CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : Mut = M1del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b1M1deldelATG---20762076127756-27758

Details of the mutation M1del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b1M1delATG---20762076All0.000397
ORF7b1M1delATG---12621262B.1.1.70.00113
ORF7b1M1delATG---239239AY.40.000372
ORF7b1M1delATG---4646AY.250.000277
ORF7b1M1delATG---3838P.10.000599
ORF7b1M1delATG---3232B.1.20.000282
ORF7b1M1delATG---2222B.1.4270.001111
ORF7b1M1delATG---2020B.1.617.20.000075
ORF7b1M1delATG---1919AY.1030.000118
ORF7b1M1delATG---1818AY.430.00008
ORF7b1M1delATG---1818B.1.10.000327
ORF7b1M1delATG---1818C.370.002089
ORF7b1M1delATG---1717AY.290.000268
ORF7b1M1delATG---1515AY.30.000149
ORF7b1M1delATG---1414AY.1110.002564
ORF7b1M1delATG---1414AY.440.000085
ORF7b1M1delATG---1414B.10.000128
ORF7b1M1delATG---1414B.1.1770.000184
ORF7b1M1delATG---1111AY.260.000311
ORF7b1M1delATG---1111AY.390.000272
ORF7b1M1delATG---1111Q.80.001814
ORF7b1M1delATG---1010B.1.1.2140.000555
ORF7b1M1delATG---1010B.1.2340.001319
ORF7b1M1delATG---99B.1.4290.000212
ORF7b1M1delATG---77AY.50.000145
ORF7b1M1delATG---77B.1.258.170.000728
ORF7b1M1delATG---66B.1.1.5190.000238
ORF7b1M1delATG---66B.1.3510.000178
ORF7b1M1delATG---55B.1.2430.000348
ORF7b1M1delATG---55B.1.5260.000118
ORF7b1M1delATG---55B.1.6210.000443
ORF7b1M1delATG---55P.1.140.000239
ORF7b1M1delATG---55P.20.000933
ORF7b1M1delATG---44AY.1140.000924
ORF7b1M1delATG---44AY.790.004843
ORF7b1M1delATG---44B.1.1.2840.00043
ORF7b1M1delATG---44B.1.351.20.00121
ORF7b1M1delATG---44P.1.150.000929
ORF7b1M1delATG---44Q.10.000505
ORF7b1M1delATG---33AY.1200.000112
ORF7b1M1delATG---33B.1.1.3180.000905
ORF7b1M1delATG---33B.1.1.4340.001046
ORF7b1M1delATG---33B.1.1.580.016129
ORF7b1M1delATG---33B.1.2580.0002
ORF7b1M1delATG---33B.1.360.000438
ORF7b1M1delATG---33B.1.5250.000339
ORF7b1M1delATG---33B.1.621.10.001517
ORF7b1M1delATG---33B.1.6260.017143
ORF7b1M1delATG---33B.1.6280.001057
ORF7b1M1delATG---33B.1.6370.000219
ORF7b1M1delATG---22AY.1080.002205
ORF7b1M1delATG---22AY.1170.000169
ORF7b1M1delATG---22AY.1190.000071
ORF7b1M1delATG---22AY.200.000078
ORF7b1M1delATG---22AY.300.000791
ORF7b1M1delATG---22AY.4.20.000043
ORF7b1M1delATG---22AY.470.000062
ORF7b1M1delATG---22AY.60.000082
ORF7b1M1delATG---22AY.940.000885
ORF7b1M1delATG---22B.1.1.10.000653
ORF7b1M1delATG---22B.1.177.500.00939
ORF7b1M1delATG---22B.1.177.600.000437
ORF7b1M1delATG---22B.1.177.70.00033
ORF7b1M1delATG---22B.1.466.20.000782
ORF7b1M1delATG---11A0.000387
ORF7b1M1delATG---11A.10.000282
ORF7b1M1delATG---11A.2.20.001689
ORF7b1M1delATG---11A.230.010526
ORF7b1M1delATG---11AE.80.000489
ORF7b1M1delATG---11AU.10.001266
ORF7b1M1delATG---11AY.1000.000046
ORF7b1M1delATG---11AY.1130.000142
ORF7b1M1delATG---11AY.1160.000287
ORF7b1M1delATG---11AY.1180.000063
ORF7b1M1delATG---11AY.120.000316
ORF7b1M1delATG---11AY.1210.000135
ORF7b1M1delATG---11AY.230.00007
ORF7b1M1delATG---11AY.240.000431
ORF7b1M1delATG---11AY.420.00004
ORF7b1M1delATG---11AY.5.40.000277
ORF7b1M1delATG---11AY.530.000288
ORF7b1M1delATG---11AY.600.000938
ORF7b1M1delATG---11AY.98.10.000048
ORF7b1M1delATG---11AZ.20.000821
ORF7b1M1delATG---11AZ.30.00152
ORF7b1M1delATG---11B0.000128
ORF7b1M1delATG---11B.1.1.1650.015385
ORF7b1M1delATG---11B.1.1.2310.003096
ORF7b1M1delATG---11B.1.1.2650.003155
ORF7b1M1delATG---11B.1.1.2800.003086
ORF7b1M1delATG---11B.1.1.330.000421
ORF7b1M1delATG---11B.1.1.3970.002252
ORF7b1M1delATG---11B.1.1.4820.023256
ORF7b1M1delATG---11B.1.110.30.000718
ORF7b1M1delATG---11B.1.1600.000031
ORF7b1M1delATG---11B.1.177.210.000076
ORF7b1M1delATG---11B.1.177.420.000894
ORF7b1M1delATG---11B.1.177.440.000519
ORF7b1M1delATG---11B.1.177.570.000281
ORF7b1M1delATG---11B.1.177.770.000726
ORF7b1M1delATG---11B.1.177.870.000728
ORF7b1M1delATG---11B.1.2210.000071
ORF7b1M1delATG---11B.1.258.110.000396
ORF7b1M1delATG---11B.1.2650.001271
ORF7b1M1delATG---11B.1.351.30.000876
ORF7b1M1delATG---11B.1.36.160.001425
ORF7b1M1delATG---11B.1.36.310.001751
ORF7b1M1delATG---11B.1.3620.001541
ORF7b1M1delATG---11B.1.3690.000285
ORF7b1M1delATG---11B.1.3750.00082
ORF7b1M1delATG---11B.1.4130.004255
ORF7b1M1delATG---11B.1.4680.005714
ORF7b1M1delATG---11B.1.5960.000087
ORF7b1M1delATG---11B.1.617.10.000129
ORF7b1M1delATG---11B.1.6300.005236
ORF7b1M1delATG---11B.120.00641
ORF7b1M1delATG---11C.300.001727
ORF7b1M1delATG---11D.20.000075
ORF7b1M1delATG---11N.50.001767
ORF7b1M1delATG---11P.1.120.000484
ORF7b1M1delATG---11P.1.160.000374
ORF7b1M1delATG---11P.1.170.000162

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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