CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF7b : CodonNum = 5

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF7b5S5LnonsyntCatTa11323113080.99867527768-27770
ORF7b5S5LnonsyntCAtTG11323120.0010597927768-27770
ORF7b5S5LnonsynTCaCTa1132320.00017663227768-27770
ORF7b5S5LnonsynTCACTG1132310.000088315827768-27770
ORF7b5S5SsyntcAtcG7125050.7092727768-27770
ORF7b5S5SsyntcAtcT7121860.26123627768-27770
ORF7b5S5SsyntcAtcC712210.029494427768-27770
ORF7b5S5deldelTCA---639639127768-27770
ORF7b5S5del1delTca-ca5605430.96964327768-27770
ORF7b5S5del1deltcAtc-56070.012527768-27770
ORF7b5S5del1delTCa-Ta56040.0071428627768-27770
ORF7b5S5del1delTCA-NN56030.0053571427768-27770
ORF7b5S5del1deltCat-a56030.0053571427768-27770
ORF7b5S5AnonsynTcaGca272272127768-27770
ORF7b5S5PnonsynTcaCca5353127768-27770
ORF7b5S5XnonsyntCatGa39260.66666727768-27770
ORF7b5S5XnonsyntCatAa39130.33333327768-27770
ORF7b5S5TnonsynTcaAca36350.97222227768-27770
ORF7b5S5TnonsynTcAAcT3610.027777827768-27770
ORF7b5S5del2delTCa--a25210.8427768-27770
ORF7b5S5del2deltCAt--2540.1627768-27770
ORF7b5S5InonsynTCaATa740.57142927768-27770
ORF7b5S5InonsynTCAATT730.42857127768-27770
ORF7b5S5RnonsynTCaAGa11127768-27770
ORF7b5S5FnonsyntCAtTC11127768-27770
ORF7b5S5DnonsynTCAGAC11127768-27770

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF7b5S5LtCatTa1130811323All0.002163
ORF7b5S5LtCAtTG1211323All0.000002
ORF7b5S5LTCaCTa211323All0
ORF7b5S5LTCACTG111323All0
ORF7b5S5LtCatTa54945494B.1.1770.072343
ORF7b5S5LtCatTa26372639B.1.6280.929175
ORF7b5S5LTCaCTa22639B.1.6280.000705
ORF7b5S5StcAtcG505712All0.000097
ORF7b5S5StcAtcT186712All0.000036
ORF7b5S5StcAtcC21712All0.000004
ORF7b5S5delTCA---639639All0.000122
ORF7b5S5del1Tca-ca543560All0.000104
ORF7b5S5del1tcAtc-7560All0.000001
ORF7b5S5del1TCa-Ta4560All0.000001
ORF7b5S5del1TCA-NN3560All0.000001
ORF7b5S5del1tCat-a3560All0.000001
ORF7b5S5LtCatTa537537B.1.1.70.000481
ORF7b5S5del1Tca-ca503507B.1.1.70.00045
ORF7b5S5del1TCA-NN2507B.1.1.70.000002
ORF7b5S5del1tcAtc-2507B.1.1.70.000002
ORF7b5S5LtCatTa296297AY.40.000461
ORF7b5S5LTCACTG1297AY.40.000002
ORF7b5S5LtCatTa283283B.1.6310.952862
ORF7b5S5ATcaGca272272All0.000052
ORF7b5S5ATcaGca196196B.1.1.70.000175
ORF7b5S5StcAtcG158159AY.30.001572
ORF7b5S5StcAtcT1159AY.30.00001
ORF7b5S5delTCA---152152B.1.1.70.000136
ORF7b5S5LtCatTa151151AY.430.000669
ORF7b5S5LtCatTa149151B.10.001365
ORF7b5S5LtCAtTG2151B.10.000018
ORF7b5S5LtCatTa127127B.1.20.001118
ORF7b5S5LtCatTa113113AY.250.00068
ORF7b5S5LtCatTa9696B.1.617.20.000361
