CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : Mut = M1I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b1M1InonsynatGatT304520870.68538627756-27758
ORF7b1M1InonsynatGatA30458570.28144527756-27758
ORF7b1M1InonsynatGatC30451010.033169127756-27758

Details of the mutation M1I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b1M1IatGatT20873045All0.000399
ORF7b1M1IatGatA8573045All0.000164
ORF7b1M1IatGatC1013045All0.000019
ORF7b1M1IatGatT433711B.1.1.70.000388
ORF7b1M1IatGatA231711B.1.1.70.000207
ORF7b1M1IatGatC47711B.1.1.70.000042
ORF7b1M1IatGatT245364AY.40.000381
ORF7b1M1IatGatA116364AY.40.000181
ORF7b1M1IatGatC3364AY.40.000005
ORF7b1M1IatGatT248298B.1.617.20.000934
ORF7b1M1IatGatA50298B.1.617.20.000188
ORF7b1M1IatGatT252269B.1.5260.005923
ORF7b1M1IatGatC11269B.1.5260.000259
ORF7b1M1IatGatA6269B.1.5260.000141
ORF7b1M1IatGatT173182AY.430.000766
ORF7b1M1IatGatA7182AY.430.000031
ORF7b1M1IatGatC2182AY.430.000009
ORF7b1M1IatGatT83118AY.1030.000515
ORF7b1M1IatGatA34118AY.1030.000211
ORF7b1M1IatGatC1118AY.1030.000006
ORF7b1M1IatGatT7896P.10.001229
ORF7b1M1IatGatA1696P.10.000252
ORF7b1M1IatGatC296P.10.000032
ORF7b1M1IatGatT7374AY.980.005767
ORF7b1M1IatGatA174AY.980.000079
ORF7b1M1IatGatA3458AY.440.000207
ORF7b1M1IatGatT2458AY.440.000146
ORF7b1M1IatGatT4141B.1.36.340.87234
ORF7b1M1IatGatA2040B.1.20.000176
ORF7b1M1IatGatT1840B.1.20.000158
ORF7b1M1IatGatC240B.1.20.000018
ORF7b1M1IatGatA1934AY.250.000114
ORF7b1M1IatGatT1534AY.250.00009
ORF7b1M1IatGatT2731B.1.4270.001363
ORF7b1M1IatGatC331B.1.4270.000151
ORF7b1M1IatGatA131B.1.4270.00005
ORF7b1M1IatGatA1328B.10.000119
ORF7b1M1IatGatT1328B.10.000119
ORF7b1M1IatGatC228B.10.000018
ORF7b1M1IatGatT2025B.1.6210.00177
ORF7b1M1IatGatC325B.1.6210.000266
ORF7b1M1IatGatA225B.1.6210.000177
ORF7b1M1IatGatT2424B.1.177.350.016586
ORF7b1M1IatGatA1622AY.1020.000424
ORF7b1M1IatGatT622AY.1020.000159
ORF7b1M1IatGatA1422AY.30.000139
ORF7b1M1IatGatT822AY.30.00008
ORF7b1M1IatGatT1319B.1.1770.000171
ORF7b1M1IatGatA519B.1.1770.000066
ORF7b1M1IatGatC119B.1.1770.000013
ORF7b1M1IatGatA1018B.1.3510.000297
ORF7b1M1IatGatT718B.1.3510.000208
ORF7b1M1IatGatC118B.1.3510.00003
ORF7b1M1IatGatT1717B.1.1600.00053
ORF7b1M1IatGatT816B.1.10.000145
ORF7b1M1IatGatA816B.1.10.000145
ORF7b1M1IatGatT816B.1.5960.000697
ORF7b1M1IatGatC716B.1.5960.00061
ORF7b1M1IatGatA116B.1.5960.000087
ORF7b1M1IatGatA1315AY.460.001353
ORF7b1M1IatGatC115AY.460.000104
ORF7b1M1IatGatT115AY.460.000104
ORF7b1M1IatGatA714C.370.000812
ORF7b1M1IatGatT614C.370.000696
ORF7b1M1IatGatC114C.370.000116
