CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : Mut = L25L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b25L25LsynctTctC98700.71428627828-27830
ORF7b25L25LsynCtTTtA9890.091836727828-27830
ORF7b25L25LsynCtTTtG9880.081632727828-27830
ORF7b25L25LsynctTctG9870.071428627828-27830
ORF7b25L25LsynctTctA9840.040816327828-27830

Details of the mutation L25L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b25L25LctTctC7098All0.000013
ORF7b25L25LCtTTtA998All0.000002
ORF7b25L25LCtTTtG898All0.000002
ORF7b25L25LctTctG798All0.000001
ORF7b25L25LctTctA498All0.000001
ORF7b25L25LctTctC1323B.10.000119
ORF7b25L25LCtTTtG323B.10.000027
ORF7b25L25LctTctG323B.10.000027
ORF7b25L25LCtTTtA223B.10.000018
ORF7b25L25LctTctA223B.10.000018
ORF7b25L25LctTctC1111AY.340.001067
ORF7b25L25LctTctC99AY.1030.000056
ORF7b25L25LctTctC66B.1.1.280.001867
ORF7b25L25LCtTTtG25B.1.10.000036
ORF7b25L25LctTctC15B.1.10.000018
ORF7b25L25LctTctG15B.1.10.000018
ORF7b25L25LCtTTtA15B.1.10.000018
ORF7b25L25LctTctC44B.1.177.80.00301
ORF7b25L25LctTctA13B.1.1.4090.002833
ORF7b25L25LctTctC13B.1.1.4090.002833
ORF7b25L25LCtTTtA13B.1.1.4090.002833
ORF7b25L25LctTctC13B.1.177.730.000566
ORF7b25L25LctTctG13B.1.177.730.000566
ORF7b25L25LCtTTtG13B.1.177.730.000566
ORF7b25L25LctTctC33B.1.617.20.000011
ORF7b25L25LctTctA13B.1.6270.00202
ORF7b25L25LctTctC13B.1.6270.00202
ORF7b25L25LCtTTtA13B.1.6270.00202
ORF7b25L25LCtTTtG13P.1.10.000318
ORF7b25L25LctTctC13P.1.10.000318
ORF7b25L25LctTctG13P.1.10.000318
ORF7b25L25LctTctG120.055556
ORF7b25L25LCtTTtG120.055556
ORF7b25L25LCtTTtA22AY.1020.000053
ORF7b25L25LctTctC22AY.250.000012
ORF7b25L25LCtTTtA22AY.30.00002
ORF7b25L25LctTctC22AY.610.00021
ORF7b25L25LctTctC11AY.1110.000183
ORF7b25L25LctTctC11AY.1170.000085
ORF7b25L25LctTctC11AY.160.00038
ORF7b25L25LctTctC11AY.16.10.00047
ORF7b25L25LctTctC11AY.40.000002
ORF7b25L25LctTctC11AY.520.000814
ORF7b25L25LctTctC11AY.920.000287
ORF7b25L25LctTctC11B.1.1.100.001115
ORF7b25L25LctTctC11B.1.1.3180.000302
ORF7b25L25LctTctC11B.1.1.4320.001266
ORF7b25L25LctTctC11B.1.1.70.000001
ORF7b25L25LctTctC11B.1.1390.000733
ORF7b25L25LctTctC11B.1.2210.000071
ORF7b25L25LctTctC11B.1.2580.000067
ORF7b25L25LctTctC11B.1.5260.000024

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.