ORF7b5S5delTCA---8484AY.40.000131
ORF7b5S5LtCatTa8181P.10.001276
ORF7b5S5StcAtcG7474B.1.160.150.366337
ORF7b5S5LtCatTa7373B.1.466.20.02856
ORF7b5S5LtCatTa6969AY.470.002146
ORF7b5S5StcAtcT5559AY.1020.001458
ORF7b5S5StcAtcG459AY.1020.000106
ORF7b5S5LtCatTa5757AY.1030.000354
ORF7b5S5StcAtcG3057B.1.617.20.000113
ORF7b5S5StcAtcT2657B.1.617.20.000098
ORF7b5S5StcAtcC157B.1.617.20.000004
ORF7b5S5LtCatTa5656B.1.351.20.016944
ORF7b5S5PTcaCca5353All0.00001
ORF7b5S5LtCatTa4949AY.480.022791
ORF7b5S5StcAtcG2947B.1.1.70.000026
ORF7b5S5StcAtcT1647B.1.1.70.000014
ORF7b5S5StcAtcC247B.1.1.70.000002
ORF7b5S5delTCA---4747B.1.20.000414
ORF7b5S5StcAtcG4646B.1.5990.167883
ORF7b5S5LtCatTa4243B.1.10.000762
ORF7b5S5LtCAtTG143B.1.10.000018
ORF7b5S5LtCatTa4242AY.440.000256
ORF7b5S5LtCatTa4040AY.330.002671
ORF7b5S5XtCatGa2639All0.000005
ORF7b5S5XtCatAa1339All0.000002
ORF7b5S5LtCatTa3838AY.50.000785
ORF7b5S5TTcaAca3536All0.000007
ORF7b5S5TTcAAcT136All0
ORF7b5S5StcAtcG2736AY.40.000042
ORF7b5S5StcAtcT636AY.40.000009
ORF7b5S5StcAtcC336AY.40.000005
ORF7b5S5StcAtcT3334AY.980.002607
ORF7b5S5StcAtcC134AY.980.000079
ORF7b5S5LtCatTa3333AY.980.002607
ORF7b5S5delTCA---3232B.1.5620.592593
ORF7b5S5LtCatTa3131AY.46.60.002238
ORF7b5S5LtCatTa2929B.1.1.1860.099656
ORF7b5S5LtCatTa2828AY.4.20.000607
ORF7b5S5delTCA---2828P.10.000441
ORF7b5S5del2TCa--a2125All0.000004
ORF7b5S5del2tCAt--425All0.000001
ORF7b5S5LtCatTa2222AY.140.001936
ORF7b5S5delTCA---2222B.10.000202
ORF7b5S5LtCatTa2222B.1.3690.006275
ORF7b5S5TTcaAca2222B.1.4290.000518
ORF7b5S5LtCatTa2121AY.1020.000557
ORF7b5S5LtCatTa2121AY.720.028571
ORF7b5S5ATcaGca2121B.1.2430.001461
ORF7b5S5LtCatTa2020AY.530.00575
ORF7b5S5LtCatTa1919B.1.4970.00598
ORF7b5S5LtCatTa1818AY.1000.000828
ORF7b5S5StcAtcG1818AY.1100.002028
ORF7b5S5LtCatTa1818AY.30.000179
ORF7b5S5LtCatTa1717AY.290.000268
ORF7b5S5LtCatTa1717AY.46.30.015873
ORF7b5S5LtCatTa1717AY.46.40.002797
ORF7b5S5LtCatTa1717AY.750.000952
ORF7b5S5LtCatTa1717P.1.70.005428
ORF7b5S5XtCatGa1616AY.250.000096
ORF7b5S5LtCatTa1616B.1.1.5190.000635
ORF7b5S5PTcaCca1616B.1.1.70.000014
ORF7b5S5delTCA---1515AY.290.000237
ORF7b5S5LtCatTa1515AY.98.10.000726
ORF7b5S5LtCatTa1515B.1.3110.004119
ORF7b5S5ATcaGca1515B.1.4060.090909
ORF7b5S5delTCA---1515B.1.4270.000757
ORF7b5S5ATcaGca1515B.1.4290.000353
ORF7b5S5LtCatTa1515P.20.0028
ORF7b5S5LtCatTa1414AY.390.000346
ORF7b5S5StcAtcT1414AY.470.000435
ORF7b5S5del2TCa--a1014B.1.1.70.000009
ORF7b5S5del2tCAt--414B.1.1.70.000004
ORF7b5S5LtCatTa1313AY.200.000505
ORF7b5S5LtCatTa1313AY.60.000535
ORF7b5S5delTCA---1313B.1.10.000236