ORF7b1M1IatGatT1113AY.290.000174
ORF7b1M1IatGatA213AY.290.000032
ORF7b1M1IatGatT713B.1.1.2140.000388
ORF7b1M1IatGatA613B.1.1.2140.000333
ORF7b1M1IatGatA1213D.20.0009
ORF7b1M1IatGatT113D.20.000075
ORF7b1M1IatGatA1212AY.70.002352
ORF7b1M1IatGatT912B.1.1.5190.000357
ORF7b1M1IatGatA312B.1.1.5190.000119
ORF7b1M1IatGatT1112Q.10.00139
ORF7b1M1IatGatA112Q.10.000126
ORF7b1M1IatGatT1111AY.720.014966
ORF7b1M1IatGatA611B.1.4290.000141
ORF7b1M1IatGatT411B.1.4290.000094
ORF7b1M1IatGatC111B.1.4290.000024
ORF7b1M1IatGatA1010AY.9.20.000367
ORF7b1M1IatGatT710P.1.140.000335
ORF7b1M1IatGatA310P.1.140.000143
ORF7b1M1IatGatA79AY.1170.000592
ORF7b1M1IatGatT29AY.1170.000169
ORF7b1M1IatGatA99P.1.40.008789
ORF7b1M1IatGatA58AY.9.10.000419
ORF7b1M1IatGatT38AY.9.10.000251
ORF7b1M1IatGatT68P.20.00112
ORF7b1M1IatGatC18P.20.000187
ORF7b1M1IatGatA18P.20.000187
ORF7b1M1IatGatT47AY.50.000083
ORF7b1M1IatGatA37AY.50.000062
ORF7b1M1IatGatA67B.1.5750.00182
ORF7b1M1IatGatT17B.1.5750.000303
ORF7b1M1IatGatT46AY.1000.000184
ORF7b1M1IatGatA26AY.1000.000092
ORF7b1M1IatGatA56AY.260.000142
ORF7b1M1IatGatT16AY.260.000028
ORF7b1M1IatGatA66AY.690.00112
ORF7b1M1IatGatT46B.1.6370.000292
ORF7b1M1IatGatA26B.1.6370.000146
ORF7b1M1IatGatA55AY.1080.005513
ORF7b1M1IatGatT55AY.20.001781
ORF7b1M1IatGatA45AY.200.000155
ORF7b1M1IatGatT15AY.200.000039
ORF7b1M1IatGatT45AY.230.000279
ORF7b1M1IatGatA15AY.230.00007
ORF7b1M1IatGatT35AY.4.20.000065
ORF7b1M1IatGatA25AY.4.20.000043
ORF7b1M1IatGatT55B.1.1.3480.003981
ORF7b1M1IatGatA44A.280.010582
ORF7b1M1IatGatA34AY.1190.000106
ORF7b1M1IatGatT14AY.1190.000035
ORF7b1M1IatGatT34AY.130.000483
ORF7b1M1IatGatA14AY.130.000161
ORF7b1M1IatGatA24AY.60.000082
ORF7b1M1IatGatT24AY.60.000082
ORF7b1M1IatGatA34AY.750.000168
ORF7b1M1IatGatT14AY.750.000056
ORF7b1M1IatGatT34AY.98.10.000145
ORF7b1M1IatGatA14AY.98.10.000048
ORF7b1M1IatGatT44B.1.177.420.003578
ORF7b1M1IatGatA34B.1.2340.000396
ORF7b1M1IatGatT14B.1.2340.000132
ORF7b1M1IatGatT34B.1.5250.000339
ORF7b1M1IatGatC14B.1.5250.000113
ORF7b1M1IatGatA34B.1.5770.002062
ORF7b1M1IatGatT14B.1.5770.000687
ORF7b1M1IatGatT44C.300.006908
ORF7b1M1IatGatA330.166667
ORF7b1M1IatGatA23AY.1050.001286
ORF7b1M1IatGatT13AY.1050.000643
ORF7b1M1IatGatT33AY.1070.001398
ORF7b1M1IatGatA23AY.370.000632
ORF7b1M1IatGatC13AY.370.000316
ORF7b1M1IatGatT23AY.390.000049
ORF7b1M1IatGatA13AY.390.000025
ORF7b1M1IatGatA33AY.4.2.10.000447
ORF7b1M1IatGatT23AY.420.00008
ORF7b1M1IatGatA13AY.420.00004
ORF7b1M1IatGatT33AY.450.000365
ORF7b1M1IatGatT23B0.000256
ORF7b1M1IatGatA13B0.000128
ORF7b1M1IatGatT23B.1.1.2840.000215
