CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : Mut = L17L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b17L17LsynCtgTtg634153210.83914227804-27806
ORF7b17L17LsynctGctT63417980.12584827804-27806
ORF7b17L17LsynctGctA63412190.034537127804-27806
ORF7b17L17LsynctGctC634130.00047311127804-27806

Details of the mutation L17L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b17L17LCtgTtg53216341All0.001018
ORF7b17L17LctGctT7986341All0.000153
ORF7b17L17LctGctA2196341All0.000042
ORF7b17L17LctGctC36341All0.000001
ORF7b17L17LCtgTtg11841340B.1.1.70.00106
ORF7b17L17LctGctT1521340B.1.1.70.000136
ORF7b17L17LctGctA31340B.1.1.70.000003
ORF7b17L17LctGctC11340B.1.1.70.000001
ORF7b17L17LCtgTtg10231023B.1.3670.810618
ORF7b17L17LCtgTtg427435B.1.20.00376
ORF7b17L17LctGctT7435B.1.20.000062
ORF7b17L17LctGctC1435B.1.20.000009
ORF7b17L17LCtgTtg333336B.1.5260.007827
ORF7b17L17LctGctT3336B.1.5260.000071
ORF7b17L17LCtgTtg164305B.10.001502
ORF7b17L17LctGctA115305B.10.001053
ORF7b17L17LctGctT26305B.10.000238
ORF7b17L17LCtgTtg146213AY.40.000227
ORF7b17L17LctGctT66213AY.40.000103
ORF7b17L17LctGctA1213AY.40.000002
ORF7b17L17LCtgTtg191195AY.250.001149
ORF7b17L17LctGctT4195AY.250.000024
ORF7b17L17LCtgTtg81188B.1.10.001469
ORF7b17L17LctGctT60188B.1.10.001088
ORF7b17L17LctGctA47188B.1.10.000853
ORF7b17L17LCtgTtg151151B.1.5970.699074
ORF7b17L17LCtgTtg137137P.20.025569
ORF7b17L17LctGctT9999B.1.36.120.951923
ORF7b17L17LCtgTtg6797B.1.1770.000882
ORF7b17L17LctGctT3097B.1.1770.000395
ORF7b17L17LCtgTtg5896P.10.000914
ORF7b17L17LctGctT3896P.10.000599
ORF7b17L17LCtgTtg9393C.110.989362
ORF7b17L17LCtgTtg8183B.1.2580.00539
ORF7b17L17LctGctT283B.1.2580.000133
ORF7b17L17LCtgTtg6679B.1.617.20.000249
ORF7b17L17LctGctT1379B.1.617.20.000049
ORF7b17L17LCtgTtg7474AY.240.031897
ORF7b17L17LctGctT2464B.1.1.5190.000953
ORF7b17L17LctGctA2364B.1.1.5190.000913
ORF7b17L17LCtgTtg1764B.1.1.5190.000675
ORF7b17L17LCtgTtg4155AY.440.00025
ORF7b17L17LctGctT1455AY.440.000085
ORF7b17L17LCtgTtg5555B.1.36.90.176849
ORF7b17L17LCtgTtg4141AY.130.0066
ORF7b17L17LCtgTtg2030AY.1030.000124
ORF7b17L17LctGctT730AY.1030.000043
ORF7b17L17LctGctA330AY.1030.000019
ORF7b17L17LCtgTtg2828AY.7.20.01566
ORF7b17L17LCtgTtg2728B.1.360.003939
ORF7b17L17LctGctT128B.1.360.000146
ORF7b17L17LCtgTtg2728B.1.6210.00239
