CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 3 | E3del1 | del | Gaa | -aa | 1147 | 1135 | 0.989538 | 27762-27764 | |
ORF7b | 3 | E3del1 | del | GAa | -Ta | 1147 | 3 | 0.00261552 | 27762-27764 | |
ORF7b | 3 | E3del1 | del | GAA | -NN | 1147 | 3 | 0.00261552 | 27762-27764 | |
ORF7b | 3 | E3del1 | del | gAa | g-a | 1147 | 2 | 0.00174368 | 27762-27764 | |
ORF7b | 3 | E3del1 | del | GaA | -aC | 1147 | 1 | 0.00087184 | 27762-27764 | |
ORF7b | 3 | E3del1 | del | gaA | ga- | 1147 | 1 | 0.00087184 | 27762-27764 | |
ORF7b | 3 | E3del1 | del | GaA | -aT | 1147 | 1 | 0.00087184 | 27762-27764 | |
ORF7b | 3 | E3del1 | del | GAa | -Na | 1147 | 1 | 0.00087184 | 27762-27764 |
Details of the mutation E3del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 3 | E3del1 | Gaa | -aa | 1135 | 1147 | All | 0.000217 |
ORF7b | 3 | E3del1 | GAA | -NN | 3 | 1147 | All | 0.000001 |
ORF7b | 3 | E3del1 | GAa | -Ta | 3 | 1147 | All | 0.000001 |
ORF7b | 3 | E3del1 | gAa | g-a | 2 | 1147 | All | 0 |
ORF7b | 3 | E3del1 | GaA | -aC | 1 | 1147 | All | 0 |
ORF7b | 3 | E3del1 | GaA | -aT | 1 | 1147 | All | 0 |
ORF7b | 3 | E3del1 | GAa | -Na | 1 | 1147 | All | 0 |
ORF7b | 3 | E3del1 | gaA | ga- | 1 | 1147 | All | 0 |
ORF7b | 3 | E3del1 | Gaa | -aa | 535 | 541 | B.1.1.7 | 0.000479 |
ORF7b | 3 | E3del1 | GAa | -Ta | 3 | 541 | B.1.1.7 | 0.000003 |
ORF7b | 3 | E3del1 | gAa | g-a | 1 | 541 | B.1.1.7 | 0.000001 |
ORF7b | 3 | E3del1 | GaA | -aC | 1 | 541 | B.1.1.7 | 0.000001 |
ORF7b | 3 | E3del1 | GAA | -NN | 1 | 541 | B.1.1.7 | 0.000001 |
ORF7b | 3 | E3del1 | Gaa | -aa | 99 | 99 | AY.4 | 0.000154 |
ORF7b | 3 | E3del1 | Gaa | -aa | 49 | 49 | AY.118 | 0.00307 |
ORF7b | 3 | E3del1 | Gaa | -aa | 46 | 46 | P.1 | 0.000725 |
ORF7b | 3 | E3del1 | Gaa | -aa | 39 | 39 | B.1.617.2 | 0.000147 |
ORF7b | 3 | E3del1 | Gaa | -aa | 34 | 34 | B.1.2 | 0.000299 |
ORF7b | 3 | E3del1 | Gaa | -aa | 33 | 33 | B.1.1.284 | 0.003544 |
ORF7b | 3 | E3del1 | Gaa | -aa | 23 | 23 | B.1.192 | 0.212963 |
ORF7b | 3 | E3del1 | Gaa | -aa | 15 | 15 | AY.103 | 0.000093 |
ORF7b | 3 | E3del1 | Gaa | -aa | 14 | 14 | AY.25 | 0.000084 |
ORF7b | 3 | E3del1 | Gaa | -aa | 12 | 12 | B.1.1.214 | 0.000665 |
ORF7b | 3 | E3del1 | Gaa | -aa | 12 | 12 | B.1.427 | 0.000606 |
ORF7b | 3 | E3del1 | Gaa | -aa | 9 | 11 | AY.43 | 0.00004 |
ORF7b | 3 | E3del1 | GaA | -aT | 1 | 11 | AY.43 | 0.000004 |
ORF7b | 3 | E3del1 | GAA | -NN | 1 | 11 | AY.43 | 0.000004 |
ORF7b | 3 | E3del1 | Gaa | -aa | 10 | 11 | B.1.1 | 0.000181 |
ORF7b | 3 | E3del1 | gAa | g-a | 1 | 11 | B.1.1 | 0.000018 |
ORF7b | 3 | E3del1 | Gaa | -aa | 10 | 10 | AY.99.2 | 0.000922 |
ORF7b | 3 | E3del1 | Gaa | -aa | 10 | 10 | B.1.351 | 0.000297 |
ORF7b | 3 | E3del1 | Gaa | -aa | 9 | 9 | AY.3 | 0.00009 |
ORF7b | 3 | E3del1 | Gaa | -aa | 9 | 9 | D.2 | 0.000675 |
ORF7b | 3 | E3del1 | Gaa | -aa | 8 | 8 | AY.100 | 0.000368 |
ORF7b | 3 | E3del1 | Gaa | -aa | 8 | 8 | C.37 | 0.000929 |
ORF7b | 3 | E3del1 | Gaa | -aa | 6 | 7 | B.1 | 0.000055 |
ORF7b | 3 | E3del1 | GAa | -Na | 1 | 7 | B.1 | 0.000009 |
ORF7b | 3 | E3del1 | Gaa | -aa | 7 | 7 | B.1.160 | 0.000218 |
ORF7b | 3 | E3del1 | Gaa | -aa | 7 | 7 | B.1.429 | 0.000165 |
ORF7b | 3 | E3del1 | Gaa | -aa | 6 | 6 | B.1.177 | 0.000079 |
ORF7b | 3 | E3del1 | Gaa | -aa | 5 | 6 | P.1.14 | 0.000239 |
ORF7b | 3 | E3del1 | gaA | ga- | 1 | 6 | P.1.14 | 0.000048 |
ORF7b | 3 | E3del1 | Gaa | -aa | 5 | 5 | AY.39 | 0.000124 |
ORF7b | 3 | E3del1 | Gaa | -aa | 4 | 4 | AY.114 | 0.000924 |
ORF7b | 3 | E3del1 | Gaa | -aa | 4 | 4 | AY.79 | 0.004843 |
ORF7b | 3 | E3del1 | Gaa | -aa | 4 | 4 | B.1.1.220 | 0.007435 |
ORF7b | 3 | E3del1 | Gaa | -aa | 4 | 4 | B.1.595 | 0.001044 |
ORF7b | 3 | E3del1 | Gaa | -aa | 4 | 4 | B.1.621 | 0.000354 |
ORF7b | 3 | E3del1 | Gaa | -aa | 4 | 4 | B.1.637 | 0.000292 |
ORF7b | 3 | E3del1 | Gaa | -aa | 4 | 4 | P.2 | 0.000747 |
ORF7b | 3 | E3del1 | Gaa | -aa | 3 | 3 | AY.33 | 0.0002 |
ORF7b | 3 | E3del1 | Gaa | -aa | 3 | 3 | AY.44 | 0.000018 |
ORF7b | 3 | E3del1 | Gaa | -aa | 3 | 3 | AY.46 | 0.000312 |
