CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : Mut = F13del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b13F13del1delTtt-tt154912050.77792127792-27794
ORF7b13F13del1delttTtt-15493270.21110427792-27794
ORF7b13F13del1delTTT-NN154980.0051646227792-27794
ORF7b13F13del1delTTt-Nt154980.0051646227792-27794
ORF7b13F13del1delTTt-At154910.00064557827792-27794

Details of the mutation F13del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b13F13del1Ttt-tt12051549All0.00023
ORF7b13F13del1ttTtt-3271549All0.000063
ORF7b13F13del1TTT-NN81549All0.000002
ORF7b13F13del1TTt-Nt81549All0.000002
ORF7b13F13del1TTt-At11549All0
ORF7b13F13del1Ttt-tt137211B.1.1.70.000123
ORF7b13F13del1ttTtt-70211B.1.1.70.000063
ORF7b13F13del1TTt-Nt3211B.1.1.70.000003
ORF7b13F13del1TTT-NN1211B.1.1.70.000001
ORF7b13F13del1Ttt-tt172193AY.40.000268
ORF7b13F13del1ttTtt-20193AY.40.000031
ORF7b13F13del1TTt-At1193AY.40.000002
ORF7b13F13del1Ttt-tt146149B.10.001337
ORF7b13F13del1ttTtt-3149B.10.000027
ORF7b13F13del1Ttt-tt95101AY.30.000945
ORF7b13F13del1ttTtt-6101AY.30.00006
ORF7b13F13del1Ttt-tt7677AY.250.000457
ORF7b13F13del1ttTtt-177AY.250.000006
ORF7b13F13del1Ttt-tt4954B.1.617.20.000185
ORF7b13F13del1ttTtt-554B.1.617.20.000019
ORF7b13F13del1Ttt-tt3946AY.440.000237
ORF7b13F13del1ttTtt-646AY.440.000037
ORF7b13F13del1TTt-Nt146AY.440.000006
ORF7b13F13del1Ttt-tt3743AY.1030.00023
ORF7b13F13del1ttTtt-643AY.1030.000037
ORF7b13F13del1Ttt-tt3942P.10.000614
ORF7b13F13del1ttTtt-342P.10.000047
ORF7b13F13del1Ttt-tt2340B.1.20.000203
ORF7b13F13del1ttTtt-1640B.1.20.000141
ORF7b13F13del1TTT-NN140B.1.20.000009
ORF7b13F13del1ttTtt-3535B.1.2210.002486
ORF7b13F13del1ttTtt-3034AY.98.10.001453
ORF7b13F13del1Ttt-tt434AY.98.10.000194
ORF7b13F13del1Ttt-tt2929B.1.177.240.037565
ORF7b13F13del1ttTtt-2626N.100.764706
ORF7b13F13del1Ttt-tt1623AY.430.000071
ORF7b13F13del1ttTtt-723AY.430.000031
ORF7b13F13del1Ttt-tt1222B.1.10.000218
ORF7b13F13del1ttTtt-822B.1.10.000145
ORF7b13F13del1TTt-Nt122B.1.10.000018
ORF7b13F13del1TTT-NN122B.1.10.000018
ORF7b13F13del1Ttt-tt1818B.1.36.80.018
ORF7b13F13del1Ttt-tt1217B.1.5260.000282
ORF7b13F13del1ttTtt-517B.1.5260.000118
ORF7b13F13del1Ttt-tt1214AY.50.000248
ORF7b13F13del1ttTtt-214AY.50.000041
ORF7b13F13del1Ttt-tt1214B.1.4290.000282
ORF7b13F13del1TTT-NN114B.1.4290.000024
ORF7b13F13del1ttTtt-114B.1.4290.000024
ORF7b13F13del1Ttt-tt1313AY.80.007879
ORF7b13F13del1Ttt-tt713B.1.1.5190.000278
ORF7b13F13del1ttTtt-613B.1.1.5190.000238
ORF7b13F13del1ttTtt-1212AY.1130.001709
ORF7b13F13del1Ttt-tt1012AY.4.20.000217
ORF7b13F13del1TTT-NN112AY.4.20.000022
ORF7b13F13del1TTt-Nt112AY.4.20.000022
ORF7b13F13del1Ttt-tt1111AY.1000.000506
