324
ORF7b40T40IaCTaTC1521436AY.1000.00069
ORF7b40T40IaCTaTA421436AY.1000.000184
ORF7b40T40IaCtaTt2028120284AY.98.10.982226
ORF7b40T40IaCTaTC320284AY.98.10.000145
ORF7b40T40IaCtaTt1578915790AY.1180.989162
ORF7b40T40IaCTaTC115790AY.1180.000063
ORF7b40T40IaCtaTt1478514788AY.330.987312
ORF7b40T40IaCTaTC314788AY.330.0002
ORF7b40T40IaCtaTt1383913839AY.230.965265
ORF7b40T40IaCtaTt1363713637AY.46.60.984692
ORF7b40T40IaCtaTt1176512347AY.980.929378
ORF7b40T40IaCTaTC58212347AY.980.045975
ORF7b40T40IaCtaTt1168811688AY.3.10.996504
ORF7b40T40IaCtaTt1153711538AY.1170.975068
ORF7b40T40IaCTaTC111538AY.1170.000085
ORF7b40T40IaCtaTt1069910700AY.99.20.985992
ORF7b40T40IaCTaTC110700AY.99.20.000092
ORF7b40T40IaCtaTt1018810188AY.340.987879
ORF7b40T40IaCtaTt92559257AY.4.50.99484
ORF7b40T40IaCTaTC29257AY.4.50.000215
ORF7b40T40IaCtaTt92549255AY.460.963156
ORF7b40T40IaCTaTC19255AY.460.000104
ORF7b40T40IaCtaTt88468846AY.7.10.996957
ORF7b40T40IaCtaTt79877990AY.450.971891
ORF7b40T40IaCTaTC37990AY.450.000365
ORF7b40T40IaCtaTt72877287AY.1210.986062
ORF7b40T40IaCtaTt67956795AY.1130.967535
ORF7b40T40IaCtaTt66516651AY.360.985771
ORF7b40T40IaCtaTt66266626AY.4.2.10.987187
ORF7b40T40IaCtaTt60546054AY.46.40.995887
ORF7b40T40IaCtaTt54305430AY.1110.994505
ORF7b40T40IaCtaTt50745074AY.70.994512
ORF7b40T40IaCtaTt50355035AY.46.50.999008
ORF7b40T40IaCtaTt45214522AY.29.10.996913
ORF7b40T40IaCTaTC14522AY.29.10.000221
ORF7b40T40IaCtaTt42844285AY.1140.990062
ORF7b40T40IaCTaTC14285AY.1140.000231
ORF7b40T40IaCtaTt42134213AY.1100.474758
ORF7b40T40IaCtaTt34983498AY.5.40.967903
ORF7b40T40IaCtaTt34813481AY.930.950573
ORF7b40T40IaCtaTt34093409AY.1160.977631
ORF7b40T40IaCtaTt33523352AY.410.985303
ORF7b40T40IaCtaTt32593264AY.920.936225
ORF7b40T40IaCTaTC53264AY.920.001436
ORF7b40T40IaCtaTt32003200AY.116.10.996574
ORF7b40T40IaCtaTt30923092AY.120.10.992616
ORF7b40T40IaCtaTt30823082AY.120.974083
ORF7b40T40IaCtaTt29142915AY.5.30.983131
ORF7b40T40IaCTaTC12915AY.5.30.000337
ORF7b40T40IaCtaTt24972497AY.10.988128
ORF7b40T40IaCtaTt24152415AY.4.40.988134
ORF7b40T40IaCtaTt23962396AY.23.11
ORF7b40T40IaCtaTt23052305AY.850.984622
ORF7b40T40IaCtaTt22772277AY.1060.762559
ORF7b40T40IaCtaTt22432243AY.840.98119
ORF7b40T40IaCtaTt22432243AY.940.992917
ORF7b40T40IaCtaTt21232123AY.1070.989282
ORF7b40T40IaCtaTt20232023AY.1010.992153
ORF7b40T40IaCtaTt20032003AY.120.2.10.998007
ORF7b40T40IaCtaTt19441944AY.34.10.991331
ORF7b40T40IaCtaTt18121813AY.320.964856
ORF7b40T40IaCTaTC11813AY.320.000532
ORF7b40T40IaCtaTt17671767AY.7.20.988255
ORF7b40T40IaCtaTt14621462AY.1050.940193
ORF7b40T40IaCtaTt14481448AY.900.991102