ORF7b17L17LctGctT128B.1.6210.000089
ORF7b17L17LCtgTtg2727AY.470.00084
ORF7b17L17LCtgTtg2225AY.30.000219
ORF7b17L17LctGctT325AY.30.00003
ORF7b17L17LCtgTtg2425C.370.002786
ORF7b17L17LctGctT125C.370.000116
ORF7b17L17LCtgTtg1823B.1.1600.000561
ORF7b17L17LctGctT523B.1.1600.000156
ORF7b17L17LCtgTtg2323B.1.36.180.009664
ORF7b17L17LCtgTtg1123B.1.4270.000555
ORF7b17L17LctGctA723B.1.4270.000353
ORF7b17L17LctGctT523B.1.4270.000252
ORF7b17L17LctGctT2021A.2.40.06734
ORF7b17L17LCtgTtg121A.2.40.003367
ORF7b17L17LCtgTtg1420B.1.1.280.004357
ORF7b17L17LctGctT620B.1.1.280.001867
ORF7b17L17LCtgTtg1519B.1.1.2220.00306
ORF7b17L17LctGctT419B.1.1.2220.000816
ORF7b17L17LCtgTtg1018AY.430.000044
ORF7b17L17LctGctT818AY.430.000035
ORF7b17L17LCtgTtg1718B.1.1.2140.000943
ORF7b17L17LctGctT118B.1.1.2140.000055
ORF7b17L17LCtgTtg1818B.1.177.360.290323
ORF7b17L17LCtgTtg1718B.1.5170.007259
ORF7b17L17LctGctT118B.1.5170.000427
ORF7b17L17LCtgTtg1517B.1.2210.001065
ORF7b17L17LctGctT217B.1.2210.000142
ORF7b17L17LCtgTtg1717B.1.5960.001481
ORF7b17L17LCtgTtg1517B.1.617.10.001934
ORF7b17L17LctGctT217B.1.617.10.000258
ORF7b17L17LctGctT1616A.2.5.10.076923
ORF7b17L17LCtgTtg1416B.1.3510.000416
ORF7b17L17LctGctT216B.1.3510.000059
ORF7b17L17LCtgTtg1515P.1.140.000717
ORF7b17L17LctGctT7140.388889
ORF7b17L17LCtgTtg5140.277778
ORF7b17L17LctGctA2140.111111
ORF7b17L17LCtgTtg1014AY.290.000158
ORF7b17L17LctGctT414AY.290.000063
ORF7b17L17LCtgTtg1214B.1.2430.000835
ORF7b17L17LctGctT114B.1.2430.00007
ORF7b17L17LctGctA114B.1.2430.00007
ORF7b17L17LctGctT1313B.180.565217
ORF7b17L17LctGctT1212A.180.6
ORF7b17L17LCtgTtg1212B.1.110.30.008621
ORF7b17L17LCtgTtg1212B.1.6380.631579
ORF7b17L17LCtgTtg811B.1.1.330.003367
ORF7b17L17LctGctT311B.1.1.330.001263
ORF7b17L17LCtgTtg1111B.1.36.290.005691
ORF7b17L17LctGctT1011B.1.4690.036101
ORF7b17L17LCtgTtg111B.1.4690.00361
ORF7b17L17LCtgTtg1010AY.1200.000372
ORF7b17L17LctGctT510AY.260.000142
ORF7b17L17LCtgTtg510AY.260.000142
ORF7b17L17LCtgTtg1010AY.560.016051
ORF7b17L17LCtgTtg710AY.610.000733
ORF7b17L17LctGctT310AY.610.000314
ORF7b17L17LCtgTtg1010B.1.1.1860.034364
ORF7b17L17LctGctT99AY.1180.000564
ORF7b17L17LctGctT99AY.940.003984
ORF7b17L17LCtgTtg99B.400.003279
ORF7b17L17LCtgTtg88AY.1000.000368
ORF7b17L17LCtgTtg88AY.620.003486
ORF7b17L17LCtgTtg88N.60.056738