ORF7b13F13del1Ttt-tt1111AY.1090.008136
ORF7b13F13del1Ttt-tt1111AY.120.10.003531
ORF7b13F13del1Ttt-tt1010B.1.5780.178571
ORF7b13F13del1Ttt-tt99B.1.177.810.001704
ORF7b13F13del1Ttt-tt88AY.1180.000501
ORF7b13F13del1Ttt-tt68AY.980.000474
ORF7b13F13del1ttTtt-28AY.980.000158
ORF7b13F13del1Ttt-tt67AY.260.00017
ORF7b13F13del1ttTtt-17AY.260.000028
ORF7b13F13del1Ttt-tt77AY.750.000392
ORF7b13F13del1Ttt-tt56B.1.1.280.001556
ORF7b13F13del1ttTtt-16B.1.1.280.000311
ORF7b13F13del1Ttt-tt66B.1.1.2980.005172
ORF7b13F13del1Ttt-tt56B.1.1770.000066
ORF7b13F13del1ttTtt-16B.1.1770.000013
ORF7b13F13del1Ttt-tt35AY.1020.00008
ORF7b13F13del1ttTtt-15AY.1020.000027
ORF7b13F13del1TTT-NN15AY.1020.000027
ORF7b13F13del1ttTtt-45AY.200.000155
ORF7b13F13del1TTT-NN15AY.200.000039
ORF7b13F13del1Ttt-tt45AY.390.000099
ORF7b13F13del1ttTtt-15AY.390.000025
ORF7b13F13del1Ttt-tt55AY.460.00052
ORF7b13F13del1ttTtt-45AY.90.00027
ORF7b13F13del1Ttt-tt15AY.90.000068
ORF7b13F13del1Ttt-tt55B.1.1.3010.005896
ORF7b13F13del1Ttt-tt35B.1.3690.000856
ORF7b13F13del1ttTtt-25B.1.3690.00057
ORF7b13F13del1Ttt-tt44AY.230.000279
ORF7b13F13del1Ttt-tt44AY.3.10.000341
ORF7b13F13del1ttTtt-24AY.46.60.000144
ORF7b13F13del1Ttt-tt24AY.46.60.000144
ORF7b13F13del1Ttt-tt34AY.700.000626
ORF7b13F13del1ttTtt-14AY.700.000209
ORF7b13F13del1Ttt-tt34AY.9.20.00011
ORF7b13F13del1ttTtt-14AY.9.20.000037
ORF7b13F13del1Ttt-tt34AY.99.20.000276
ORF7b13F13del1ttTtt-14AY.99.20.000092
ORF7b13F13del1ttTtt-44B.1.1.330.001684
ORF7b13F13del1ttTtt-44B.1.177.860.000734
ORF7b13F13del1Ttt-tt44C.1.20.017021
ORF7b13F13del1Ttt-tt34P.1.140.000143
ORF7b13F13del1ttTtt-14P.1.140.000048
ORF7b13F13del1Ttt-tt33AY.116.10.000934
ORF7b13F13del1Ttt-tt23AY.420.00008
ORF7b13F13del1ttTtt-13AY.420.00004
ORF7b13F13del1Ttt-tt23AY.540.000191
ORF7b13F13del1TTt-Nt13AY.540.000095
ORF7b13F13del1Ttt-tt33AY.60.000123
ORF7b13F13del1Ttt-tt33B.1.1.2220.000612
ORF7b13F13del1Ttt-tt33B.1.1.4340.001046
ORF7b13F13del1Ttt-tt33B.1.1600.000094
ORF7b13F13del1Ttt-tt33B.1.360.000438
ORF7b13F13del1ttTtt-33B.1.4160.003807
ORF7b13F13del1Ttt-tt33B.1.4270.000151
ORF7b13F13del1Ttt-tt23B.1.5960.000174
ORF7b13F13del1ttTtt-13B.1.5960.000087
ORF7b13F13del1Ttt-tt22A.10.000564
ORF7b13F13del1ttTtt-12AY.1080.001103
ORF7b13F13del1Ttt-tt12AY.1080.001103
ORF7b13F13del1Ttt-tt22AY.1100.000225
ORF7b13F13del1Ttt-tt22AY.1190.000071
ORF7b13F13del1TTt-Nt12AY.1200.000037
ORF7b13F13del1Ttt-tt12AY.1200.000037
ORF7b13F13del1ttTtt-22AY.1210.000271
ORF7b13F13del1ttTtt-12AY.190.00114
ORF7b13F13del1Ttt-tt12AY.190.00114
ORF7b13F13del1Ttt-tt22AY.39.10.000079
ORF7b13F13del1Ttt-tt22AY.470.000062
ORF7b13F13del1Ttt-tt22AY.560.00321
ORF7b13F13del1Ttt-tt12AY.680.000274
ORF7b13F13del1TTT-NN12AY.680.000274
