CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 3 | E3X | nonsyn | Gaa | Taa | 1972 | 1959 | 0.993408 | 27762-27764 | |
ORF7b | 3 | E3X | nonsyn | GAa | TGa | 1972 | 12 | 0.00608519 | 27762-27764 | |
ORF7b | 3 | E3X | nonsyn | GaA | TaG | 1972 | 1 | 0.000507099 | 27762-27764 |
Details of the mutation E3X within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 3 | E3X | Gaa | Taa | 1959 | 1972 | All | 0.000375 |
ORF7b | 3 | E3X | GAa | TGa | 12 | 1972 | All | 0.000002 |
ORF7b | 3 | E3X | GaA | TaG | 1 | 1972 | All | 0 |
ORF7b | 3 | E3X | Gaa | Taa | 428 | 437 | B.1.1.7 | 0.000383 |
ORF7b | 3 | E3X | GAa | TGa | 9 | 437 | B.1.1.7 | 0.000008 |
ORF7b | 3 | E3X | Gaa | Taa | 190 | 190 | B.1.621 | 0.016819 |
ORF7b | 3 | E3X | Gaa | Taa | 188 | 188 | B.1.617.2 | 0.000708 |
ORF7b | 3 | E3X | Gaa | Taa | 142 | 142 | AY.34.1 | 0.072412 |
ORF7b | 3 | E3X | Gaa | Taa | 115 | 115 | AY.4 | 0.000179 |
ORF7b | 3 | E3X | Gaa | Taa | 107 | 107 | B.1.362.2 | 0.504717 |
ORF7b | 3 | E3X | Gaa | Taa | 61 | 61 | B.1.2 | 0.000537 |
ORF7b | 3 | E3X | Gaa | Taa | 49 | 49 | B.1.351 | 0.001457 |
ORF7b | 3 | E3X | Gaa | Taa | 43 | 43 | AY.102 | 0.00114 |
ORF7b | 3 | E3X | Gaa | Taa | 38 | 38 | AY.43 | 0.000168 |
ORF7b | 3 | E3X | Gaa | Taa | 34 | 34 | B.1.243 | 0.002366 |
ORF7b | 3 | E3X | Gaa | Taa | 33 | 33 | AY.44 | 0.000201 |
ORF7b | 3 | E3X | Gaa | Taa | 31 | 31 | B.1.177.51 | 0.141553 |
ORF7b | 3 | E3X | Gaa | Taa | 30 | 30 | P.1 | 0.000473 |
ORF7b | 3 | E3X | Gaa | Taa | 26 | 26 | AY.4.2 | 0.000564 |
ORF7b | 3 | E3X | Gaa | Taa | 22 | 22 | AY.103 | 0.000137 |
ORF7b | 3 | E3X | Gaa | Taa | 21 | 21 | AY.46.6 | 0.001516 |
ORF7b | 3 | E3X | Gaa | Taa | 21 | 21 | B.1.429 | 0.000494 |
ORF7b | 3 | E3X | Gaa | Taa | 19 | 19 | B.1.596 | 0.001656 |
ORF7b | 3 | E3X | Gaa | Taa | 16 | 16 | AY.25 | 0.000096 |
ORF7b | 3 | E3X | Gaa | Taa | 15 | 15 | B.1.177 | 0.000198 |
ORF7b | 3 | E3X | Gaa | Taa | 12 | 12 | AY.23 | 0.000837 |
ORF7b | 3 | E3X | Gaa | Taa | 12 | 12 | B.1 | 0.00011 |
ORF7b | 3 | E3X | Gaa | Taa | 12 | 12 | B.1.1 | 0.000218 |
ORF7b | 3 | E3X | Gaa | Taa | 12 | 12 | B.1.526 | 0.000282 |
ORF7b | 3 | E3X | Gaa | Taa | 11 | 11 | AY.3 | 0.000109 |
ORF7b | 3 | E3X | Gaa | Taa | 11 | 11 | B.1.1.519 | 0.000437 |
ORF7b | 3 | E3X | Gaa | Taa | 10 | 10 | B.1.351.2 | 0.003026 |
ORF7b | 3 | E3X | Gaa | Taa | 9 | 9 | B.1.1.50 | 0.00611 |
ORF7b | 3 | E3X | Gaa | Taa | 9 | 9 | B.1.177.81 | 0.001704 |
ORF7b | 3 | E3X | Gaa | Taa | 7 | 7 | AY.39 | 0.000173 |
ORF7b | 3 | E3X | Gaa | Taa | 7 | 7 | AY.98.1 | 0.000339 |
ORF7b | 3 | E3X | Gaa | Taa | 6 | 6 | AY.42 | 0.000241 |
ORF7b | 3 | E3X | Gaa | Taa | 6 | 6 | AY.85 | 0.002563 |
ORF7b | 3 | E3X | Gaa | Taa | 6 | 6 | B.1.1.28 | 0.001867 |
ORF7b | 3 | E3X | Gaa | Taa | 6 | 6 | B.1.36 | 0.000875 |
ORF7b | 3 | E3X | Gaa | Taa | 5 | 5 | AY.61 | 0.000524 |
ORF7b | 3 | E3X | Gaa | Taa | 5 | 5 | B.1.1.317 | 0.002058 |
ORF7b | 3 | E3X | Gaa | Taa | 5 | 5 | B.1.221 | 0.000355 |
ORF7b | 3 | E3X | Gaa | Taa | 5 | 5 | P.1.14 | 0.000239 |
ORF7b | 3 | E3X | Gaa | Taa | 4 | 4 | AY.100 | 0.000184 |
ORF7b | 3 | E3X | Gaa | Taa | 4 | 4 | AY.119 | 0.000141 |
ORF7b | 3 | E3X | Gaa | Taa | 4 | 4 | AY.75 | 0.000224 |
ORF7b | 3 | E3X | Gaa | Taa | 4 | 4 | B.1.1.369 | 0.001785 |
ORF7b | 3 | E3X | Gaa | Taa | 4 | 4 | B.1.561 | 0.001588 |
ORF7b | 3 | E3X | Gaa | Taa | 4 | 4 | B.1.637 | 0.000292 |
ORF7b | 3 | E3X | Gaa | Taa | 4 | 4 | P.1.17 | 0.000647 |
ORF7b | 3 | E3X | Gaa | Taa | 4 | 4 | P.2 | 0.000747 |
ORF7b | 3 | E3X | Gaa | Taa | 4 | 4 | Q.1 | 0.000505 |
ORF7b | 3 | E3X | Gaa | Taa | 3 | 3 | 0.166667 | |
ORF7b | 3 | E3X | Gaa | Taa | 3 | 3 | AY.29 | 0.000047 |
ORF7b | 3 | E3X | Gaa | Taa | 3 | 3 | AY.40 | 0.002893 |
ORF7b | 3 | E3X | Gaa | Taa | 3 | 3 | AY.45 | 0.000365 |
ORF7b | 3 | E3X | Gaa | Taa | 3 | 3 | AY.67 | 0.001393 |
ORF7b | 3 | E3X | Gaa | Taa | 3 | 3 | AY.99.2 | 0.000276 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 3 | B | 0.000256 |
ORF7b | 3 | E3X | GAa | TGa | 1 | 3 | B | 0.000128 |
ORF7b | 3 | E3X | Gaa | Taa | 3 | 3 | B.1.1.298 | 0.002586 |
ORF7b | 3 | E3X | Gaa | Taa | 3 | 3 | B.1.177.60 | 0.000655 |
ORF7b | 3 | E3X | Gaa | Taa | 3 | 3 | B.1.218 | 0.015464 |
ORF7b | 3 | E3X | Gaa | Taa | 3 | 3 | B.1.234 | 0.000396 |
ORF7b | 3 | E3X | Gaa | Taa | 3 | 3 | B.1.525 | 0.000339 |
ORF7b | 3 | E3X | Gaa | Taa | 3 | 3 | R.1 | 0.00027 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | AY.113 | 0.000285 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | AY.116 | 0.000574 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | AY.46 | 0.000208 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | AY.5 | 0.000041 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | AY.74 | 0.000231 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | AY.86 | 0.00166 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | B.1.1.214 | 0.000111 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 2 | B.1.1.282 | 0.011628 |
