CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF7b | 41 | C41F | nonsyn | tGt | tTt | 4162 | 4159 | 0.999279 | 27876-27878 | |
ORF7b | 41 | C41F | nonsyn | tGT | tTC | 4162 | 3 | 0.000720807 | 27876-27878 |
Details of the mutation C41F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF7b | 41 | C41F | tGt | tTt | 4159 | 4162 | All | 0.000795 |
ORF7b | 41 | C41F | tGT | tTC | 3 | 4162 | All | 0.000001 |
ORF7b | 41 | C41F | tGt | tTt | 610 | 610 | B.1.160 | 0.019024 |
ORF7b | 41 | C41F | tGt | tTt | 462 | 462 | B.1.1.7 | 0.000414 |
ORF7b | 41 | C41F | tGt | tTt | 409 | 409 | B.1.160.26 | 0.990315 |
ORF7b | 41 | C41F | tGt | tTt | 253 | 253 | AY.4 | 0.000394 |
ORF7b | 41 | C41F | tGt | tTt | 167 | 167 | AY.44 | 0.001016 |
ORF7b | 41 | C41F | tGt | tTt | 160 | 160 | B.1.1.237 | 0.864865 |
ORF7b | 41 | C41F | tGt | tTt | 137 | 137 | B.1.160.18 | 1 |
ORF7b | 41 | C41F | tGt | tTt | 134 | 134 | B.1.617.2 | 0.000505 |
ORF7b | 41 | C41F | tGt | tTt | 128 | 128 | B.1.1.416 | 0.115837 |
ORF7b | 41 | C41F | tGt | tTt | 117 | 117 | AY.103 | 0.000726 |
ORF7b | 41 | C41F | tGt | tTt | 116 | 116 | B.1.177.17 | 0.095238 |
ORF7b | 41 | C41F | tGt | tTt | 115 | 115 | AY.43 | 0.00051 |
ORF7b | 41 | C41F | tGt | tTt | 114 | 114 | A.6 | 0.584615 |
ORF7b | 41 | C41F | tGt | tTt | 84 | 84 | B.1.1 | 0.001524 |
ORF7b | 41 | C41F | tGt | tTt | 84 | 84 | B.1.177 | 0.001106 |
ORF7b | 41 | C41F | tGt | tTt | 67 | 67 | B.1.1.176 | 0.029438 |
ORF7b | 41 | C41F | tGt | tTt | 66 | 66 | B.1.2 | 0.000581 |
ORF7b | 41 | C41F | tGt | tTt | 61 | 61 | AY.25 | 0.000367 |
ORF7b | 41 | C41F | tGt | tTt | 51 | 51 | B.1.1.519 | 0.002025 |
ORF7b | 41 | C41F | tGt | tTt | 47 | 47 | B.1 | 0.00043 |
ORF7b | 41 | C41F | tGt | tTt | 40 | 41 | P.1 | 0.00063 |
ORF7b | 41 | C41F | tGT | tTC | 1 | 41 | P.1 | 0.000016 |
ORF7b | 41 | C41F | tGt | tTt | 35 | 35 | AY.107 | 0.016309 |
ORF7b | 41 | C41F | tGt | tTt | 35 | 35 | B.1.1.37 | 0.00675 |
ORF7b | 41 | C41F | tGt | tTt | 34 | 34 | AY.7.2 | 0.019016 |
ORF7b | 41 | C41F | tGt | tTt | 31 | 31 | B.1.177.12 | 0.004703 |
ORF7b | 41 | C41F | tGt | tTt | 26 | 26 | AY.3 | 0.000259 |
ORF7b | 41 | C41F | tGt | tTt | 25 | 25 | B.1.1.376 | 0.14881 |
ORF7b | 41 | C41F | tGt | tTt | 24 | 24 | B.1.1.325 | 0.615385 |
ORF7b | 41 | C41F | tGt | tTt | 20 | 20 | AY.102 | 0.00053 |
ORF7b | 41 | C41F | tGt | tTt | 20 | 20 | C.37 | 0.002321 |
ORF7b | 41 | C41F | tGt | tTt | 15 | 15 | AY.39 | 0.000371 |
ORF7b | 41 | C41F | tGt | tTt | 13 | 13 | A.2.5.2 | 0.02044 |
ORF7b | 41 | C41F | tGt | tTt | 12 | 12 | AY.75 | 0.000672 |
ORF7b | 41 | C41F | tGt | tTt | 12 | 12 | B.1.177.6 | 0.011719 |
ORF7b | 41 | C41F | tGt | tTt | 11 | 11 | B.1.1.222 | 0.002244 |
ORF7b | 41 | C41F | tGt | tTt | 11 | 11 | B.1.351 | 0.000327 |
ORF7b | 41 | C41F | tGt | tTt | 9 | 9 | AY.33 | 0.000601 |
ORF7b | 41 | C41F | tGt | tTt | 9 | 9 | B.1.1.311 | 0.003223 |
ORF7b | 41 | C41F | tGt | tTt | 9 | 9 | B.1.1.50 | 0.00611 |
ORF7b | 41 | C41F | tGt | tTt | 9 | 9 | B.1.221 | 0.000639 |
ORF7b | 41 | C41F | tGt | tTt | 9 | 9 | B.1.36.29 | 0.004656 |
ORF7b | 41 | C41F | tGt | tTt | 8 | 8 | AY.54 | 0.000763 |
ORF7b | 41 | C41F | tGt | tTt | 8 | 8 | B.1.1.273 | 0.054054 |
ORF7b | 41 | C41F | tGt | tTt | 8 | 8 | B.1.427 | 0.000404 |
ORF7b | 41 | C41F | tGt | tTt | 7 | 7 | B.1.1.28 | 0.002179 |
ORF7b | 41 | C41F | tGt | tTt | 7 | 7 | B.1.1.33 | 0.002946 |
ORF7b | 41 | C41F | tGt | tTt | 7 | 7 | B.1.258 | 0.000466 |
ORF7b | 41 | C41F | tGt | tTt | 7 | 7 | B.1.351.2 | 0.002118 |
ORF7b | 41 | C41F | tGt | tTt | 6 | 6 | AY.36 | 0.000889 |
ORF7b | 41 | C41F | tGt | tTt | 6 | 6 | AY.98 | 0.000474 |
ORF7b | 41 | C41F | tGt | tTt | 6 | 6 | B.1.1.277 | 0.004552 |
ORF7b | 41 | C41F | tGt | tTt | 6 | 6 | B.1.1.398 | 0.019355 |
ORF7b | 41 | C41F | tGt | tTt | 6 | 6 | B.1.621 | 0.000531 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | AY.116 | 0.001434 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | AY.117 | 0.000423 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | AY.24 | 0.002155 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | AY.9.1 | 0.000419 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | B.1.160.32 | 0.021459 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | B.1.36 | 0.00073 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | B.1.371 | 0.005612 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | B.1.523 | 0.012255 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | B.1.617.1 | 0.000645 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | P.1.14 | 0.000239 |
ORF7b | 41 | C41F | tGt | tTt | 5 | 5 | P.1.15 | 0.001162 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | AY.120 | 0.000149 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | AY.39.1 | 0.000158 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | AY.5 | 0.000083 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | B.1.1.216 | 0.003562 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | B.1.164 | 0.059701 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | B.1.395 | 0.028169 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | B.1.397 | 0.019417 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | B.1.470 | 0.005618 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | B.1.509 | 0.003463 |
ORF7b | 41 | C41F | tGt | tTt | 4 | 4 | B.1.589 | 0.030303 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.116.1 | 0.000934 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.119 | 0.000106 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.120.2.1 | 0.001495 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.20 | 0.000117 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.26 | 0.000085 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.27 | 0.000194 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.29 | 0.000047 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.46.5 | 0.000595 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.47 | 0.000093 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | AY.9 | 0.000203 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.1.214 | 0.000166 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.1.432 | 0.003797 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.1.70 | 0.001023 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.110.3 | 0.002155 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.177.19 | 0.004292 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.177.21 | 0.000229 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.177.37 | 0.081081 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.243 | 0.000209 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.415 | 0.042857 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.564 | 0.001278 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | B.1.96 | 0.056604 |