ORF7b5S5LtCatTa1212AY.260.00034
ORF7b5S5LtCatTa1212AY.39.10.000475
ORF7b5S5StcAtcG712AY.430.000031
ORF7b5S5StcAtcT412AY.430.000018
ORF7b5S5StcAtcC112AY.430.000004
ORF7b5S5delTCA---1212AY.470.000373
ORF7b5S5LtCatTa1212B.1.4290.000282
ORF7b5S5LtCatTa1212P.1.20.013873
ORF7b5S5LtCatTa1010AY.1190.000353
ORF7b5S5StcAtcG810AY.390.000198
ORF7b5S5StcAtcT210AY.390.000049
ORF7b5S5StcAtcG1010AY.440.000061
ORF7b5S5StcAtcG610B.10.000055
ORF7b5S5StcAtcT310B.10.000027
ORF7b5S5StcAtcC110B.10.000009
ORF7b5S5delTCA---1010B.1.2340.001319
ORF7b5S5LtCatTa1010B.1.6270.020202
ORF7b5S5del1Tca-ca710P.10.00011
ORF7b5S5del1TCa-Ta210P.10.000032
ORF7b5S5del1tcAtc-110P.10.000016
ORF7b5S5delTCA---99AY.260.000255
ORF7b5S5LtCatTa99AY.540.000858
ORF7b5S5LtCatTa99AY.9.10.000754
ORF7b5S5LtCatTa99B.1.2210.000639
ORF7b5S5del1Tca-ca99Q.80.001484
ORF7b5S5LtCatTa88AY.420.000322
ORF7b5S5delTCA---88AY.430.000035
ORF7b5S5StcAtcG88AY.590.004237
ORF7b5S5LtCatTa88B.1.1.280.00249
ORF7b5S5StcAtcG68B.1.20.000053
ORF7b5S5StcAtcT18B.1.20.000009
ORF7b5S5StcAtcC18B.1.20.000009
ORF7b5S5delTCA---88B.1.617.20.00003
ORF7b5S5LtCatTa88V.10.181818
ORF7b5S5delTCA---77A0.002709
ORF7b5S5ITCaATa47All0.000001
ORF7b5S5ITCAATT37All0.000001
ORF7b5S5delTCA---77AY.1030.000043
ORF7b5S5delTCA---77B.1.1770.000092
ORF7b5S5StcAtcG57B.1.1770.000066
ORF7b5S5StcAtcC27B.1.1770.000026
ORF7b5S5LtCatTa77B.1.6370.000512
ORF7b5S5LtCatTa66A.10.001691
ORF7b5S5StcAtcG56AY.1030.000031
ORF7b5S5StcAtcT16AY.1030.000006
ORF7b5S5LtCatTa66AY.160.002278
ORF7b5S5delTCA---66AY.250.000036
ORF7b5S5LtCatTa66AY.460.000624
ORF7b5S5XtCatGa56B.10.000046
ORF7b5S5XtCatAa16B.10.000009
ORF7b5S5StcAtcG36B.1.10.000054
ORF7b5S5StcAtcT36B.1.10.000054
ORF7b5S5delTCA---66B.1.1.5190.000238
ORF7b5S5LtCatTa66B.1.2580.000399
ORF7b5S5PTcaCca66P.10.000095
ORF7b5S5LtCatTa66P.1.150.001394
ORF7b5S5LtCatTa55AY.230.000349
ORF7b5S5StcAtcG55AY.280.009452
ORF7b5S5LtCatTa55AY.3.10.000426
ORF7b5S5delTCA---55AY.330.000334
ORF7b5S5del1tCat-a35AY.40.000005
ORF7b5S5del1Tca-ca15AY.40.000002
ORF7b5S5del1tcAtc-15AY.40.000002
ORF7b5S5LtCatTa55AY.610.000524
ORF7b5S5LtCatTa55AY.790.006053
ORF7b5S5delTCA---55B.1.1.2140.000277
ORF7b5S5LtCatTa55B.1.1.250.002843
ORF7b5S5delTCA---55B.1.1.3170.002058
ORF7b5S5LtCatTa55B.1.1600.000156
ORF7b5S5delTCA---55B.1.36.290.002587
ORF7b5S5ATcaGca55C.370.00058
ORF7b5S5LtCatTa55P.1.120.00242
ORF7b5S5ATcaGca44AY.1020.000106
ORF7b5S5LtCatTa44AY.1100.000451
ORF7b5S5LtCatTa44AY.1170.000338
ORF7b5S5LtCatTa44AY.1200.000149
ORF7b5S5LtCatTa44AY.1210.000541