ORF7b13F13del1ttTtt-22B.1.1.2160.001781
ORF7b13F13del1Ttt-tt22B.1.1.2320.00363
ORF7b13F13del1Ttt-tt22B.1.1.3060.000877
ORF7b13F13del1Ttt-tt22B.1.1.3180.000604
ORF7b13F13del1Ttt-tt22B.1.1.710.012121
ORF7b13F13del1Ttt-tt22B.1.221.30.001667
ORF7b13F13del1Ttt-tt22B.1.3110.000549
ORF7b13F13del1ttTtt-12B.1.3510.00003
ORF7b13F13del1Ttt-tt12B.1.3510.00003
ORF7b13F13del1Ttt-tt22B.1.351.30.001753
ORF7b13F13del1ttTtt-22B.1.5090.001732
ORF7b13F13del1ttTtt-22B.1.5250.000226
ORF7b13F13del1Ttt-tt22B.1.6320.013423
ORF7b13F13del1Ttt-tt22D.20.00015
ORF7b13F13del1Ttt-tt22P.1.100.000539
ORF7b13F13del1ttTtt-12P.1.70.000319
ORF7b13F13del1Ttt-tt12P.1.70.000319
ORF7b13F13del1Ttt-tt11AD.20.000219
ORF7b13F13del1Ttt-tt11AU.30.00211
ORF7b13F13del1Ttt-tt11AY.1170.000085
ORF7b13F13del1Ttt-tt11AY.140.000088
ORF7b13F13del1Ttt-tt11AY.290.000016
ORF7b13F13del1Ttt-tt11AY.330.000067
ORF7b13F13del1Ttt-tt11AY.340.000097
ORF7b13F13del1ttTtt-11AY.4.10.000737
ORF7b13F13del1Ttt-tt11AY.4.30.000842
ORF7b13F13del1Ttt-tt11AY.450.000122
ORF7b13F13del1ttTtt-11AY.46.30.000934
ORF7b13F13del1Ttt-tt11AY.490.003195
ORF7b13F13del1ttTtt-11AY.590.00053
ORF7b13F13del1Ttt-tt11AY.610.000105
ORF7b13F13del1Ttt-tt11AY.75.10.00018
ORF7b13F13del1ttTtt-11AY.830.001724
ORF7b13F13del1ttTtt-11AY.9.10.000084
ORF7b13F13del1Ttt-tt11AY.920.000287
ORF7b13F13del1Ttt-tt11B0.000128
ORF7b13F13del1ttTtt-11B.1.1.10.000327
ORF7b13F13del1Ttt-tt11B.1.1.1650.015385
ORF7b13F13del1ttTtt-11B.1.1.2200.001859
ORF7b13F13del1ttTtt-11B.1.1.2530.002506
ORF7b13F13del1Ttt-tt11B.1.1.3050.003861
ORF7b13F13del1Ttt-tt11B.1.1.440.00241
ORF7b13F13del1Ttt-tt11B.1.1490.003425
ORF7b13F13del1Ttt-tt11B.1.177.210.000076
ORF7b13F13del1Ttt-tt11B.1.177.580.001332
ORF7b13F13del1Ttt-tt11B.1.1790.003759
ORF7b13F13del1Ttt-tt11B.1.1990.004132
ORF7b13F13del1Ttt-tt11B.1.2400.000216
ORF7b13F13del1ttTtt-11B.1.2430.00007
ORF7b13F13del1Ttt-tt11B.1.2650.001271
ORF7b13F13del1Ttt-tt11B.1.3490.000715
ORF7b13F13del1ttTtt-11B.1.36.220.001208
ORF7b13F13del1Ttt-tt11B.1.36.260.002857
ORF7b13F13del1Ttt-tt11B.1.3980.002976
ORF7b13F13del1Ttt-tt11B.1.4000.000429
ORF7b13F13del1Ttt-tt11B.1.4260.001009
ORF7b13F13del1Ttt-tt11B.1.466.20.000391
ORF7b13F13del1Ttt-tt11B.1.5230.002451
ORF7b13F13del1Ttt-tt11B.1.5640.000426
ORF7b13F13del1Ttt-tt11B.1.5650.00081
ORF7b13F13del1Ttt-tt11B.1.5750.000303
ORF7b13F13del1Ttt-tt11B.1.6090.000479
ORF7b13F13del1Ttt-tt11B.1.6200.000946
ORF7b13F13del1ttTtt-11B.60.00091
ORF7b13F13del1Ttt-tt11P.1.120.000484
ORF7b13F13del1Ttt-tt11P.20.000187
ORF7b13F13del1Ttt-tt11Q.80.000165
ORF7b13F13del1Ttt-tt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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