CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : Mut = L18V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b18L18VnonsynCtaGta1191160.9747927807-27809
ORF7b18L18VnonsynCtAGtT11930.025210127807-27809

Details of the mutation L18V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b18L18VCtaGta116119All0.000022
ORF7b18L18VCtAGtT3119All0.000001
ORF7b18L18VCtaGta8787B.1.5820.042689
ORF7b18L18VCtaGta1414C.370.001625
ORF7b18L18VCtaGta33AY.440.000018
ORF7b18L18VCtaGta33B.10.000027
ORF7b18L18VCtAGtT220.111111
ORF7b18L18VCtaGta12B.1.2210.000071
ORF7b18L18VCtAGtT12B.1.2210.000071
ORF7b18L18VCtaGta22B.1.6120.005305
ORF7b18L18VCtaGta11AY.1160.000287
ORF7b18L18VCtaGta11AY.620.000436
ORF7b18L18VCtaGta11B.1.1.3850.004464
ORF7b18L18VCtaGta11B.1.1.5280.004808
ORF7b18L18VCtaGta11B.1.3360.002439
ORF7b18L18VCtaGta11B.1.5960.000087

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.