CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : Mut = E3del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b3E3del1delGaa-aa114711350.98953827762-27764
ORF7b3E3del1delGAa-Ta114730.0026155227762-27764
ORF7b3E3del1delGAA-NN114730.0026155227762-27764
ORF7b3E3del1delgAag-a114720.0017436827762-27764
ORF7b3E3del1delGaA-aC114710.0008718427762-27764
ORF7b3E3del1delgaAga-114710.0008718427762-27764
ORF7b3E3del1delGaA-aT114710.0008718427762-27764
ORF7b3E3del1delGAa-Na114710.0008718427762-27764

Details of the mutation E3del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b3E3del1Gaa-aa11351147All0.000217
ORF7b3E3del1GAA-NN31147All0.000001
ORF7b3E3del1GAa-Ta31147All0.000001
ORF7b3E3del1gAag-a21147All0
ORF7b3E3del1GaA-aC11147All0
ORF7b3E3del1GaA-aT11147All0
ORF7b3E3del1GAa-Na11147All0
ORF7b3E3del1gaAga-11147All0
ORF7b3E3del1Gaa-aa535541B.1.1.70.000479
ORF7b3E3del1GAa-Ta3541B.1.1.70.000003
ORF7b3E3del1gAag-a1541B.1.1.70.000001
ORF7b3E3del1GaA-aC1541B.1.1.70.000001
ORF7b3E3del1GAA-NN1541B.1.1.70.000001
ORF7b3E3del1Gaa-aa9999AY.40.000154
ORF7b3E3del1Gaa-aa4949AY.1180.00307
ORF7b3E3del1Gaa-aa4646P.10.000725
ORF7b3E3del1Gaa-aa3939B.1.617.20.000147
ORF7b3E3del1Gaa-aa3434B.1.20.000299
ORF7b3E3del1Gaa-aa3333B.1.1.2840.003544
ORF7b3E3del1Gaa-aa2323B.1.1920.212963
ORF7b3E3del1Gaa-aa1515AY.1030.000093
ORF7b3E3del1Gaa-aa1414AY.250.000084
ORF7b3E3del1Gaa-aa1212B.1.1.2140.000665
ORF7b3E3del1Gaa-aa1212B.1.4270.000606
ORF7b3E3del1Gaa-aa911AY.430.00004
ORF7b3E3del1GaA-aT111AY.430.000004
ORF7b3E3del1GAA-NN111AY.430.000004
ORF7b3E3del1Gaa-aa1011B.1.10.000181
ORF7b3E3del1gAag-a111B.1.10.000018
ORF7b3E3del1Gaa-aa1010AY.99.20.000922
ORF7b3E3del1Gaa-aa1010B.1.3510.000297
ORF7b3E3del1Gaa-aa99AY.30.00009
ORF7b3E3del1Gaa-aa99D.20.000675
ORF7b3E3del1Gaa-aa88AY.1000.000368
ORF7b3E3del1Gaa-aa88C.370.000929
ORF7b3E3del1Gaa-aa67B.10.000055
ORF7b3E3del1GAa-Na17B.10.000009
ORF7b3E3del1Gaa-aa77B.1.1600.000218
ORF7b3E3del1Gaa-aa77B.1.4290.000165
ORF7b3E3del1Gaa-aa66B.1.1770.000079
ORF7b3E3del1Gaa-aa56P.1.140.000239
ORF7b3E3del1gaAga-16P.1.140.000048
ORF7b3E3del1Gaa-aa55AY.390.000124
ORF7b3E3del1Gaa-aa44AY.1140.000924
ORF7b3E3del1Gaa-aa44AY.790.004843
ORF7b3E3del1Gaa-aa44B.1.1.2200.007435
ORF7b3E3del1Gaa-aa44B.1.5950.001044
ORF7b3E3del1Gaa-aa44B.1.6210.000354