ORF7b40T40IaCtaTt14281428AY.46.20.907243
ORF7b40T40IaCtaTt13761376AY.39.1.10.997101
ORF7b40T40IaCtaTt13551356AY.4.10.999263
ORF7b40T40IaCTaTC11356AY.4.10.000737
ORF7b40T40IaCtaTt13391339AY.1090.990385
ORF7b40T40IaCtaTt13391339AY.910.978086
ORF7b40T40IaCtaTt12691270AY.950.965753
ORF7b40T40IaCTaTC11270AY.950.000761
ORF7b40T40IaCtaTt11791179AY.870.981682
ORF7b40T40IaCtaTt11631163AY.860.965145
ORF7b40T40IaCtaTt11451145AY.4.30.963805
ORF7b40T40IaCtaTt10871087AY.880.961096
ORF7b40T40IaCtaTt10571058AY.46.30.986928
ORF7b40T40IaCTaTC11058AY.46.30.000934
ORF7b40T40IaCtaTt962962AY.46.10.98768
ORF7b40T40IaCtaTt953955AY.470.029643
ORF7b40T40IaCTaTC2955AY.470.000062
ORF7b40T40IaCtaTt934935AY.750.052325
ORF7b40T40IaCTaTC1935AY.750.000056
ORF7b40T40IaCtaTt922924B.10.008445
ORF7b40T40IaCTaTC2924B.10.000018
ORF7b40T40IaCtaTt873921B.1.1.70.000782
ORF7b40T40IaCTaTC48921B.1.1.70.000043
ORF7b40T40IaCtaTt905905AY.990.949633
ORF7b40T40IaCtaTt882882AY.800.995485
ORF7b40T40IaCtaTt837837AY.770.94363
ORF7b40T40IaCtaTt819819AY.790.991525
ORF7b40T40IaCtaTt760760AY.1080.837927
ORF7b40T40IaCtaTt734734AY.9.20.02696
ORF7b40T40IaCtaTt722722AY.120.20.928021
ORF7b40T40IaCtaTt668668AY.820.906377
ORF7b40T40IaCtaTt646646AY.39.20.995378
ORF7b40T40IaCtaTt631631AY.99.10.979814
ORF7b40T40IaCtaTt617617AY.780.950693
ORF7b40T40IaCtaTt608608AY.730.404524
ORF7b40T40IaCtaTt583583AY.970.991497
ORF7b40T40IaCtaTt560560AY.830.965517
ORF7b40T40IaCtaTt506506AY.680.138516
ORF7b40T40IaCtaTt496496AY.1040.984127
ORF7b40T40IaCtaTt486486AY.810.968127
ORF7b40T40IaCtaTt470470AY.220.983264
ORF7b40T40IaCtaTt464464AY.210.880455
ORF7b40T40IaCtaTt432432AY.550.39633
ORF7b40T40IaCtaTt428428AY.960.887967
ORF7b40T40IaCtaTt400400AY.5.20.985222
ORF7b40T40IaCtaTt387387AY.740.044755
ORF7b40T40IaCtaTt326326AY.540.031083
ORF7b40T40IaCtaTt286286AY.580.259528
ORF7b40T40IaCtaTt278280AY.190.31699
ORF7b40T40IaCTaTC2280AY.190.002281
ORF7b40T40IaCtaTt273273AY.590.144597
ORF7b40T40IaCtaTt266266AY.5.11
ORF7b40T40IaCtaTt259259AY.75.10.0467
ORF7b40T40IaCtaTt247248AY.260.006993
ORF7b40T40IaCTaTC1248AY.260.000028
ORF7b40T40IaCtaTt243243AY.91.10.987805
ORF7b40T40IaCtaTt233234B0.02978
ORF7b40T40IaCTaTC1234B0.000128
ORF7b40T40IaCtaTt209209B.1.1.3970.470721
ORF7b40T40IaCtaTt205205AY.760.990338
ORF7b40T40IaCtaTt204204AY.891
ORF7b40T40IaCtaTt200200AY.520.162866
ORF7b40T40IaCtaTt190190AY.1150.989583
ORF7b40T40IaCtaTt188188AY.530.054054
ORF7b40T40IaCtaTt183184B.1.10.00332
ORF7b40T40IaCTaTC1184B.1.10.000018
ORF7b40T40IaCtaTt179179AY.690.033414
ORF7b40T40IaCtaTt169169AY.620.073638
ORF7b40T40IaCtaTt168168AY.670.077994
