CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : Mut = S5L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b5S5LnonsyntCatTa11323113080.99867527768-27770
ORF7b5S5LnonsyntCAtTG11323120.0010597927768-27770
ORF7b5S5LnonsynTCaCTa1132320.00017663227768-27770
ORF7b5S5LnonsynTCACTG1132310.000088315827768-27770

Details of the mutation S5L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b5S5LtCatTa1130811323All0.002163
ORF7b5S5LtCAtTG1211323All0.000002
ORF7b5S5LTCaCTa211323All0
ORF7b5S5LTCACTG111323All0
ORF7b5S5LtCatTa54945494B.1.1770.072343
ORF7b5S5LtCatTa26372639B.1.6280.929175
ORF7b5S5LTCaCTa22639B.1.6280.000705
ORF7b5S5LtCatTa537537B.1.1.70.000481
ORF7b5S5LtCatTa296297AY.40.000461
ORF7b5S5LTCACTG1297AY.40.000002
ORF7b5S5LtCatTa283283B.1.6310.952862
ORF7b5S5LtCatTa151151AY.430.000669
ORF7b5S5LtCatTa149151B.10.001365
ORF7b5S5LtCAtTG2151B.10.000018
ORF7b5S5LtCatTa127127B.1.20.001118
ORF7b5S5LtCatTa113113AY.250.00068
ORF7b5S5LtCatTa9696B.1.617.20.000361
ORF7b5S5LtCatTa8181P.10.001276
ORF7b5S5LtCatTa7373B.1.466.20.02856
ORF7b5S5LtCatTa6969AY.470.002146
ORF7b5S5LtCatTa5757AY.1030.000354
ORF7b5S5LtCatTa5656B.1.351.20.016944
ORF7b5S5LtCatTa4949AY.480.022791
ORF7b5S5LtCatTa4243B.1.10.000762
ORF7b5S5LtCAtTG143B.1.10.000018
ORF7b5S5LtCatTa4242AY.440.000256
ORF7b5S5LtCatTa4040AY.330.002671
ORF7b5S5LtCatTa3838AY.50.000785
ORF7b5S5LtCatTa3333AY.980.002607
ORF7b5S5LtCatTa3131AY.46.60.002238
ORF7b5S5LtCatTa2929B.1.1.1860.099656
ORF7b5S5LtCatTa2828AY.4.20.000607
ORF7b5S5LtCatTa2222AY.140.001936
ORF7b5S5LtCatTa2222B.1.3690.006275
ORF7b5S5LtCatTa2121AY.1020.000557
ORF7b5S5LtCatTa2121AY.720.028571
ORF7b5S5LtCatTa2020AY.530.00575
ORF7b5S5LtCatTa1919B.1.4970.00598
ORF7b5S5LtCatTa1818AY.1000.000828
ORF7b5S5LtCatTa1818AY.30.000179
ORF7b5S5LtCatTa1717AY.290.000268
ORF7b5S5LtCatTa1717AY.46.30.015873
ORF7b5S5LtCatTa1717AY.46.40.002797
ORF7b5S5LtCatTa1717AY.750.000952
ORF7b5S5LtCatTa1717P.1.70.005428
ORF7b5S5LtCatTa1616B.1.1.5190.000635
ORF7b5S5LtCatTa1515AY.98.10.000726
ORF7b5S5LtCatTa1515B.1.3110.004119
ORF7b5S5LtCatTa1515P.20.0028
ORF7b5S5LtCatTa1414AY.390.000346
ORF7b5S5LtCatTa1313AY.200.000505
ORF7b5S5LtCatTa1313AY.60.000535
ORF7b5S5LtCatTa1212AY.260.00034
ORF7b5S5LtCatTa1212AY.39.10.000475
ORF7b5S5LtCatTa1212B.1.4290.000282
ORF7b5S5LtCatTa1212P.1.20.013873
ORF7b5S5LtCatTa1010AY.1190.000353
ORF7b5S5LtCatTa1010B.1.6270.020202
ORF7b5S5LtCatTa99AY.540.000858
ORF7b5S5LtCatTa99AY.9.10.000754
ORF7b5S5LtCatTa99B.1.2210.000639
ORF7b5S5LtCatTa88AY.420.000322
ORF7b5S5LtCatTa88B.1.1.280.00249
ORF7b5S5LtCatTa88V.10.181818
ORF7b5S5LtCatTa77B.1.6370.000512