ORF7b5S5StcAtcG24AY.250.000012
ORF7b5S5StcAtcC14AY.250.000006
ORF7b5S5StcAtcT14AY.250.000006
ORF7b5S5LtCatTa44AY.740.000463
ORF7b5S5delTCA---44B0.000511
ORF7b5S5StcAtcT44B.1.1.2410.008282
ORF7b5S5StcAtcG44B.1.1600.000125
ORF7b5S5ITCaATa44B.1.1600.000125
ORF7b5S5LtCatTa44B.1.177.60.003906
ORF7b5S5LtCatTa44B.1.177.770.002905
ORF7b5S5delTCA---44B.1.360.000584
ORF7b5S5LtCatTa34B.1.360.000438
ORF7b5S5LtCAtTG14B.1.360.000146
ORF7b5S5LtCatTa44B.1.36.170.001976
ORF7b5S5LtCatTa44B.1.3960.002823
ORF7b5S5LtCatTa44B.1.4270.000202
ORF7b5S5delTCA---44B.1.4290.000094
ORF7b5S5LtCatTa44B.1.438.10.000429
ORF7b5S5LtCatTa44B.1.5610.001588
ORF7b5S5PTcaCca44B.1.617.20.000015
ORF7b5S5del1Tca-ca44B.1.617.20.000015
ORF7b5S5StcAtcG44C.80.017857
ORF7b5S5delTCA---44P.1.140.000191
ORF7b5S5LtCatTa33AY.1050.001929
ORF7b5S5delTCA---33AY.1180.000188
ORF7b5S5LtCatTa33AY.120.000948
ORF7b5S5XtCatAa33AY.430.000013
ORF7b5S5PTcaCca33AY.430.000013
ORF7b5S5delTCA---33AY.440.000018
ORF7b5S5StcAtcG33AY.46.60.000217
ORF7b5S5StcAtcT33AY.480.001395
ORF7b5S5LtCatTa33AY.590.001589
ORF7b5S5LtCatTa33AY.9.20.00011
ORF7b5S5StcAtcG33AY.910.002191
ORF7b5S5TTcaAca33B.10.000027
ORF7b5S5delTCA---33B.1.1.2320.005445
ORF7b5S5delTCA---33B.1.1.2430.012245
ORF7b5S5del1Tca-ca33B.1.1.2840.000322
ORF7b5S5delTCA---33B.1.1.3440.032258
ORF7b5S5delTCA---33B.1.1.370.000579
ORF7b5S5StcAtcT23B.1.1.5190.000079
ORF7b5S5StcAtcG13B.1.1.5190.00004
ORF7b5S5del2TCa--a33B.1.20.000026
ORF7b5S5LtCatTa33B.1.2100.006397
ORF7b5S5LtCatTa33B.1.2320.001612
ORF7b5S5LtCatTa33B.1.2340.000396
ORF7b5S5delTCA---33B.1.3510.000089
ORF7b5S5LtCatTa23B.1.3510.000059
ORF7b5S5LtCAtTG13B.1.3510.00003
ORF7b5S5LtCAtTG33B.1.36.10.003421
ORF7b5S5LtCatTa33B.1.5260.000071
ORF7b5S5delTCA---33B.1.5950.000783
ORF7b5S5delTCA---33B.1.5960.000261
ORF7b5S5ATcaGca33B.1.617.20.000011
ORF7b5S5del1Tca-ca33B.1.6260.017143
ORF7b5S5LtCatTa33C.370.000348
ORF7b5S5ATcaGca33P.10.000047
ORF7b5S5LtCatTa33P.1.140.000143
ORF7b5S5delTCA---33P.1.150.000697
ORF7b5S5TTcaAca33P.1.70.000958
ORF7b5S5XtCatGa220.111111
ORF7b5S5delTCA---22AY.1080.002205
ORF7b5S5LtCatTa22AY.1090.001479
ORF7b5S5LtCatTa22AY.1130.000285
ORF7b5S5delTCA---22AY.1130.000285
ORF7b5S5LtCatTa22AY.1160.000574
ORF7b5S5StcAtcG22AY.1170.000169
ORF7b5S5delTCA---22AY.1200.000074
ORF7b5S5StcAtcT12AY.1200.000037
ORF7b5S5StcAtcG12AY.1200.000037
ORF7b5S5delTCA---22AY.200.000078
ORF7b5S5StcAtcC12AY.200.000039
ORF7b5S5StcAtcG12AY.200.000039
ORF7b5S5StcAtcG22AY.230.000139
ORF7b5S5del2TCa--a22AY.250.000012
ORF7b5S5StcAtcG12AY.3.10.000085
