CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : Mut = M1T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b1M1TnonsynaTgaCg3543260.92090427756-27758
ORF7b1M1TnonsynaTGaCA354270.076271227756-27758
ORF7b1M1TnonsynaTGaCT35410.0028248627756-27758

Details of the mutation M1T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b1M1TaTgaCg326354All0.000062
ORF7b1M1TaTGaCA27354All0.000005
ORF7b1M1TaTGaCT1354All0
ORF7b1M1TaTgaCg255279B.1.1.70.000228
ORF7b1M1TaTGaCA23279B.1.1.70.000021
ORF7b1M1TaTGaCT1279B.1.1.70.000001
ORF7b1M1TaTgaCg66AY.200.000233
ORF7b1M1TaTgaCg66AY.440.000037
ORF7b1M1TaTgaCg66B.10.000055
ORF7b1M1TaTgaCg44B.1.4290.000094
ORF7b1M1TaTgaCg33AY.290.000047
ORF7b1M1TaTgaCg33AY.39.10.000119
ORF7b1M1TaTgaCg33P.10.000047
ORF7b1M1TaTgaCg33P.1.160.001122
ORF7b1M1TaTgaCg22AY.1030.000012
ORF7b1M1TaTgaCg12AY.250.000006
ORF7b1M1TaTGaCA12AY.250.000006
ORF7b1M1TaTgaCg22AY.40.000003
ORF7b1M1TaTGaCA22AY.4.20.000043
ORF7b1M1TaTgaCg22AY.470.000062
ORF7b1M1TaTgaCg22B.1.20.000018
ORF7b1M1TaTgaCg22B.1.617.20.000008
ORF7b1M1TaTgaCg22N.30.011628
ORF7b1M1TaTgaCg11AY.1020.000027
ORF7b1M1TaTgaCg11AY.1190.000035
ORF7b1M1TaTgaCg11AY.140.000088
ORF7b1M1TaTgaCg11AY.260.000028
ORF7b1M1TaTgaCg11AY.360.000148
ORF7b1M1TaTgaCg11AY.430.000004
ORF7b1M1TaTgaCg11AY.840.000437
ORF7b1M1TaTgaCg11B.1.10.000018
ORF7b1M1TaTgaCg11B.1.1.2790.001121
ORF7b1M1TaTgaCg11B.1.1.2840.000107
ORF7b1M1TaTgaCg11B.1.1.370.000193
ORF7b1M1TaTgaCg11B.1.1.3860.066667
ORF7b1M1TaTgaCg11B.1.1.5230.001563
ORF7b1M1TaTgaCg11B.1.1600.000031
ORF7b1M1TaTgaCg11B.1.2210.000071
ORF7b1M1TaTgaCg11B.1.2430.00007
ORF7b1M1TaTgaCg11B.1.4160.001269
ORF7b1M1TaTgaCg11B.1.4280.00102
ORF7b1M1TaTgaCg11B.1.5260.000024
ORF7b1M1TaTgaCg11B.1.5960.000087
ORF7b1M1TaTgaCg11B.1.6210.000089
ORF7b1M1TaTGaCA11B.1.621.10.000506
ORF7b1M1TaTgaCg11B.1.6370.000073
ORF7b1M1TaTgaCg11C.37.10.002618
ORF7b1M1TaTgaCg11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.