ORF7b5S5LtCatTa66A.10.001691
ORF7b5S5LtCatTa66AY.160.002278
ORF7b5S5LtCatTa66AY.460.000624
ORF7b5S5LtCatTa66B.1.2580.000399
ORF7b5S5LtCatTa66P.1.150.001394
ORF7b5S5LtCatTa55AY.230.000349
ORF7b5S5LtCatTa55AY.3.10.000426
ORF7b5S5LtCatTa55AY.610.000524
ORF7b5S5LtCatTa55AY.790.006053
ORF7b5S5LtCatTa55B.1.1.250.002843
ORF7b5S5LtCatTa55B.1.1600.000156
ORF7b5S5LtCatTa55P.1.120.00242
ORF7b5S5LtCatTa44AY.1100.000451
ORF7b5S5LtCatTa44AY.1170.000338
ORF7b5S5LtCatTa44AY.1200.000149
ORF7b5S5LtCatTa44AY.1210.000541
ORF7b5S5LtCatTa44AY.740.000463
ORF7b5S5LtCatTa44B.1.177.60.003906
ORF7b5S5LtCatTa44B.1.177.770.002905
ORF7b5S5LtCatTa34B.1.360.000438
ORF7b5S5LtCAtTG14B.1.360.000146
ORF7b5S5LtCatTa44B.1.36.170.001976
ORF7b5S5LtCatTa44B.1.3960.002823
ORF7b5S5LtCatTa44B.1.4270.000202
ORF7b5S5LtCatTa44B.1.438.10.000429
ORF7b5S5LtCatTa44B.1.5610.001588
ORF7b5S5LtCatTa33AY.1050.001929
ORF7b5S5LtCatTa33AY.120.000948
ORF7b5S5LtCatTa33AY.590.001589
ORF7b5S5LtCatTa33AY.9.20.00011
ORF7b5S5LtCatTa33B.1.2100.006397
ORF7b5S5LtCatTa33B.1.2320.001612
ORF7b5S5LtCatTa33B.1.2340.000396
ORF7b5S5LtCatTa23B.1.3510.000059
ORF7b5S5LtCAtTG13B.1.3510.00003
ORF7b5S5LtCAtTG33B.1.36.10.003421
ORF7b5S5LtCatTa33B.1.5260.000071
ORF7b5S5LtCatTa33C.370.000348
ORF7b5S5LtCatTa33P.1.140.000143
ORF7b5S5LtCatTa22AY.1090.001479
ORF7b5S5LtCatTa22AY.1130.000285
ORF7b5S5LtCatTa22AY.1160.000574
ORF7b5S5LtCatTa22AY.340.000194
ORF7b5S5LtCatTa22AY.350.000466
ORF7b5S5LtCatTa22AY.4.40.000818
ORF7b5S5LtCatTa22AY.690.000373
ORF7b5S5LtCatTa22AY.75.10.000361
ORF7b5S5LtCatTa22AY.90.000135
ORF7b5S5LtCatTa22AY.990.002099
ORF7b5S5LtCatTa22AY.99.20.000184
ORF7b5S5LtCatTa22B.1.1.3540.008772
ORF7b5S5LtCatTa22B.1.177.600.000437
ORF7b5S5LtCatTa22B.1.177.810.000379
ORF7b5S5LtCatTa22B.1.2430.000139
ORF7b5S5LtCatTa22B.1.36.290.001035
ORF7b5S5LtCatTa22B.1.4740.003802
ORF7b5S5LtCatTa22B.1.4990.002101
ORF7b5S5LtCatTa22B.1.5750.000607
ORF7b5S5LtCatTa22B.1.5960.000174
ORF7b5S5LtCatTa22B.1.617.30.00597
ORF7b5S5LtCatTa22Q.20.001227
ORF7b5S5LtCatTa110.055556
ORF7b5S5LtCatTa11A.2.50.000499
ORF7b5S5LtCatTa11A.2.5.20.001572
ORF7b5S5LtCatTa11AW.10.003049
ORF7b5S5LtCatTa11AY.100.00053
ORF7b5S5LtCatTa11AY.1110.000183
ORF7b5S5LtCatTa11AY.1140.000231
ORF7b5S5LtCatTa11AY.1150.005208
ORF7b5S5LtCatTa11AY.120.2.10.000498
ORF7b5S5LtCatTa11AY.130.000161
ORF7b5S5LtCatTa11AY.190.00114
ORF7b5S5LtCatTa11AY.270.000065
ORF7b5S5LtCatTa11AY.360.000148
ORF7b5S5LtCatTa11AY.370.000316
ORF7b5S5LtCatTa11AY.4.2.10.000149
ORF7b5S5LtCatTa11AY.4.50.000107
ORF7b5S5LtCatTa11AY.450.000122
ORF7b5S5LtCatTa11AY.46.10.001027