ORF7b5S5StcAtcC12AY.3.10.000085
ORF7b5S5delTCA---22AY.300.000791
ORF7b5S5ATcaGca22AY.330.000134
ORF7b5S5LtCatTa22AY.340.000194
ORF7b5S5LtCatTa22AY.350.000466
ORF7b5S5delTCA---22AY.390.000049
ORF7b5S5PTcaCca22AY.39.10.000079
ORF7b5S5PTcaCca22AY.40.000003
ORF7b5S5XtCatGa12AY.40.000002
ORF7b5S5XtCatAa12AY.40.000002
ORF7b5S5delTCA---22AY.4.20.000043
ORF7b5S5LtCatTa22AY.4.40.000818
ORF7b5S5PTcaCca22AY.46.40.000329
ORF7b5S5del1TCa-Ta22AY.470.000062
ORF7b5S5StcAtcG22AY.640.00119
ORF7b5S5delTCA---22AY.650.001066
ORF7b5S5StcAtcT22AY.650.001066
ORF7b5S5LtCatTa22AY.690.000373
ORF7b5S5LtCatTa22AY.75.10.000361
ORF7b5S5LtCatTa22AY.90.000135
ORF7b5S5LtCatTa22AY.990.002099
ORF7b5S5LtCatTa22AY.99.20.000184
ORF7b5S5ATcaGca22B.10.000018
ORF7b5S5PTcaCca22B.10.000018
ORF7b5S5delTCA---22B.1.1.2220.000408
ORF7b5S5delTCA---22B.1.1.2840.000215
ORF7b5S5LtCatTa22B.1.1.3540.008772
ORF7b5S5XtCatAa22B.1.1.70.000002
ORF7b5S5delTCA---22B.1.1.750.021277
ORF7b5S5LtCatTa22B.1.177.600.000437
ORF7b5S5delTCA---22B.1.177.600.000437
ORF7b5S5LtCatTa22B.1.177.810.000379
ORF7b5S5LtCatTa22B.1.2430.000139
ORF7b5S5delTCA---22B.1.2430.000139
ORF7b5S5LtCatTa22B.1.36.290.001035
ORF7b5S5TTcaAca22B.1.4270.000101
ORF7b5S5LtCatTa22B.1.4740.003802
ORF7b5S5LtCatTa22B.1.4990.002101
ORF7b5S5LtCatTa22B.1.5750.000607
ORF7b5S5LtCatTa22B.1.5960.000174
ORF7b5S5LtCatTa22B.1.617.30.00597
ORF7b5S5delTCA---22C.370.000232
ORF7b5S5StcAtcC22C.370.000232
ORF7b5S5StcAtcG22D.20.00015
ORF7b5S5StcAtcG12P.10.000016
ORF7b5S5StcAtcC12P.10.000016
ORF7b5S5delTCA---22P.1.10.000635
ORF7b5S5delTCA---22P.1.40.001953
ORF7b5S5del1Tca-ca22Q.10.000253
ORF7b5S5LtCatTa22Q.20.001227
ORF7b5S5StcAtcC110.055556
ORF7b5S5LtCatTa110.055556
ORF7b5S5delTCA---11A.10.000282
ORF7b5S5delTCA---11A.20.000662
ORF7b5S5delTCA---11A.2.20.001689
ORF7b5S5StcAtcG11A.2.40.003367
ORF7b5S5LtCatTa11A.2.50.000499
ORF7b5S5LtCatTa11A.2.5.20.001572
ORF7b5S5delTCA---11A.230.010526
ORF7b5S5DTCAGAC11All0
ORF7b5S5RTCaAGa11All0
ORF7b5S5FtCAtTC11All0
ORF7b5S5LtCatTa11AW.10.003049
ORF7b5S5LtCatTa11AY.100.00053
ORF7b5S5delTCA---11AY.1000.000046
ORF7b5S5PTcaCca11AY.1010.00049
ORF7b5S5ATcaGca11AY.1030.000006
ORF7b5S5StcAtcT11AY.1060.000335
ORF7b5S5LtCatTa11AY.1110.000183
ORF7b5S5StcAtcG11AY.1110.000183
ORF7b5S5LtCatTa11AY.1140.000231
ORF7b5S5LtCatTa11AY.1150.005208
ORF7b5S5del1Tca-ca11AY.1190.000035
ORF7b5S5delTCA---11AY.120.000316
ORF7b5S5LtCatTa11AY.120.2.10.000498
ORF7b5S5LtCatTa11AY.130.000161
ORF7b5S5LtCatTa11AY.190.00114
ORF7b5S5StcAtcG11AY.20.000356
ORF7b5S5delTCA---11AY.20.000356