ORF7b40T40IaCtaTt165165AY.640.098214
ORF7b40T40IaCtaTt159159AY.100.084261
ORF7b40T40IaCtaTt149149AY.560.239165
ORF7b40T40IaCtaTt144147AY.370.045512
ORF7b40T40IaCTaTC3147AY.370.000948
ORF7b40T40IaCtaTt136136AY.160.051632
ORF7b40T40IaCtaTt133133AY.630.051451
ORF7b40T40IaCtaTt108108AY.570.070866
ORF7b40T40IaCtaTt105105B.1.1.630.040509
ORF7b40T40IaCtaTt101101AY.140.008889
ORF7b40T40IaCtaTt9999P.10.00156
ORF7b40T40IaCtaTt9797AY.130.015615
ORF7b40T40IaCtaTt9494AY.700.0196
ORF7b40T40IaCtaTt9494B.1.5960.008191
ORF7b40T40IaCtaTt9090AY.400.086789
ORF7b40T40IaCtaTt8383AY.350.019343
ORF7b40T40IaCtaTt8181AY.480.037674
ORF7b40T40IaCtaTt8080AY.240.034483
ORF7b40T40IaCtaTt7171B.1.1.5190.002819
ORF7b40T40IaCtaTt5762B.1.20.000502
ORF7b40T40IaCTaTC562B.1.20.000044
ORF7b40T40IaCtaTt6161AY.600.057223
ORF7b40T40IaCtaTt6161AY.650.032516
ORF7b40T40IaCtaTt6161B.1.6210.0054
ORF7b40T40IaCtaTt5656AY.710.026603
ORF7b40T40IaCtaTt5353AY.110.07095
ORF7b40T40IaCtaTt5353B.1.177.530.126794
ORF7b40T40IaCtaTt5353B.1.177.810.010034
ORF7b40T40IaCtaTt5151B.1.1.2140.002828
ORF7b40T40IaCTaTC4949B.1.1.290.505155
ORF7b40T40IaCtaTt4747B.1.4290.001106
ORF7b40T40IaCtaTt4445AY.380.021967
ORF7b40T40IaCTaTC145AY.380.000499
ORF7b40T40IaCtaTt3939AY.610.004086
ORF7b40T40IaCtaTt3737AY.500.029576
ORF7b40T40IaCtaTt3333B.1.1770.000435
ORF7b40T40IaCtaTt3232AY.490.102236
ORF7b40T40IaCtaTt3030AY.170.245902
ORF7b40T40IaCtaTt2627B.1.1600.000811
ORF7b40T40IaCTaTC127B.1.1600.000031
ORF7b40T40IaCtaTt2525AY.300.009893
ORF7b40T40IaCtaTt2324C.370.002669
ORF7b40T40IaCTaTC124C.370.000116
ORF7b40T40IaCtaTt2323B.1.617.10.002966
ORF7b40T40IaCtaTt2121AY.280.039698
ORF7b40T40IaCtaTt2121AY.510.019091
ORF7b40T40IaCtaTt1919AY.90.001284
ORF7b40T40IaCtaTt1919B.1.1.270.107345
ORF7b40T40IaCtaTt1818AY.9.10.001507
ORF7b40T40IaCtaTt1616AY.660.017112
ORF7b40T40IaCtaTt1515AY.16.10.007049
ORF7b40T40IaCtaTt1515B.1.5090.012987
ORF7b40T40IaCtaTt1515P.1.140.000717
ORF7b40T40IaCtaTt1414B.1.3510.000416
ORF7b40T40IaCtaTt1313AY.80.007879
ORF7b40T40IaCtaTt1313P.1.170.002103
ORF7b40T40IaCtaTt1212AY.270.000777
ORF7b40T40IaCtaTt1212B.1.360.001751
ORF7b40T40IaCtaTt1212B.1.5260.000282
ORF7b40T40IaCtaTt1111B.1.2580.000732
ORF7b40T40IaCtaTt1111P.1.70.003512
ORF7b40T40IaCtaTt1010AY.720.013605
ORF7b40T40IaCtaTt1010B.1.1.3060.004384
ORF7b40T40IaCtaTt1010B.1.1.5260.035461
ORF7b40T40IaCtaTt99B.1.4850.134328
ORF7b40T40IaCtaTt78A0.002709
ORF7b40T40IaCTaTC18A0.000387
ORF7b40T40IaCTaTC68B.1.1.2770.004552
ORF7b40T40IaCtaTt28B.1.1.2770.001517
ORF7b40T40IaCtaTt88B.1.3400.034335
ORF7b40T40IaCtaTt88B.1.4270.000404
ORF7b40T40IaCtaTt88B.1.5760.007253