ORF7b | 3 | E3del1 | Gaa | -aa | 3 | 3 | AY.5 | 0.000062 |
ORF7b | 3 | E3del1 | Gaa | -aa | 3 | 3 | AY.69 | 0.00056 |
ORF7b | 3 | E3del1 | Gaa | -aa | 3 | 3 | B.1.1.434 | 0.001046 |
ORF7b | 3 | E3del1 | Gaa | -aa | 3 | 3 | B.1.1.57 | 0.034483 |
ORF7b | 3 | E3del1 | Gaa | -aa | 3 | 3 | B.1.526 | 0.000071 |
ORF7b | 3 | E3del1 | Gaa | -aa | 3 | 3 | B.1.628 | 0.001057 |
ORF7b | 3 | E3del1 | Gaa | -aa | 2 | 2 | AY.94 | 0.000885 |
ORF7b | 3 | E3del1 | Gaa | -aa | 2 | 2 | B.1.1.33 | 0.000842 |
ORF7b | 3 | E3del1 | Gaa | -aa | 2 | 2 | B.1.1.519 | 0.000079 |
ORF7b | 3 | E3del1 | Gaa | -aa | 2 | 2 | B.1.177.16 | 0.001329 |
ORF7b | 3 | E3del1 | Gaa | -aa | 2 | 2 | B.1.177.7 | 0.00033 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 2 | B.1.258 | 0.000067 |
ORF7b | 3 | E3del1 | GAA | -NN | 1 | 2 | B.1.258 | 0.000067 |
ORF7b | 3 | E3del1 | Gaa | -aa | 2 | 2 | B.1.351.2 | 0.000605 |
ORF7b | 3 | E3del1 | Gaa | -aa | 2 | 2 | B.1.36.22 | 0.002415 |
ORF7b | 3 | E3del1 | Gaa | -aa | 2 | 2 | Q.1 | 0.000253 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | AE.8 | 0.000489 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | AN.1 | 0.02 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | AU.1 | 0.001266 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | AY.110 | 0.000113 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | AY.117 | 0.000085 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | AY.119 | 0.000035 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | AY.20 | 0.000039 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | AY.23 | 0.00007 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | AY.29 | 0.000016 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | AY.32 | 0.000532 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | AY.4.2 | 0.000022 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | AY.6 | 0.000041 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | AY.61 | 0.000105 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B | 0.000128 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.1.13 | 0.035714 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.1.165 | 0.015385 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.1.194 | 0.00495 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.1.306 | 0.000438 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.1.348 | 0.000796 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.1.397 | 0.002252 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.1.409 | 0.002833 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.1.416 | 0.000905 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.1.482 | 0.023256 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.139 | 0.000733 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.177.50 | 0.004695 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.177.77 | 0.000726 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.205 | 0.02381 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.241 | 0.000812 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.243 | 0.00007 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.258.3 | 0.001675 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.36 | 0.000146 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.36.16 | 0.001425 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.36.21 | 0.00216 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.36.31 | 0.001751 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.362 | 0.001541 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.367 | 0.000792 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.369 | 0.000285 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.375 | 0.00082 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.413 | 0.004255 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.621.1 | 0.000506 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | B.1.623 | 0.000536 |
ORF7b | 3 | E3del1 | Gaa | -aa | 1 | 1 | P.1.12 | 0.000484 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|