ORF7b3E3del1Gaa-aa44B.1.6370.000292
ORF7b3E3del1Gaa-aa44P.20.000747
ORF7b3E3del1Gaa-aa33AY.330.0002
ORF7b3E3del1Gaa-aa33AY.440.000018
ORF7b3E3del1Gaa-aa33AY.460.000312
ORF7b3E3del1Gaa-aa33AY.50.000062
ORF7b3E3del1Gaa-aa33AY.690.00056
ORF7b3E3del1Gaa-aa33B.1.1.4340.001046
ORF7b3E3del1Gaa-aa33B.1.1.570.034483
ORF7b3E3del1Gaa-aa33B.1.5260.000071
ORF7b3E3del1Gaa-aa33B.1.6280.001057
ORF7b3E3del1Gaa-aa22AY.940.000885
ORF7b3E3del1Gaa-aa22B.1.1.330.000842
ORF7b3E3del1Gaa-aa22B.1.1.5190.000079
ORF7b3E3del1Gaa-aa22B.1.177.160.001329
ORF7b3E3del1Gaa-aa22B.1.177.70.00033
ORF7b3E3del1Gaa-aa12B.1.2580.000067
ORF7b3E3del1GAA-NN12B.1.2580.000067
ORF7b3E3del1Gaa-aa22B.1.351.20.000605
ORF7b3E3del1Gaa-aa22B.1.36.220.002415
ORF7b3E3del1Gaa-aa22Q.10.000253
ORF7b3E3del1Gaa-aa11AE.80.000489
ORF7b3E3del1Gaa-aa11AN.10.02
ORF7b3E3del1Gaa-aa11AU.10.001266
ORF7b3E3del1Gaa-aa11AY.1100.000113
ORF7b3E3del1Gaa-aa11AY.1170.000085
ORF7b3E3del1Gaa-aa11AY.1190.000035
ORF7b3E3del1Gaa-aa11AY.200.000039
ORF7b3E3del1Gaa-aa11AY.230.00007
ORF7b3E3del1Gaa-aa11AY.290.000016
ORF7b3E3del1Gaa-aa11AY.320.000532
ORF7b3E3del1Gaa-aa11AY.4.20.000022
ORF7b3E3del1Gaa-aa11AY.60.000041
ORF7b3E3del1Gaa-aa11AY.610.000105
ORF7b3E3del1Gaa-aa11B0.000128
ORF7b3E3del1Gaa-aa11B.1.1.130.035714
ORF7b3E3del1Gaa-aa11B.1.1.1650.015385
ORF7b3E3del1Gaa-aa11B.1.1.1940.00495
ORF7b3E3del1Gaa-aa11B.1.1.3060.000438
ORF7b3E3del1Gaa-aa11B.1.1.3180.000302
ORF7b3E3del1Gaa-aa11B.1.1.3480.000796
ORF7b3E3del1Gaa-aa11B.1.1.3970.002252
ORF7b3E3del1Gaa-aa11B.1.1.4090.002833
ORF7b3E3del1Gaa-aa11B.1.1.4160.000905
ORF7b3E3del1Gaa-aa11B.1.1.4820.023256
ORF7b3E3del1Gaa-aa11B.1.1390.000733
ORF7b3E3del1Gaa-aa11B.1.177.500.004695
ORF7b3E3del1Gaa-aa11B.1.177.770.000726
ORF7b3E3del1Gaa-aa11B.1.2050.02381
ORF7b3E3del1Gaa-aa11B.1.2410.000812
ORF7b3E3del1Gaa-aa11B.1.2430.00007
ORF7b3E3del1Gaa-aa11B.1.258.30.001675
ORF7b3E3del1Gaa-aa11B.1.360.000146
ORF7b3E3del1Gaa-aa11B.1.36.160.001425
ORF7b3E3del1Gaa-aa11B.1.36.210.00216
ORF7b3E3del1Gaa-aa11B.1.36.310.001751
ORF7b3E3del1Gaa-aa11B.1.3620.001541
ORF7b3E3del1Gaa-aa11B.1.3670.000792
ORF7b3E3del1Gaa-aa11B.1.3690.000285
ORF7b3E3del1Gaa-aa11B.1.3750.00082
ORF7b3E3del1Gaa-aa11B.1.4130.004255
ORF7b3E3del1Gaa-aa11B.1.621.10.000506
ORF7b3E3del1Gaa-aa11B.1.6230.000536
ORF7b3E3del1Gaa-aa11P.1.120.000484