ORF7b17L17LCtgTtg88W.40.010811
ORF7b17L17LctGctT57B.1.1.250.002843
ORF7b17L17LCtgTtg27B.1.1.250.001137
ORF7b17L17LCtgTtg77B.1.2320.003761
ORF7b17L17LctGctT46AY.50.000083
ORF7b17L17LCtgTtg26AY.50.000041
ORF7b17L17LCtgTtg66AY.630.002321
ORF7b17L17LCtgTtg56B0.000639
ORF7b17L17LctGctA16B0.000128
ORF7b17L17LCtgTtg56B.1.1.2180.038462
ORF7b17L17LctGctT16B.1.1.2180.007692
ORF7b17L17LCtgTtg66B.1.1.4280.056604
ORF7b17L17LCtgTtg56B.1.2340.00066
ORF7b17L17LctGctT16B.1.2340.000132
ORF7b17L17LCtgTtg66B.1.438.10.000644
ORF7b17L17LctGctT55A0.001935
ORF7b17L17LCtgTtg45AY.1020.000106
ORF7b17L17LctGctT15AY.1020.000027
ORF7b17L17LCtgTtg35AY.1190.000106
ORF7b17L17LctGctT25AY.1190.000071
ORF7b17L17LCtgTtg45AY.270.000259
ORF7b17L17LctGctT15AY.270.000065
ORF7b17L17LCtgTtg55AY.39.10.000198
ORF7b17L17LctGctT35B.1.1.2160.002671
ORF7b17L17LCtgTtg25B.1.1.2160.001781
ORF7b17L17LCtgTtg35B.1.1.630.001157
ORF7b17L17LctGctT25B.1.1.630.000772
ORF7b17L17LctGctA55B.1.1.980.092593
ORF7b17L17LctGctT35B.1.177.40.000633
ORF7b17L17LCtgTtg25B.1.177.40.000422
ORF7b17L17LCtgTtg55B.1.258.170.00052
ORF7b17L17LCtgTtg55B.1.4290.000118
ORF7b17L17LCtgTtg55D.20.000375
ORF7b17L17LctGctT35P.1.100.000808
ORF7b17L17LCtgTtg25P.1.100.000539
ORF7b17L17LCtgTtg44AY.46.40.000658
ORF7b17L17LCtgTtg24AY.60.000082
ORF7b17L17LctGctT24AY.60.000082
ORF7b17L17LCtgTtg44AY.670.001857
ORF7b17L17LCtgTtg44AY.98.10.000194
ORF7b17L17LCtgTtg24B.1.1.2940.002532
ORF7b17L17LctGctT24B.1.1.2940.002532
ORF7b17L17LctGctT24B.1.1.3060.000877
ORF7b17L17LCtgTtg24B.1.1.3060.000877
ORF7b17L17LCtgTtg44B.1.1.3170.001647
ORF7b17L17LctGctT24B.1.1.3180.000604
ORF7b17L17LCtgTtg24B.1.1.3180.000604
ORF7b17L17LCtgTtg44B.1.1.3480.003185
ORF7b17L17LCtgTtg24B.1.1.4340.000697
ORF7b17L17LctGctT24B.1.1.4340.000697
ORF7b17L17LCtgTtg44B.1.1.5230.00625
ORF7b17L17LCtgTtg44B.1.1460.016949
ORF7b17L17LCtgTtg44B.1.177.210.000306
ORF7b17L17LCtgTtg44B.1.177.520.00703
ORF7b17L17LCtgTtg44B.1.466.20.001565
ORF7b17L17LCtgTtg23AE.80.000978
ORF7b17L17LctGctT13AE.80.000489
ORF7b17L17LCtgTtg33AY.340.000291
ORF7b17L17LCtgTtg33AY.4.20.000065
ORF7b17L17LCtgTtg23AY.75.10.000361
ORF7b17L17LctGctT13AY.75.10.00018
ORF7b17L17LCtgTtg33AY.850.001282
ORF7b17L17LCtgTtg33AY.9.20.00011
ORF7b17L17LctGctT33B.1.1.270.016949
ORF7b17L17LCtgTtg33B.1.1390.002199
