CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 14 | L14L | syn | ttA | ttG | 900 | 662 | 0.735556 | 27795-27797 | |
ORF7b | 14 | L14L | syn | Tta | Cta | 900 | 228 | 0.253333 | 27795-27797 | |
ORF7b | 14 | L14L | syn | TtA | CtT | 900 | 9 | 0.01 | 27795-27797 | |
ORF7b | 14 | L14L | syn | TtA | CtG | 900 | 1 | 0.00111111 | 27795-27797 |
Details of the mutation L14L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 14 | L14L | ttA | ttG | 662 | 900 | All | 0.000127 |
ORF7b | 14 | L14L | Tta | Cta | 228 | 900 | All | 0.000044 |
ORF7b | 14 | L14L | TtA | CtT | 9 | 900 | All | 0.000002 |
ORF7b | 14 | L14L | TtA | CtG | 1 | 900 | All | 0 |
ORF7b | 14 | L14L | ttA | ttG | 214 | 298 | B.1.1.7 | 0.000192 |
ORF7b | 14 | L14L | Tta | Cta | 77 | 298 | B.1.1.7 | 0.000069 |
ORF7b | 14 | L14L | TtA | CtT | 7 | 298 | B.1.1.7 | 0.000006 |
ORF7b | 14 | L14L | ttA | ttG | 171 | 184 | AY.4 | 0.000266 |
ORF7b | 14 | L14L | Tta | Cta | 13 | 184 | AY.4 | 0.00002 |
ORF7b | 14 | L14L | ttA | ttG | 133 | 135 | AY.103 | 0.000826 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 135 | AY.103 | 0.000012 |
ORF7b | 14 | L14L | Tta | Cta | 45 | 50 | B.1.2 | 0.000396 |
ORF7b | 14 | L14L | ttA | ttG | 5 | 50 | B.1.2 | 0.000044 |
ORF7b | 14 | L14L | ttA | ttG | 28 | 35 | B.1.617.2 | 0.000105 |
ORF7b | 14 | L14L | Tta | Cta | 7 | 35 | B.1.617.2 | 0.000026 |
ORF7b | 14 | L14L | Tta | Cta | 13 | 22 | AY.43 | 0.000058 |
ORF7b | 14 | L14L | ttA | ttG | 9 | 22 | AY.43 | 0.00004 |
ORF7b | 14 | L14L | ttA | ttG | 14 | 17 | AY.44 | 0.000085 |
ORF7b | 14 | L14L | Tta | Cta | 3 | 17 | AY.44 | 0.000018 |
ORF7b | 14 | L14L | ttA | ttG | 9 | 14 | B.1 | 0.000082 |
ORF7b | 14 | L14L | Tta | Cta | 5 | 14 | B.1 | 0.000046 |
ORF7b | 14 | L14L | ttA | ttG | 12 | 12 | AY.9 | 0.000811 |
ORF7b | 14 | L14L | Tta | Cta | 12 | 12 | B.1.429 | 0.000282 |
ORF7b | 14 | L14L | Tta | Cta | 8 | 8 | AY.29 | 0.000126 |
ORF7b | 14 | L14L | Tta | Cta | 5 | 7 | AY.102 | 0.000133 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 7 | AY.102 | 0.000053 |
ORF7b | 14 | L14L | ttA | ttG | 6 | 6 | AY.29.1 | 0.001323 |
ORF7b | 14 | L14L | ttA | ttG | 4 | 5 | AY.25 | 0.000024 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 5 | AY.25 | 0.000006 |
ORF7b | 14 | L14L | Tta | Cta | 5 | 5 | AY.5 | 0.000103 |
ORF7b | 14 | L14L | ttA | ttG | 5 | 5 | B.1.1.70 | 0.001705 |
ORF7b | 14 | L14L | ttA | ttG | 4 | 5 | B.1.243 | 0.000278 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 5 | B.1.243 | 0.00007 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 4 | B.1.427 | 0.000101 |
ORF7b | 14 | L14L | TtA | CtT | 1 | 4 | B.1.427 | 0.00005 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 4 | B.1.427 | 0.00005 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 3 | AY.26 | 0.000057 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 3 | AY.26 | 0.000028 |
ORF7b | 14 | L14L | ttA | ttG | 3 | 3 | AY.3 | 0.00003 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 3 | AY.3.1 | 0.000171 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 3 | AY.3.1 | 0.000085 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 3 | B.1.1 | 0.000036 |
ORF7b | 14 | L14L | TtA | CtG | 1 | 3 | B.1.1 | 0.000018 |
ORF7b | 14 | L14L | ttA | ttG | 3 | 3 | B.1.214.2 | 0.001799 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 3 | B.1.351 | 0.000059 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 3 | B.1.351 | 0.00003 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 2 | A | 0.000387 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 2 | A | 0.000387 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 2 | AY.119 | 0.000071 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 2 | AY.24 | 0.000862 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 2 | AY.39.1 | 0.000079 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 2 | AY.45 | 0.000243 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 2 | AY.75 | 0.000112 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 2 | AY.98 | 0.000158 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 2 | B.1.1.284 | 0.000215 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 2 | B.1.234 | 0.000132 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 2 | B.1.234 | 0.000132 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 2 | B.1.258 | 0.000133 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 2 | B.1.561 | 0.000794 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 2 | B.1.596 | 0.000174 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 2 | B.6.6 | 0.001778 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 2 | P.1.17 | 0.000162 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 2 | P.1.17 | 0.000162 |
ORF7b | 14 | L14L | ttA | ttG | 2 | 2 | Q.1 | 0.000253 |
ORF7b | 14 | L14L | Tta | Cta | 2 | 2 | Q.8 | 0.00033 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | A.27 | 0.001656 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | A.5 | 0.001923 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.10 | 0.00053 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.108 | 0.001103 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.120 | 0.000037 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.120.1 | 0.000321 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.121 | 0.000135 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.20 | 0.000039 |
ORF7b | 14 | L14L | TtA | CtT | 1 | 1 | AY.36 | 0.000148 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.39 | 0.000025 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | AY.41 | 0.000294 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | AY.47 | 0.000031 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | AY.7 | 0.000196 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | AY.79 | 0.001211 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | B.1.1.282 | 0.011628 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | B.1.1.316 | 0.000925 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | B.1.1.432 | 0.001266 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | B.1.1.63 | 0.000386 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | B.1.177.15 | 0.000631 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | B.1.356 | 0.001727 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | B.1.36 | 0.000146 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | B.1.367 | 0.000792 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | B.1.408 | 0.00369 |
ORF7b | 14 | L14L | Tta | Cta | 1 | 1 | P.1 | 0.000016 |
ORF7b | 14 | L14L | ttA | ttG | 1 | 1 | P.1.14 | 0.000048 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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