CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : Mut = L25del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b25L25deldelCTT---268268127828-27830

Details of the mutation L25del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b25L25delCTT---268268All0.000051
ORF7b25L25delCTT---5656AY.40.000087
ORF7b25L25delCTT---4444B.1.2430.003062
ORF7b25L25delCTT---3535AY.290.000552
ORF7b25L25delCTT---3232B.1.1.70.000029
ORF7b25L25delCTT---1010P.1.160.003741
ORF7b25L25delCTT---99AY.1190.000318
ORF7b25L25delCTT---77AY.1030.000043
ORF7b25L25delCTT---77B.1.1.2650.022082
ORF7b25L25delCTT---44B.1.10.000073
ORF7b25L25delCTT---44B.1.1.2140.000222
ORF7b25L25delCTT---44B.1.20.000035
ORF7b25L25delCTT---33AY.1180.000188
ORF7b25L25delCTT---33AY.250.000018
ORF7b25L25delCTT---33AY.430.000013
ORF7b25L25delCTT---33B.1.360.000438
ORF7b25L25delCTT---220.111111
ORF7b25L25delCTT---22AY.200.000078
ORF7b25L25delCTT---22AY.300.000791
ORF7b25L25delCTT---22AY.480.00093
ORF7b25L25delCTT---22AZ.20.001642
ORF7b25L25delCTT---22B.10.000018
ORF7b25L25delCTT---22B.1.177.120.000303
ORF7b25L25delCTT---22P.1.10.000635
ORF7b25L25delCTT---22P.1.140.000096
ORF7b25L25delCTT---11A.10.000282
ORF7b25L25delCTT---11A.23.10.000704
ORF7b25L25delCTT---11AY.1020.000027
ORF7b25L25delCTT---11AY.260.000028
ORF7b25L25delCTT---11AY.29.10.000221
ORF7b25L25delCTT---11AY.39.10.00004
ORF7b25L25delCTT---11AY.4.20.000022
ORF7b25L25delCTT---11AY.440.000006
ORF7b25L25delCTT---11AY.580.000907
ORF7b25L25delCTT---11AY.9.10.000084
ORF7b25L25delCTT---11AY.98.10.000048
ORF7b25L25delCTT---11B.1.1.3180.000302
ORF7b25L25delCTT---11B.1.1.440.00241
ORF7b25L25delCTT---11B.1.1770.000013
ORF7b25L25delCTT---11B.1.2340.000132
ORF7b25L25delCTT---11B.1.258.140.00098
ORF7b25L25delCTT---11B.1.3670.000792
ORF7b25L25delCTT---11B.1.4290.000024
ORF7b25L25delCTT---11B.1.4680.005714
ORF7b25L25delCTT---11B.1.5820.000491
ORF7b25L25delCTT---11B.1.617.20.000004
ORF7b25L25delCTT---11B.1.6300.005236
ORF7b25L25delCTT---11C.370.000116
ORF7b25L25delCTT---11P.10.000016
ORF7b25L25delCTT---11P.1.100.000269
ORF7b25L25delCTT---11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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