ORF7b5S5LtCatTa11AY.46.20.000635
ORF7b5S5LtCatTa11AY.520.000814
ORF7b5S5LtCatTa11AY.550.000917
ORF7b5S5LtCatTa11AY.560.001605
ORF7b5S5LtCatTa11AY.580.000907
ORF7b5S5LtCatTa11AY.620.000436
ORF7b5S5LtCatTa11AY.710.000475
ORF7b5S5LtCatTa11AY.80.000606
ORF7b5S5LtCatTa11AY.920.000287
ORF7b5S5LtCatTa11AY.950.000761
ORF7b5S5LtCatTa11AZ.10.000867
ORF7b5S5LtCatTa11B0.000128
ORF7b5S5LtCatTa11B.1.1.10.000327
ORF7b5S5LtCatTa11B.1.1.1010.01
ORF7b5S5LtCatTa11B.1.1.1740.003378
ORF7b5S5LtCAtTG11B.1.1.1890.001513
ORF7b5S5LtCatTa11B.1.1.2050.003717
ORF7b5S5LtCatTa11B.1.1.2070.001182
ORF7b5S5LtCAtTG11B.1.1.2820.011628
ORF7b5S5LtCatTa11B.1.1.2980.000862
ORF7b5S5LtCatTa11B.1.1.3060.000438
ORF7b5S5LtCatTa11B.1.1.3730.02381
ORF7b5S5LtCatTa11B.1.1.390.00051
ORF7b5S5LtCatTa11B.1.1.4110.014706
ORF7b5S5LtCatTa11B.1.1.4240.045455
ORF7b5S5LtCatTa11B.1.1.4640.001473
ORF7b5S5LtCatTa11B.1.1.5070.008696
ORF7b5S5LtCatTa11B.1.1.710.006061
ORF7b5S5LtCatTa11B.1.1040.00369
ORF7b5S5LtCatTa11B.1.160.110.005714
ORF7b5S5LtCatTa11B.1.160.300.002976
ORF7b5S5LtCatTa11B.1.177.120.000152
ORF7b5S5LtCatTa11B.1.177.150.000631
ORF7b5S5LtCatTa11B.1.177.170.000821
ORF7b5S5LtCatTa11B.1.177.210.000076
ORF7b5S5LtCatTa11B.1.177.300.002513
ORF7b5S5LtCatTa11B.1.177.310.011494
ORF7b5S5LtCatTa11B.1.177.40.000211
ORF7b5S5LtCatTa11B.1.177.540.000606
ORF7b5S5LtCatTa11B.1.177.630.002703
ORF7b5S5LtCatTa11B.1.177.650.000665
ORF7b5S5LtCatTa11B.1.177.70.000165
ORF7b5S5LtCatTa11B.1.177.730.000566
ORF7b5S5LtCatTa11B.1.177.860.000183
ORF7b5S5LtCatTa11B.1.2400.000216
ORF7b5S5LtCAtTG11B.1.2420.018868
ORF7b5S5LtCatTa11B.1.2470.014925
ORF7b5S5LtCatTa11B.1.3060.005714
ORF7b5S5LtCatTa11B.1.3240.001605
ORF7b5S5LtCatTa11B.1.3670.000792
ORF7b5S5LtCatTa11B.1.3990.001934
ORF7b5S5LtCatTa11B.1.4090.000781
ORF7b5S5LtCatTa11B.1.4280.00102
ORF7b5S5LtCAtTG11B.1.4380.006536
ORF7b5S5LtCatTa11B.1.4620.007246
ORF7b5S5LtCatTa11B.1.5240.001406
ORF7b5S5LtCatTa11B.1.5250.000113
ORF7b5S5LtCatTa11B.1.5300.007143
ORF7b5S5LtCatTa11B.1.5370.02
ORF7b5S5LtCatTa11B.1.5820.000491
ORF7b5S5LtCatTa11B.1.5900.004545
ORF7b5S5LtCatTa11B.1.5950.000261
ORF7b5S5LtCatTa11B.1.6120.002653
ORF7b5S5LtCatTa11B.1.617.10.000129
ORF7b5S5LtCatTa11B.1.6210.000089
ORF7b5S5LtCatTa11B.1.910.002075
ORF7b5S5LtCatTa11B.60.00091
ORF7b5S5LtCatTa11B.6.60.000889
ORF7b5S5LtCatTa11B.600.015873
ORF7b5S5LtCatTa11C.1.20.004255
ORF7b5S5LtCatTa11C.36.30.000567
ORF7b5S5LtCatTa11C.390.018868
ORF7b5S5LtCatTa11D.20.000075
ORF7b5S5LtCatTa11L.30.003546
ORF7b5S5LtCatTa11N.50.001767
ORF7b5S5LtCatTa11Q.30.000145
ORF7b5S5LtCatTa11Q.80.000165
ORF7b5S5LtCatTa11R.10.00009