CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : Mut = L18P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b18L18PnonsyncTacCa1691630.96449727807-27809
ORF7b18L18PnonsyncTAcCT16950.029585827807-27809
ORF7b18L18PnonsyncTAcCC16910.0059171627807-27809

Details of the mutation L18P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b18L18PcTacCa163169All0.000031
ORF7b18L18PcTAcCT5169All0.000001
ORF7b18L18PcTAcCC1169All0
ORF7b18L18PcTacCa7070B.1.1.70.000063
ORF7b18L18PcTacCa1313AY.1030.000081
ORF7b18L18PcTacCa1111B.1.6370.000804
ORF7b18L18PcTacCa1010C.50.909091
ORF7b18L18PcTacCa490.222222
ORF7b18L18PcTAcCT490.222222
ORF7b18L18PcTAcCC190.055556
ORF7b18L18PcTacCa66B.1.20.000053
ORF7b18L18PcTacCa44AY.440.000024
ORF7b18L18PcTacCa33B.10.000027
ORF7b18L18PcTacCa33B.1.1.1760.001318
ORF7b18L18PcTacCa33B.1.1770.00004
ORF7b18L18PcTacCa33B.400.001093
ORF7b18L18PcTacCa22AY.40.000003
ORF7b18L18PcTacCa22AY.430.000009
ORF7b18L18PcTacCa12B.1.2210.000071
ORF7b18L18PcTAcCT12B.1.2210.000071
ORF7b18L18PcTacCa22B.1.621.10.001012
ORF7b18L18PcTacCa22N.50.003534
ORF7b18L18PcTacCa22Q.30.00029
ORF7b18L18PcTacCa11A.30.002096
ORF7b18L18PcTacCa11AY.1200.000037
ORF7b18L18PcTacCa11AY.200.000039
ORF7b18L18PcTacCa11AY.250.000006
ORF7b18L18PcTacCa11AY.270.000065
ORF7b18L18PcTacCa11AY.30.00001
ORF7b18L18PcTacCa11AY.390.000025
ORF7b18L18PcTacCa11AY.4.20.000022
ORF7b18L18PcTacCa11AY.470.000031
ORF7b18L18PcTacCa11B.1.1.10.000327
ORF7b18L18PcTacCa11B.1.1.3850.004464
ORF7b18L18PcTacCa11B.1.1.4860.001577
ORF7b18L18PcTacCa11B.1.1420.002899
ORF7b18L18PcTacCa11B.1.2580.000067
ORF7b18L18PcTacCa11B.1.258.170.000104
ORF7b18L18PcTacCa11B.1.4170.028571
ORF7b18L18PcTacCa11B.1.617.10.000129
ORF7b18L18PcTacCa11B.1.617.20.000004
ORF7b18L18PcTacCa11C.370.000116
ORF7b18L18PcTacCa11D.20.000075
ORF7b18L18PcTacCa11P.10.000016
ORF7b18L18PcTacCa11P.1.120.000484

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.