ORF7b5S5delTCA---11AY.240.000431
ORF7b5S5del1Tca-ca11AY.260.000028
ORF7b5S5del2TCa--a11AY.260.000028
ORF7b5S5LtCatTa11AY.270.000065
ORF7b5S5PTcaCca11AY.290.000016
ORF7b5S5StcAtcG11AY.300.000396
ORF7b5S5PTcaCca11AY.320.000532
ORF7b5S5StcAtcT11AY.330.000067
ORF7b5S5StcAtcG11AY.340.000097
ORF7b5S5LtCatTa11AY.360.000148
ORF7b5S5StcAtcG11AY.360.000148
ORF7b5S5delTCA---11AY.370.000316
ORF7b5S5LtCatTa11AY.370.000316
ORF7b5S5PTcaCca11AY.390.000025
ORF7b5S5TTcaAca11AY.390.000025
ORF7b5S5ATcaGca11AY.40.000002
ORF7b5S5StcAtcG11AY.4.20.000022
ORF7b5S5delTCA---11AY.4.2.10.000149
ORF7b5S5LtCatTa11AY.4.2.10.000149
ORF7b5S5StcAtcG11AY.4.2.10.000149
ORF7b5S5LtCatTa11AY.4.50.000107
ORF7b5S5del2TCa--a11AY.440.000006
ORF7b5S5LtCatTa11AY.450.000122
ORF7b5S5ATcaGca11AY.460.000104
ORF7b5S5StcAtcT11AY.460.000104
ORF7b5S5LtCatTa11AY.46.10.001027
ORF7b5S5LtCatTa11AY.46.20.000635
ORF7b5S5TTcaAca11AY.50.000021
ORF7b5S5StcAtcG11AY.50.000021
ORF7b5S5LtCatTa11AY.520.000814
ORF7b5S5delTCA---11AY.530.000288
ORF7b5S5LtCatTa11AY.550.000917
ORF7b5S5StcAtcG11AY.550.000917
ORF7b5S5LtCatTa11AY.560.001605
ORF7b5S5LtCatTa11AY.580.000907
ORF7b5S5delTCA---11AY.600.000938
ORF7b5S5ATcaGca11AY.610.000105
ORF7b5S5LtCatTa11AY.620.000436
ORF7b5S5del1TCA-NN11AY.650.000533
ORF7b5S5StcAtcG11AY.70.000196
ORF7b5S5delTCA---11AY.700.000209
ORF7b5S5StcAtcT11AY.710.000475
ORF7b5S5PTcaCca11AY.710.000475
ORF7b5S5LtCatTa11AY.710.000475
ORF7b5S5StcAtcT11AY.750.000056
ORF7b5S5delTCA---11AY.75.10.00018
ORF7b5S5delTCA---11AY.790.001211
ORF7b5S5LtCatTa11AY.80.000606
ORF7b5S5XtCatAa11AY.820.001357
ORF7b5S5StcAtcG11AY.880.000884
ORF7b5S5delTCA---11AY.9.20.000037
ORF7b5S5del1tcAtc-11AY.9.20.000037
ORF7b5S5LtCatTa11AY.920.000287
ORF7b5S5LtCatTa11AY.950.000761
ORF7b5S5delTCA---11AY.98.10.000048
ORF7b5S5LtCatTa11AZ.10.000867
ORF7b5S5delTCA---11AZ.20.000821
ORF7b5S5delTCA---11AZ.30.00152
ORF7b5S5LtCatTa11B0.000128
ORF7b5S5del2TCa--a11B.10.000009
ORF7b5S5FtCAtTC11B.10.000009
ORF7b5S5PTcaCca11B.1.10.000018
ORF7b5S5TTcAAcT11B.1.10.000018
ORF7b5S5ITCAATT11B.1.10.000018
ORF7b5S5del1Tca-ca11B.1.10.000018
ORF7b5S5LtCatTa11B.1.1.10.000327
ORF7b5S5LtCatTa11B.1.1.1010.01
ORF7b5S5LtCatTa11B.1.1.1740.003378
ORF7b5S5del1tcAtc-11B.1.1.1860.003436
ORF7b5S5LtCAtTG11B.1.1.1890.001513
ORF7b5S5LtCatTa11B.1.1.2050.003717
ORF7b5S5LtCatTa11B.1.1.2070.001182
ORF7b5S5delTCA---11B.1.1.2160.00089
ORF7b5S5delTCA---11B.1.1.2310.003096
ORF7b5S5PTcaCca11B.1.1.250.000569
ORF7b5S5delTCA---11B.1.1.2540.011236
ORF7b5S5delTCA---11B.1.1.2650.003155