ORF7b17L17LCtgTtg33B.1.177.580.003995
ORF7b17L17LCtgTtg33B.1.177.80.002257
ORF7b17L17LCtgTtg33B.1.177.810.000568
ORF7b17L17LctGctA33B.1.177.820.001432
ORF7b17L17LCtgTtg33B.1.177.830.004444
ORF7b17L17LCtgTtg23B.1.3110.000549
ORF7b17L17LctGctT13B.1.3110.000275
ORF7b17L17LCtgTtg33B.1.3490.002144
ORF7b17L17LCtgTtg33B.1.36.310.005254
ORF7b17L17LctGctT23B.1.3690.00057
ORF7b17L17LCtgTtg13B.1.3690.000285
ORF7b17L17LCtgTtg33B.1.4700.004213
ORF7b17L17LCtgTtg33B.1.5090.002597
ORF7b17L17LctGctA23B.1.6090.000959
ORF7b17L17LctGctT13B.1.6090.000479
ORF7b17L17LctGctA33B.1.6360.020134
ORF7b17L17LCtgTtg33C.160.003181
ORF7b17L17LctGctT23P.1.130.001797
ORF7b17L17LCtgTtg13P.1.130.000898
ORF7b17L17LCtgTtg23Q.30.00029
ORF7b17L17LctGctT13Q.30.000145
ORF7b17L17LCtgTtg33Q.70.003333
ORF7b17L17LctGctA12A.10.000282
ORF7b17L17LCtgTtg12A.10.000282
ORF7b17L17LCtgTtg22A.2.50.000998
ORF7b17L17LCtgTtg22A.290.010638
ORF7b17L17LCtgTtg22A.30.004193
ORF7b17L17LctGctT12AY.200.000039
ORF7b17L17LCtgTtg12AY.200.000039
ORF7b17L17LCtgTtg22AY.380.000999
ORF7b17L17LctGctT22AY.4.2.10.000298
ORF7b17L17LctGctT22AY.4.40.000818
ORF7b17L17LCtgTtg22AY.99.20.000184
ORF7b17L17LCtgTtg22B.1.1.10.000653
ORF7b17L17LCtgTtg22B.1.1.1530.002191
ORF7b17L17LCtgTtg22B.1.1.2040.006079
ORF7b17L17LctGctT22B.1.1.3220.017544
ORF7b17L17LctGctT22B.1.1.3370.007194
ORF7b17L17LctGctT12B.1.1.3850.004464
ORF7b17L17LCtgTtg12B.1.1.3850.004464
ORF7b17L17LCtgTtg22B.1.1.390.001019
ORF7b17L17LctGctT12B.1.1.4130.006897
ORF7b17L17LCtgTtg12B.1.1.4130.006897
ORF7b17L17LCtgTtg22B.1.1.4170.005405
ORF7b17L17LCtgTtg12B.1.1280.000635
ORF7b17L17LctGctT12B.1.1280.000635
ORF7b17L17LCtgTtg22B.1.160.260.004843
ORF7b17L17LCtgTtg22B.1.177.100.001756
ORF7b17L17LCtgTtg22B.1.177.320.002699
ORF7b17L17LCtgTtg12B.1.177.60.000977
ORF7b17L17LctGctT12B.1.177.60.000977
ORF7b17L17LctGctT22B.1.177.70.00033
ORF7b17L17LCtgTtg22B.1.2790.001027
ORF7b17L17LCtgTtg22B.1.36.10.002281
ORF7b17L17LCtgTtg22B.1.36.220.002415
ORF7b17L17LCtgTtg22B.1.36.80.002
ORF7b17L17LCtgTtg22B.1.3660.009756
ORF7b17L17LCtgTtg22B.1.3890.002004
ORF7b17L17LCtgTtg22B.1.5250.000226
ORF7b17L17LctGctT12B.1.5880.00091
ORF7b17L17LCtgTtg12B.1.5880.00091
ORF7b17L17LCtgTtg22B.1.6200.001892
ORF7b17L17LCtgTtg22B.1.6370.000146
ORF7b17L17LCtgTtg22C.40.02
ORF7b17L17LCtgTtg22P.1.70.000639