ORF7b | 41 | C41F | tGt | tTt | 3 | 3 | Q.8 | 0.000495 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AD.2 | 0.000438 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AY.113 | 0.000285 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AY.23 | 0.000139 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 2 | AY.30 | 0.000396 |
ORF7b | 41 | C41F | tGT | tTC | 1 | 2 | AY.30 | 0.000396 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AY.35 | 0.000466 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AY.40 | 0.001929 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AY.74 | 0.000231 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AY.9.2 | 0.000073 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | AY.91 | 0.001461 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.1.1 | 0.000653 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.1.29 | 0.020619 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.1.326 | 0.003521 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.1.397 | 0.004505 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.177.44 | 0.001038 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.177.81 | 0.000379 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.177.82 | 0.000955 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.239 | 0.002442 |
ORF7b | 41 | C41F | tGT | tTC | 1 | 2 | B.1.260 | 0.003344 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 2 | B.1.260 | 0.003344 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.369 | 0.00057 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.526 | 0.000047 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.588 | 0.00182 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.596 | 0.000174 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | B.1.637 | 0.000146 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | C.36 | 0.001821 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | D.2 | 0.00015 |
ORF7b | 41 | C41F | tGt | tTt | 2 | 2 | P.1.12 | 0.000968 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | A.1 | 0.000282 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | A.23.1 | 0.000704 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AH.1 | 0.142857 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.100 | 0.000046 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.108 | 0.001103 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.11 | 0.001339 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.115 | 0.005208 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.12 | 0.000316 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.14 | 0.000088 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.2 | 0.000356 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.3.1 | 0.000085 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.34 | 0.000097 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.38 | 0.000499 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.4.2 | 0.000022 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.42 | 0.00004 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.45 | 0.000122 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.46 | 0.000104 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.57 | 0.000656 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.6 | 0.000041 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.61 | 0.000105 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.69 | 0.000187 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.7 | 0.000196 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B | 0.000128 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.220 | 0.001859 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.263 | 0.001558 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.284 | 0.000107 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.305 | 0.003861 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.307 | 0.002532 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.312 | 0.001912 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.317 | 0.000412 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.347 | 0.018182 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.359 | 0.027778 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.39 | 0.00051 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.396 | 0.045455 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.507 | 0.008696 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.512 | 0.028571 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.83 | 0.00271 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.1.88 | 0.071429 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.105 | 0.009615 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.160.12 | 0.00641 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.177.23 | 0.003236 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.177.65 | 0.000665 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.232 | 0.000537 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.315 | 0.006061 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.351.5 | 0.0006 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.367 | 0.000792 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.375 | 0.00082 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.404 | 0.001302 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.422 | 0.000812 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.426 | 0.001009 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.428 | 0.00102 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.429 | 0.000024 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.456 | 0.003268 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.459 | 0.004082 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.561 | 0.000397 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.575.1 | 0.002439 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.582 | 0.000491 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.595 | 0.000261 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.609 | 0.000479 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.628 | 0.000352 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.1.632 | 0.006711 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | B.12 | 0.00641 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | C.16 | 0.00106 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | N.5 | 0.001767 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | P.2 | 0.000187 |
ORF7b | 41 | C41F | tGt | tTt | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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