ORF7b5S5StcAtcG11B.1.1.280.000311
ORF7b5S5delTCA---11B.1.1.280.000311
ORF7b5S5LtCAtTG11B.1.1.2820.011628
ORF7b5S5StcAtcT11B.1.1.2910.000742
ORF7b5S5LtCatTa11B.1.1.2980.000862
ORF7b5S5ITCAATT11B.1.1.3050.003861
ORF7b5S5LtCatTa11B.1.1.3060.000438
ORF7b5S5StcAtcG11B.1.1.3490.010309
ORF7b5S5LtCatTa11B.1.1.3730.02381
ORF7b5S5LtCatTa11B.1.1.390.00051
ORF7b5S5StcAtcG11B.1.1.3980.003226
ORF7b5S5StcAtcT11B.1.1.4090.002833
ORF7b5S5ATcaGca11B.1.1.410.006329
ORF7b5S5LtCatTa11B.1.1.4110.014706
ORF7b5S5delTCA---11B.1.1.4160.000905
ORF7b5S5LtCatTa11B.1.1.4240.045455
ORF7b5S5del1Tca-ca11B.1.1.4340.000349
ORF7b5S5LtCatTa11B.1.1.4640.001473
ORF7b5S5del1Tca-ca11B.1.1.500.000679
ORF7b5S5delTCA---11B.1.1.500.000679
ORF7b5S5LtCatTa11B.1.1.5070.008696
ORF7b5S5del1Tca-ca11B.1.1.5190.00004
ORF7b5S5XtCatAa11B.1.1.5190.00004
ORF7b5S5PTcaCca11B.1.1.5190.00004
ORF7b5S5delTCA---11B.1.1.5250.005464
ORF7b5S5delTCA---11B.1.1.5260.003546
ORF7b5S5RTCaAGa11B.1.1.70.000001
ORF7b5S5LtCatTa11B.1.1.710.006061
ORF7b5S5PTcaCca11B.1.1.890.006061
ORF7b5S5LtCatTa11B.1.1040.00369
ORF7b5S5delTCA---11B.1.110.30.000718
ORF7b5S5XtCatAa11B.1.1600.000031
ORF7b5S5delTCA---11B.1.1600.000031
ORF7b5S5LtCatTa11B.1.160.110.005714
ORF7b5S5LtCatTa11B.1.160.300.002976
ORF7b5S5LtCatTa11B.1.177.120.000152
ORF7b5S5delTCA---11B.1.177.120.000152
ORF7b5S5LtCatTa11B.1.177.150.000631
ORF7b5S5LtCatTa11B.1.177.170.000821
ORF7b5S5LtCatTa11B.1.177.210.000076
ORF7b5S5LtCatTa11B.1.177.300.002513
ORF7b5S5LtCatTa11B.1.177.310.011494
ORF7b5S5LtCatTa11B.1.177.40.000211
ORF7b5S5StcAtcG11B.1.177.40.000211
ORF7b5S5del1Tca-ca11B.1.177.420.000894
ORF7b5S5PTcaCca11B.1.177.440.000519
ORF7b5S5delTCA---11B.1.177.500.004695
ORF7b5S5LtCatTa11B.1.177.540.000606
ORF7b5S5delTCA---11B.1.177.570.000281
ORF7b5S5LtCatTa11B.1.177.630.002703
ORF7b5S5LtCatTa11B.1.177.650.000665
ORF7b5S5LtCatTa11B.1.177.70.000165
ORF7b5S5StcAtcG11B.1.177.70.000165
ORF7b5S5LtCatTa11B.1.177.730.000566
ORF7b5S5StcAtcG11B.1.177.740.015152
ORF7b5S5StcAtcG11B.1.177.820.000477
ORF7b5S5LtCatTa11B.1.177.860.000183
ORF7b5S5del1Tca-ca11B.1.177.870.000728
ORF7b5S5PTcaCca11B.1.20.000009
ORF7b5S5del1Tca-ca11B.1.20.000009
ORF7b5S5TTcaAca11B.1.20.000009
ORF7b5S5XtCatAa11B.1.20.000009
ORF7b5S5delTCA---11B.1.2190.009434
ORF7b5S5StcAtcG11B.1.2210.000071
ORF7b5S5PTcaCca11B.1.2340.000132
ORF7b5S5LtCatTa11B.1.2400.000216
ORF7b5S5StcAtcG11B.1.2400.000216
ORF7b5S5LtCAtTG11B.1.2420.018868
ORF7b5S5LtCatTa11B.1.2470.014925
ORF7b5S5delTCA---11B.1.2580.000067
ORF7b5S5del1Tca-ca11B.1.258.110.000396
ORF7b5S5StcAtcG11B.1.258.170.000104