ORF7b17L17LCtgTtg22Q.40.00091
ORF7b17L17LCtgTtg22Q.80.00033
ORF7b17L17LctGctT11A.190.009434
ORF7b17L17LctGctT11A.210.00277
ORF7b17L17LCtgTtg11AM.40.003571
ORF7b17L17LCtgTtg11AU.10.001266
ORF7b17L17LctGctT11AU.20.002421
ORF7b17L17LCtgTtg11AY.10.000396
ORF7b17L17LCtgTtg11AY.100.00053
ORF7b17L17LCtgTtg11AY.116.10.000311
ORF7b17L17LCtgTtg11AY.1210.000135
ORF7b17L17LCtgTtg11AY.140.000088
ORF7b17L17LCtgTtg11AY.160.00038
ORF7b17L17LCtgTtg11AY.16.10.00047
ORF7b17L17LCtgTtg11AY.20.000356
ORF7b17L17LCtgTtg11AY.230.00007
ORF7b17L17LCtgTtg11AY.3.10.000085
ORF7b17L17LCtgTtg11AY.300.000396
ORF7b17L17LCtgTtg11AY.330.000067
ORF7b17L17LCtgTtg11AY.360.000148
ORF7b17L17LCtgTtg11AY.390.000025
ORF7b17L17LCtgTtg11AY.39.20.001541
ORF7b17L17LctGctC11AY.4.50.000107
ORF7b17L17LCtgTtg11AY.450.000122
ORF7b17L17LCtgTtg11AY.5.40.000277
ORF7b17L17LCtgTtg11AY.640.000595
ORF7b17L17LctGctT11AY.710.000475
ORF7b17L17LCtgTtg11AY.740.000116
ORF7b17L17LCtgTtg11AY.750.000056
ORF7b17L17LctGctT11AY.770.001127
ORF7b17L17LCtgTtg11AY.840.000437
ORF7b17L17LCtgTtg11AY.9.10.000084
ORF7b17L17LCtgTtg11AY.900.000684
ORF7b17L17LCtgTtg11AY.990.001049
ORF7b17L17LCtgTtg11AZ.10.000867
ORF7b17L17LCtgTtg11B.1.1.1180.010204
ORF7b17L17LCtgTtg11B.1.1.120.007463
ORF7b17L17LctGctA11B.1.1.1610.003534
ORF7b17L17LctGctT11B.1.1.1700.001247
ORF7b17L17LCtgTtg11B.1.1.1740.003378
ORF7b17L17LCtgTtg11B.1.1.1760.000439
ORF7b17L17LCtgTtg11B.1.1.1980.001468
ORF7b17L17LctGctT11B.1.1.2010.02439
ORF7b17L17LCtgTtg11B.1.1.2260.005814
ORF7b17L17LCtgTtg11B.1.1.2280.003049
ORF7b17L17LCtgTtg11B.1.1.2720.005208
ORF7b17L17LctGctT11B.1.1.2730.006757
ORF7b17L17LCtgTtg11B.1.1.2770.000759
ORF7b17L17LctGctT11B.1.1.2820.011628
ORF7b17L17LCtgTtg11B.1.1.2840.000107
ORF7b17L17LCtgTtg11B.1.1.2890.002083
ORF7b17L17LCtgTtg11B.1.1.3010.001179
ORF7b17L17LCtgTtg11B.1.1.3040.002809
ORF7b17L17LCtgTtg11B.1.1.3160.000925
ORF7b17L17LCtgTtg11B.1.1.3540.004386
ORF7b17L17LctGctT11B.1.1.3690.000446
ORF7b17L17LCtgTtg11B.1.1.3970.002252
ORF7b17L17LctGctT11B.1.1.3980.003226
ORF7b17L17LCtgTtg11B.1.1.4200.001006
ORF7b17L17LCtgTtg11B.1.1.440.00241
ORF7b17L17LCtgTtg11B.1.1.460.004367
ORF7b17L17LctGctA11B.1.1.4640.001473
ORF7b17L17LCtgTtg11B.1.1.4860.001577
ORF7b17L17LctGctT11B.1.1.500.000679
ORF7b17L17LCtgTtg11B.1.1.5170.006803
ORF7b17L17LctGctT11B.1.1.5260.003546