ORF7b40T40IaCtaTt88B.1.6230.004292
ORF7b40T40IaCtaTt88P.1.150.001859
ORF7b40T40IaCtaTt77B.1.1.3240.368421
ORF7b40T40IaCtaTt77B.1.177.120.001062
ORF7b40T40IaCtaTt77B.1.466.20.002739
ORF7b40T40IaCtaTt77C.1.20.029787
ORF7b40T40IaCtaTt77C.37.10.018325
ORF7b40T40IaCtaTt77P.1.10.002224
ORF7b40T40IaCtaTt77P.1.120.003388
ORF7b40T40IaCtaTt66B.1.1.280.001867
ORF7b40T40IaCtaTt66B.1.1.3170.00247
ORF7b40T40IaCtaTt66B.1.177.570.001686
ORF7b40T40IaCtaTt66B.1.2400.001293
ORF7b40T40IaCtaTt66B.1.3750.004918
ORF7b40T40IaCtaTt66B.1.6090.002876
ORF7b40T40IaCtaTt46B.1.6370.000292
ORF7b40T40IaCTaTC26B.1.6370.000146
ORF7b40T40IaCtaTt55B.1.1.530.068493
ORF7b40T40IaCtaTt55B.1.214.20.002998
ORF7b40T40IaCtaTt55B.1.2210.000355
ORF7b40T40IaCtaTt440.222222
ORF7b40T40IaCtaTt44A.20.002647
ORF7b40T40IaCtaTt44AY.150.008889
ORF7b40T40IaCtaTt44AY.20.001425
ORF7b40T40IaCtaTt44B.1.1.10.001307
ORF7b40T40IaCtaTt44B.1.1.3700.050633
ORF7b40T40IaCtaTt44B.1.1.5230.00625
ORF7b40T40IaCtaTt34B.1.177.210.000229
ORF7b40T40IaCTaTC14B.1.177.210.000076
ORF7b40T40IaCtaTt44B.1.177.720.013559
ORF7b40T40IaCtaTt44B.1.177.730.002265
ORF7b40T40IaCtaTt44B.1.221.20.016064
ORF7b40T40IaCtaTt44B.1.258.170.000416
ORF7b40T40IaCTaTC44B.1.3110.001098
ORF7b40T40IaCtaTt44C.36.3.10.01087
ORF7b40T40IaCtaTt44P.1.100.001078
ORF7b40T40IaCtaTt34Q.80.000495
ORF7b40T40IaCTaTC14Q.80.000165
ORF7b40T40IaCtaTt33A.270.004967
ORF7b40T40IaCtaTt33B.1.1.1170.029126
ORF7b40T40IaCtaTt33B.1.1.1610.010601
ORF7b40T40IaCtaTt33B.1.1.250.001706
ORF7b40T40IaCTaTC23B.1.1.2840.000215
ORF7b40T40IaCtaTt13B.1.1.2840.000107
ORF7b40T40IaCtaTt33B.1.1460.012712
ORF7b40T40IaCtaTt33B.1.2140.010989
ORF7b40T40IaCtaTt33B.1.2430.000209
ORF7b40T40IaCtaTt33B.1.3350.030928
ORF7b40T40IaCtaTt33B.1.3670.002377
ORF7b40T40IaCtaTt33B.1.3690.000856
ORF7b40T40IaCtaTt33B.1.5240.004219
ORF7b40T40IaCtaTt33B.1.5800.012195
ORF7b40T40IaCtaTt33B.1.6040.051724
ORF7b40T40IaCtaTt23B.1.6270.00404
ORF7b40T40IaCTaTC13B.1.6270.00202
ORF7b40T40IaCtaTt33B.1.6290.04
ORF7b40T40IaCtaTt23B.40.004415
ORF7b40T40IaCTaTC13B.40.002208
ORF7b40T40IaCtaTt33B.550.00885
ORF7b40T40IaCtaTt33B.60.00273
ORF7b40T40IaCtaTt33C.260.022059
ORF7b40T40IaCtaTt33Q.10.000379
ORF7b40T40IaCtaTt22A.210.00554
ORF7b40T40IaCtaTt22AU.30.004219
ORF7b40T40IaCtaTt22AZ.20.001642
ORF7b40T40IaCtaTt22B.1.1.1760.000879
ORF7b40T40IaCtaTt22B.1.1.2160.001781
ORF7b40T40IaCtaTt22B.1.1.2300.018349
ORF7b40T40IaCtaTt22B.1.1.2730.013514
ORF7b40T40IaCtaTt22B.1.1.2940.002532
ORF7b40T40IaCTaTC22B.1.1.3080.023529
ORF7b40T40IaCtaTt22B.1.1.3180.000604
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