ORF7b | 3 | E3X | GaA | TaG | 1 | 2 | B.1.1.282 | 0.011628 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | B.1.1.348 | 0.001592 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | B.1.160 | 0.000062 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | B.1.177.21 | 0.000153 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | B.1.408 | 0.00738 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | B.1.470 | 0.002809 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | B.1.618 | 0.008065 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | B.1.623 | 0.001073 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | C.35 | 0.001548 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | C.36.3.1 | 0.005435 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | P.1.10 | 0.000539 |
ORF7b | 3 | E3X | Gaa | Taa | 2 | 2 | Q.8 | 0.00033 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | A | 0.000387 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | A.1 | 0.000282 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | A.27 | 0.001656 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AD.2 | 0.000219 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.10 | 0.00053 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.106 | 0.000335 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.109 | 0.00074 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.114 | 0.000231 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.118 | 0.000063 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.120 | 0.000037 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.13 | 0.000161 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.14 | 0.000088 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.16.1 | 0.00047 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.20 | 0.000039 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.23.1 | 0.000417 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.27 | 0.000065 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.33 | 0.000067 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.34 | 0.000097 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.36 | 0.000148 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.39.1 | 0.00004 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.5.3 | 0.000337 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.50 | 0.000799 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.52 | 0.000814 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.6 | 0.000041 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.63 | 0.000387 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.65 | 0.000533 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.7 | 0.000196 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.9.2 | 0.000037 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | AY.91 | 0.00073 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.1.1 | 0.000327 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.1.189 | 0.001513 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.1.222 | 0.000204 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.1.265 | 0.003155 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.1.419 | 0.007407 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.1.435 | 0.034483 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.1.70 | 0.000341 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.177.43 | 0.001477 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.177.54 | 0.000606 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.177.57 | 0.000281 |
ORF7b | 3 | E3X | GAa | TGa | 1 | 1 | B.1.177.63 | 0.002703 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.177.73 | 0.000566 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.240 | 0.000216 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.301 | 0.005917 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.36.8 | 0.001 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.361 | 0.001289 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.369 | 0.000285 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.417 | 0.028571 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.427 | 0.00005 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.428 | 0.00102 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.438 | 0.006536 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.588 | 0.00091 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.620 | 0.000946 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.1.628 | 0.000352 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | B.4.1 | 0.018868 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | D.2 | 0.000075 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | P.1.12 | 0.000484 |
ORF7b | 3 | E3X | GAa | TGa | 1 | 1 | P.1.4 | 0.000977 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | P.4 | 0.003802 |
ORF7b | 3 | E3X | Gaa | Taa | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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