ORF7b1M1IatGatA13B.1.1.2840.000107
ORF7b1M1IatGatT33B.1.1.390.001529
ORF7b1M1IatGatT13B.1.177.730.000566
ORF7b1M1IatGatA13B.1.177.730.000566
ORF7b1M1IatGatC13B.1.177.730.000566
ORF7b1M1IatGatA33B.1.177.810.000568
ORF7b1M1IatGatT33B.1.214.20.001799
ORF7b1M1IatGatC23B.1.36.290.001035
ORF7b1M1IatGatT13B.1.36.290.000517
ORF7b1M1IatGatT23B.1.4700.002809
ORF7b1M1IatGatA13B.1.4700.001404
ORF7b1M1IatGatT33B.1.5650.002431
ORF7b1M1IatGatT33B.1.6200.002838
ORF7b1M1IatGatT33C.160.003181
ORF7b1M1IatGatT33D.50.014925
ORF7b1M1IatGatT23P.1.150.000465
ORF7b1M1IatGatC13P.1.150.000232
ORF7b1M1IatGatT33P.1.70.000958
ORF7b1M1IatGatT33Q.30.000435
ORF7b1M1IatGatT23Q.80.00033
ORF7b1M1IatGatA13Q.80.000165
ORF7b1M1IatGatA22AY.1180.000125
ORF7b1M1IatGatA22AY.1200.000074
ORF7b1M1IatGatA22AY.140.000176
ORF7b1M1IatGatT12AY.270.000065
ORF7b1M1IatGatA12AY.270.000065
ORF7b1M1IatGatT12AY.39.10.00004
ORF7b1M1IatGatA12AY.39.10.00004
ORF7b1M1IatGatA12AY.46.40.000165
ORF7b1M1IatGatT12AY.46.40.000165
ORF7b1M1IatGatA12AY.540.000095
ORF7b1M1IatGatT12AY.540.000095
ORF7b1M1IatGatA22AY.590.001059
ORF7b1M1IatGatA22AY.680.000547
ORF7b1M1IatGatA22AY.740.000231
ORF7b1M1IatGatA22AY.75.10.000361
ORF7b1M1IatGatA22AY.850.000854
ORF7b1M1IatGatT22AY.940.000885
ORF7b1M1IatGatA22B.1.1.1590.009346
ORF7b1M1IatGatT22B.1.1.2220.000408
ORF7b1M1IatGatA12B.1.1.370.000193
ORF7b1M1IatGatT12B.1.1.370.000193
ORF7b1M1IatGatA22B.1.1.4200.002012
ORF7b1M1IatGatT22B.1.1390.001466
ORF7b1M1IatGatA22B.1.177.210.000153
ORF7b1M1IatGatT12B.1.177.70.000165
ORF7b1M1IatGatA12B.1.177.70.000165
ORF7b1M1IatGatT22B.1.177.750.002081
ORF7b1M1IatGatA12B.1.177.860.000183
ORF7b1M1IatGatT12B.1.177.860.000183
ORF7b1M1IatGatA22B.1.2140.007326
ORF7b1M1IatGatT22B.1.220.002635
ORF7b1M1IatGatA22B.1.2430.000139
ORF7b1M1IatGatA22B.1.2580.000133
ORF7b1M1IatGatA22B.1.3060.011429
ORF7b1M1IatGatT22B.1.3440.016393
ORF7b1M1IatGatA22B.1.360.000292
ORF7b1M1IatGatA22B.1.4590.008163
ORF7b1M1IatGatT12B.1.4990.00105
ORF7b1M1IatGatA12B.1.4990.00105
ORF7b1M1IatGatA12B.1.5170.000427
ORF7b1M1IatGatT12B.1.5170.000427
ORF7b1M1IatGatT22B.1.5880.00182
ORF7b1M1IatGatA22B.1.6280.000705
ORF7b1M1IatGatA12B.1.6290.013333
ORF7b1M1IatGatT12B.1.6290.013333
ORF7b1M1IatGatA22C.360.001821
ORF7b1M1IatGatT12P.1.170.000162
ORF7b1M1IatGatA12P.1.170.000162
ORF7b1M1IatGatT12R.10.00009
ORF7b1M1IatGatC12R.10.00009
ORF7b1M1IatGatT11AY.100.00053
ORF7b1M1IatGatA11AY.1130.000142
ORF7b1M1IatGatA11AY.120.10.000321
ORF7b1M1IatGatT11AY.1210.000135
ORF7b1M1IatGatT11AY.160.00038
ORF7b1M1IatGatA11AY.16.10.00047
ORF7b1M1IatGatA11AY.280.00189