ORF7b17L17LCtgTtg11B.1.1.700.000341
ORF7b17L17LctGctT11B.1.1.710.006061
ORF7b17L17LCtgTtg11B.1.1110.001175
ORF7b17L17LCtgTtg11B.1.1470.000756
ORF7b17L17LCtgTtg11B.1.1570.002985
ORF7b17L17LCtgTtg11B.1.160.160.000929
ORF7b17L17LCtgTtg11B.1.160.270.015152
ORF7b17L17LCtgTtg11B.1.1690.014925
ORF7b17L17LCtgTtg11B.1.177.120.000152
ORF7b17L17LCtgTtg11B.1.177.160.000664
ORF7b17L17LctGctT11B.1.177.170.000821
ORF7b17L17LCtgTtg11B.1.177.560.000668
ORF7b17L17LCtgTtg11B.1.177.620.001192
ORF7b17L17LCtgTtg11B.1.177.650.000665
ORF7b17L17LCtgTtg11B.1.177.690.001484
ORF7b17L17LCtgTtg11B.1.177.860.000183
ORF7b17L17LCtgTtg11B.1.177.870.000728
ORF7b17L17LCtgTtg11B.1.220.001318
ORF7b17L17LCtgTtg11B.1.2220.001692
ORF7b17L17LctGctT11B.1.2250.015385
ORF7b17L17LCtgTtg11B.1.2980.002114
ORF7b17L17LctGctT11B.1.3130.006579
ORF7b17L17LctGctT11B.1.3190.003049
ORF7b17L17LctGctT11B.1.3200.001245
ORF7b17L17LctGctT11B.1.3240.001605
ORF7b17L17LCtgTtg11B.1.3560.001727
ORF7b17L17LCtgTtg11B.1.36.20.010753
ORF7b17L17LCtgTtg11B.1.36.380.001642
ORF7b17L17LCtgTtg11B.1.3610.001289
ORF7b17L17LCtgTtg11B.1.3910.001127
ORF7b17L17LCtgTtg11B.1.3970.004854
ORF7b17L17LCtgTtg11B.1.3990.001934
ORF7b17L17LctGctT11B.1.4040.001302
ORF7b17L17LCtgTtg11B.1.4170.028571
ORF7b17L17LCtgTtg11B.1.4220.000812
ORF7b17L17LctGctT11B.1.4280.00102
ORF7b17L17LCtgTtg11B.1.4330.003195
ORF7b17L17LctGctT11B.1.4450.011765
ORF7b17L17LctGctT11B.1.4620.007246
ORF7b17L17LCtgTtg11B.1.5030.002488
ORF7b17L17LCtgTtg11B.1.5670.003333
ORF7b17L17LCtgTtg11B.1.575.10.002439
ORF7b17L17LCtgTtg11B.1.5790.011236
ORF7b17L17LCtgTtg11B.1.5950.000261
ORF7b17L17LCtgTtg11B.1.595.40.007299
ORF7b17L17LCtgTtg11B.1.6030.010638
ORF7b17L17LctGctT11B.1.619.10.000641
ORF7b17L17LctGctT11B.1.621.10.000506
ORF7b17L17LCtgTtg11B.1.6250.002353
ORF7b17L17LCtgTtg11B.1.6270.00202
ORF7b17L17LCtgTtg11B.1.6280.000352
ORF7b17L17LCtgTtg11B.30.000831
ORF7b17L17LctGctT11B.3.10.001658
ORF7b17L17LCtgTtg11B.350.007812
ORF7b17L17LctGctT11B.60.00091
ORF7b17L17LCtgTtg11C.350.000774
ORF7b17L17LctGctT11C.37.10.002618
ORF7b17L17LctGctT11C.80.004464
ORF7b17L17LCtgTtg11N.50.001767
ORF7b17L17LCtgTtg11P.1.120.000484
ORF7b17L17LCtgTtg11P.1.150.000232
ORF7b17L17LCtgTtg11P.1.60.001946
ORF7b17L17LCtgTtg11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.