ORF7b5S5delTCA---11B.1.2650.001271
ORF7b5S5LtCatTa11B.1.3060.005714
ORF7b5S5LtCatTa11B.1.3240.001605
ORF7b5S5del2TCa--a11B.1.3510.00003
ORF7b5S5DTCAGAC11B.1.3510.00003
ORF7b5S5delTCA---11B.1.351.20.000303
ORF7b5S5delTCA---11B.1.351.30.000876
ORF7b5S5StcAtcG11B.1.360.000146
ORF7b5S5LtCatTa11B.1.3670.000792
ORF7b5S5StcAtcG11B.1.3670.000792
ORF7b5S5ATcaGca11B.1.3750.00082
ORF7b5S5LtCatTa11B.1.3990.001934
ORF7b5S5LtCatTa11B.1.4090.000781
ORF7b5S5XtCatGa11B.1.4270.00005
ORF7b5S5LtCatTa11B.1.4280.00102
ORF7b5S5XtCatAa11B.1.4290.000024
ORF7b5S5LtCAtTG11B.1.4380.006536
ORF7b5S5delTCA---11B.1.438.10.000107
ORF7b5S5StcAtcC11B.1.4460.02
ORF7b5S5LtCatTa11B.1.4620.007246
ORF7b5S5delTCA---11B.1.4680.005714
ORF7b5S5LtCatTa11B.1.5240.001406
ORF7b5S5StcAtcC11B.1.5250.000113
ORF7b5S5LtCatTa11B.1.5250.000113
ORF7b5S5PTcaCca11B.1.5260.000024
ORF7b5S5TTcaAca11B.1.5260.000024
ORF7b5S5delTCA---11B.1.5260.000024
ORF7b5S5del1tcAtc-11B.1.5260.000024
ORF7b5S5LtCatTa11B.1.5300.007143
ORF7b5S5PTcaCca11B.1.5300.007143
ORF7b5S5LtCatTa11B.1.5370.02
ORF7b5S5LtCatTa11B.1.5820.000491
ORF7b5S5LtCatTa11B.1.5900.004545
ORF7b5S5LtCatTa11B.1.5950.000261
ORF7b5S5StcAtcG11B.1.5960.000087
ORF7b5S5XtCatAa11B.1.5990.00365
ORF7b5S5delTCA---11B.1.6040.017241
ORF7b5S5LtCatTa11B.1.6120.002653
ORF7b5S5LtCatTa11B.1.617.10.000129
ORF7b5S5TTcaAca11B.1.617.10.000129
ORF7b5S5delTCA---11B.1.617.10.000129
ORF7b5S5StcAtcG11B.1.617.10.000129
ORF7b5S5ITCAATT11B.1.617.20.000004
ORF7b5S5del2TCa--a11B.1.617.20.000004
ORF7b5S5LtCatTa11B.1.6210.000089
ORF7b5S5del2TCa--a11B.1.6210.000089
ORF7b5S5delTCA---11B.1.621.10.000506
ORF7b5S5delTCA---11B.1.6300.005236
ORF7b5S5LtCatTa11B.1.910.002075
ORF7b5S5delTCA---11B.60.00091
ORF7b5S5StcAtcT11B.60.00091
ORF7b5S5LtCatTa11B.60.00091
ORF7b5S5LtCatTa11B.6.60.000889
ORF7b5S5LtCatTa11B.600.015873
ORF7b5S5LtCatTa11C.1.20.004255
ORF7b5S5PTcaCca11C.350.000774
ORF7b5S5LtCatTa11C.36.30.000567
ORF7b5S5LtCatTa11C.390.018868
ORF7b5S5LtCatTa11D.20.000075
ORF7b5S5LtCatTa11L.30.003546
ORF7b5S5delTCA---11N.50.001767
ORF7b5S5LtCatTa11N.50.001767
ORF7b5S5XtCatGa11P.10.000016
ORF7b5S5delTCA---11P.1.120.000484
ORF7b5S5PTcaCca11P.1.140.000048
ORF7b5S5del1Tca-ca11P.1.150.000232
ORF7b5S5delTCA---11P.1.160.000374
ORF7b5S5delTCA---11P.1.70.000319
ORF7b5S5StcAtcG11P.20.000187
ORF7b5S5delTCA---11Q.10.000126
ORF7b5S5LtCatTa11Q.30.000145
ORF7b5S5LtCatTa11Q.80.000165
ORF7b5S5delTCA---11Q.80.000165
ORF7b5S5delTCA---11R.10.00009
ORF7b5S5LtCatTa11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.