ORF7b1M1IatGatA11AY.340.000097
ORF7b1M1IatGatT11AY.34.10.00051
ORF7b1M1IatGatC11AY.360.000148
ORF7b1M1IatGatA11AY.4.50.000107
ORF7b1M1IatGatA11AY.400.000964
ORF7b1M1IatGatT11AY.410.000294
ORF7b1M1IatGatA11AY.46.60.000072
ORF7b1M1IatGatA11AY.470.000031
ORF7b1M1IatGatA11AY.480.000465
ORF7b1M1IatGatA11AY.5.40.000277
ORF7b1M1IatGatA11AY.550.000917
ORF7b1M1IatGatT11AY.610.000105
ORF7b1M1IatGatT11AY.660.00107
ORF7b1M1IatGatA11AY.670.000464
ORF7b1M1IatGatA11AY.7.10.000113
ORF7b1M1IatGatT11AY.730.000665
ORF7b1M1IatGatT11AY.790.001211
ORF7b1M1IatGatA11AY.990.001049
ORF7b1M1IatGatA11AZ.20.000821
ORF7b1M1IatGatC11B.1.1.1700.001247
ORF7b1M1IatGatA11B.1.1.1740.003378
ORF7b1M1IatGatA11B.1.1.2050.003717
ORF7b1M1IatGatT11B.1.1.2160.00089
ORF7b1M1IatGatA11B.1.1.2400.004695
ORF7b1M1IatGatT11B.1.1.280.000311
ORF7b1M1IatGatT11B.1.1.2800.003086
ORF7b1M1IatGatT11B.1.1.3040.002809
ORF7b1M1IatGatA11B.1.1.3050.003861
ORF7b1M1IatGatA11B.1.1.3180.000302
ORF7b1M1IatGatA11B.1.1.3260.001761
ORF7b1M1IatGatT11B.1.1.330.000421
ORF7b1M1IatGatC11B.1.1.3470.018182
ORF7b1M1IatGatT11B.1.1.3750.011905
ORF7b1M1IatGatT11B.1.1.610.008772
ORF7b1M1IatGatT11B.1.1.980.018519
ORF7b1M1IatGatT11B.1.1040.00369
ORF7b1M1IatGatT11B.1.1310.008772
ORF7b1M1IatGatT11B.1.160.160.000929
ORF7b1M1IatGatA11B.1.160.70.002079
ORF7b1M1IatGatT11B.1.177.120.000152
ORF7b1M1IatGatT11B.1.177.320.00135
ORF7b1M1IatGatT11B.1.177.330.001645
ORF7b1M1IatGatT11B.1.177.570.000281
ORF7b1M1IatGatT11B.1.177.820.000477
ORF7b1M1IatGatT11B.1.1890.004292
ORF7b1M1IatGatA11B.1.1950.005025
ORF7b1M1IatGatT11B.1.2210.000071
ORF7b1M1IatGatT11B.1.221.10.002907
ORF7b1M1IatGatT11B.1.2250.015385
ORF7b1M1IatGatA11B.1.258.170.000104
ORF7b1M1IatGatT11B.1.2930.0125
ORF7b1M1IatGatT11B.1.36.10.00114
ORF7b1M1IatGatT11B.1.36.170.000494
ORF7b1M1IatGatT11B.1.3670.000792
ORF7b1M1IatGatT11B.1.3690.000285
ORF7b1M1IatGatT11B.1.3990.001934
ORF7b1M1IatGatT11B.1.400.019608
ORF7b1M1IatGatA11B.1.4080.00369
ORF7b1M1IatGatT11B.1.438.10.000107
ORF7b1M1IatGatT11B.1.4480.002625
ORF7b1M1IatGatT11B.1.4560.003268
ORF7b1M1IatGatC11B.1.4690.00361
ORF7b1M1IatGatT11B.1.4970.000315
ORF7b1M1IatGatA11B.1.5090.000866
ORF7b1M1IatGatT11B.1.5640.000426
ORF7b1M1IatGatT11B.1.5950.000261
ORF7b1M1IatGatA11B.1.617.30.002985
ORF7b1M1IatGatT11B.1.621.10.000506
ORF7b1M1IatGatT11B.270.015385
ORF7b1M1IatGatT11C.36.30.000567
ORF7b1M1IatGatC11C.390.018868
ORF7b1M1IatGatA11N.30.005814
ORF7b1M1IatGatT11P.1.120.000484
ORF7b1M1IatGatA11P.1.60.001946
ORF7b1M1IatGatA11P.1.80.004785

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.